MELO3C029057.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C029057.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionImportin subunit alpha
Locationchr01 : 18403449 .. 18404931 (+)
Sequence length628
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCATAATCTAATAGGTGAGTTGAGTGGTGGAGGATCTGCTATGCTTGCAGCGAGGGGGAAAGGTCTCTTGTCTTGGATTGAAGATGACAGTTTAATTGTGGATGAAACAGCCACTGCAATTCCTGAGGTAATCAGTTGGTTATTAGTATTTCTTTGTGTTGAGAATAATATAAAGTAGTACTTTTTGATTAGTGAAAACCATTTTTGATATGTTTTGTAGATAGTTTCATTTTTTTTGTGCTATTATAACTATTTCTCTACTTTTTTTGTACTGACTTTGTATTCTTTCATTTGTTCTGAAAGTAGTTATTTCTATTAAAAAATGCTGGGAACCTAAGCATAAAATCTTAAATATGAATCATACTGTGTTCAAGAAAAAATAATTAGAATGTTTATTTATTTTTTATTTTTTTGGATAACACCACTATTACTTGATTTGCTTAATAACATCATTTCCTATTCTTGCACAGGCTGTGTGGGCCTTAGGTAATGTTGCTGGTGACTCTCCAAGTTGTAGGGATCTTGTTCATAGCCATTGTGCACTAGTGTCGTTACTTGGTCAACTAAATGAGCACTCAAAATTATCCATGCTGAGAAATGCAACATGGACTTTATCTAATTTCTGTCGTGGGAAGCTCCCAACTCCTTTTGATCAGGTTTATTTCAGTTAACCTTTCGAATTCAAGATCCAACTTTGAGTTTCTTCTAATATTTAGAACTGTTTTGGTGGTCACTTTATGTTTGGTTCTTTTGTTTGGCAATGAAAAGACTATTATGGTGGTGACTATTTATCAAAACTTGACTTGGTTTTTGAAAAACATGAATAGAAAGTTGATAACAAAGCAAGAAATGTAGATGTGGTCACTTATTAGATGCTTGGATTTTTTTTATGCACTTATATTTTTCAAGTAACTAAAGGAGAATTTGTTCATGGGAAGTTAACAAAATCTTGCCTTTGTTTGGAACTATCATATCATCCTCATCTTTCGTAACTAACTGTGATTATGATATTGTTGGATTAAAGAATTACTTGAATGCTCAGTATTTTGGTGAGATTGGTATTGGTACTCCCCCTCAAAAGTTTAGTAATCAAATGTGAATATTTCTACTAGCAACTAGGTCATAACATTATTATTTATCAATTCAACCATCTTGATGTATTTTACAGGGAGCTATCACTAAACAAATGACTGCAATAGAAGAAATAGTTGCAAGTGAGTACAATTAGCCAGACCCTCATCTTTGTGACAAGATCTTGAAGATGGTCATTTGTGAAGCGTTCTAGTTTGTTATTAGTGCAGTTTTAGTTATTGCTTTCTCAATATATTCTTTTTCTTTCTTTCTTTCTTTTTTTCCAAAGGATGATCAGTGTAATAATTAAGCTTCATAATTTCTTTGTGTTTGGAACCAAGTTGTATATAAATGTACAAATTATTAAGATTTCATTTTGTATATGTACAAGTAAACTATTTCATTTTTAA

mRNA sequence

AAGCATAATCTAATAGGTGAGTTGAGTGGTGGAGGATCTGCTATGCTTGCAGCGAGGGGGAAAGGTCTCTTGTCTTGGATTGAAGATGACAGTTTAATTGTGGATGAAACAGCCACTGCAATTCCTGAGGCTGTGTGGGCCTTAGGTAATGTTGCTGGTGACTCTCCAAGTTGTAGGGATCTTGTTCATAGCCATTGTGCACTAGTGTCGTTACTTGGTCAACTAAATGAGCACTCAAAATTATCCATGCTGAGAAATGCAACATGGACTTTATCTAATTTCTGTCGTGGGAAGCTCCCAACTCCTTTTGATCAGGGAGCTATCACTAAACAAATGACTGCAATAGAAGAAATAGTTGCAAGTGAGTACAATTAGCCAGACCCTCATCTTTGTGACAAGATCTTGAAGATGGTCATTTGTGAAGCGTTCTAGTTTGTTATTAGTGCAGTTTTAGTTATTGCTTTCTCAATATATTCTTTTTCTTTCTTTCTTTCTTTTTTTCCAAAGGATGATCAGTGTAATAATTAAGCTTCATAATTTCTTTGTGTTTGGAACCAAGTTGTATATAAATGTACAAATTATTAAGATTTCATTTTGTATATGTACAAGTAAACTATTTCATTTTTAA

Coding sequence (CDS)

ATGCTTGCAGCGAGGGGGAAAGGTCTCTTGTCTTGGATTGAAGATGACAGTTTAATTGTGGATGAAACAGCCACTGCAATTCCTGAGGCTGTGTGGGCCTTAGGTAATGTTGCTGGTGACTCTCCAAGTTGTAGGGATCTTGTTCATAGCCATTGTGCACTAGTGTCGTTACTTGGTCAACTAAATGAGCACTCAAAATTATCCATGCTGAGAAATGCAACATGGACTTTATCTAATTTCTGTCGTGGGAAGCTCCCAACTCCTTTTGATCAGGGAGCTATCACTAAACAAATGACTGCAATAGAAGAAATAGTTGCAAGTGAGTACAATTAG

Protein sequence

MLAARGKGLLSWIEDDSLIVDETATAIPEAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTPFDQGAITKQMTAIEEIVASEYN
Homology
[Close]
BLAST of MELO3C029057.2.1 vs. NCBI nr
Match: KHG26190.1 (Importin subunit alpha-1 -like protein [Gossypium arboreum])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 179 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 238

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 239 FEQ--VTPALPALERLVHS 255

[Close]
BLAST of MELO3C029057.2.1 vs. NCBI nr
Match: KJB12652.1 (hypothetical protein B456_002G029800, partial [Gossypium raimondii])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 233 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 292

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 293 FEQ--VTPALPALERLVHS 309

[Close]
BLAST of MELO3C029057.2.1 vs. NCBI nr
Match: XP_012453286.1 (PREDICTED: importin subunit alpha-2-like isoform X2 [Gossypium raimondii] >XP_017642736.1 PREDICTED: importin subunit alpha-2-like isoform X2 [Gossypium arboreum] >KJB12653.1 hypothetical protein B456_002G029800 [Gossypium raimondii] >KJB12654.1 hypothetical protein B456_002G029800 [Gossypium raimondii])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

[Close]
BLAST of MELO3C029057.2.1 vs. NCBI nr
Match: XP_012453283.1 (PREDICTED: importin subunit alpha-2-like isoform X1 [Gossypium raimondii] >XP_017642734.1 PREDICTED: importin subunit alpha-2-like isoform X1 [Gossypium arboreum] >XP_017642735.1 PREDICTED: importin subunit alpha-2-like isoform X1 [Gossypium arboreum] >KJB12655.1 hypothetical protein B456_002G029800 [Gossypium raimondii])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

[Close]
BLAST of MELO3C029057.2.1 vs. NCBI nr
Match: XP_016724293.1 (PREDICTED: importin subunit alpha-2-like isoform X1 [Gossypium hirsutum])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

[Close]
BLAST of MELO3C029057.2.1 vs. TAIR10
Match: AT4G16143.1 (importin alpha isoform 2)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 0 

Query: 18  LIVDETATAIPEAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTL 77
           L+  ++     +AVWALGNVAGDSP CRDLV    AL+ LL QLNEH+KLSMLRNATWTL
Sbjct: 171 LLASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTL 230

Query: 78  SNFCRGKLPTPFDQGAITKQMTAIEEIVAS 108
           SNFCRGK   PFDQ  +   + A+E ++ S
Sbjct: 231 SNFCRGKPQPPFDQ--VRPALPALERLIHS 258

[Close]
BLAST of MELO3C029057.2.1 vs. TAIR10
Match: AT3G06720.1 (importin alpha isoform 1)

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-23
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGNVAGDSP CRDLV    AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK    
Sbjct: 177 QAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPH 236

Query: 89  FDQGAITKQMTAIEEIVASE 109
           FDQ  +   + A+E ++ S+
Sbjct: 237 FDQ--VKPALPALERLIHSD 254

[Close]
BLAST of MELO3C029057.2.1 vs. TAIR10
Match: AT1G02690.2 (importin alpha isoform 6)

HSP 1 Score: 97.8 bits (242), Expect = 4.3e-21
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGNVAGDSP CRD V S  A++SLL Q +EHSKLSMLRNATWTLSNFCRGK P P
Sbjct: 181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGK-PQP 240

Query: 89  FDQGAITKQMTAIEEIVAS 108
             +      + A+E ++ S
Sbjct: 241 AFEQQTKAALPALERLLHS 258

[Close]
BLAST of MELO3C029057.2.1 vs. TAIR10
Match: AT5G49310.1 (importin alpha isoform 5)

HSP 1 Score: 84.7 bits (208), Expect = 3.8e-17
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +A+W LGNVAGDS  CRD V +  A + LL QLN H+ LS+LRNATWTLSNF RGK   P
Sbjct: 175 QAIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPP 234

Query: 89  FD 91
           FD
Sbjct: 235 FD 236

[Close]
BLAST of MELO3C029057.2.1 vs. TAIR10
Match: AT1G09270.1 (importin alpha isoform 4)

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 57  LLGQLNEHSKLSMLRNATWTLSNFCRGKLPTPFDQ 92
           LL QLNE+SKLSMLRNATWTLSNFCRGK PTPF+Q
Sbjct: 212 LLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQ 246

[Close]
BLAST of MELO3C029057.2.1 vs. Swiss-Prot
Match: sp|F4JL11|IMPA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=IMPA2 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-23
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 0 

Query: 18  LIVDETATAIPEAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTL 77
           L+  ++     +AVWALGNVAGDSP CRDLV    AL+ LL QLNEH+KLSMLRNATWTL
Sbjct: 171 LLASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTL 230

Query: 78  SNFCRGKLPTPFDQGAITKQMTAIEEIVAS 108
           SNFCRGK   PFDQ  +   + A+E ++ S
Sbjct: 231 SNFCRGKPQPPFDQ--VRPALPALERLIHS 258

[Close]
BLAST of MELO3C029057.2.1 vs. Swiss-Prot
Match: sp|Q96321|IMPA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=IMPA1 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGNVAGDSP CRDLV    AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK    
Sbjct: 177 QAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPH 236

Query: 89  FDQGAITKQMTAIEEIVASE 109
           FDQ  +   + A+E ++ S+
Sbjct: 237 FDQ--VKPALPALERLIHSD 254

[Close]
BLAST of MELO3C029057.2.1 vs. Swiss-Prot
Match: sp|Q9SLX0|IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0155601 PE=1 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-20
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGNVAGDSP CRDLV +   L  LL QLNEH+KLSMLRNATWTLSNFCRGK    
Sbjct: 183 QAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPN 242

Query: 89  FDQGAITKQMTAIEEIVASE 109
           F+Q  +   ++A++ ++ S+
Sbjct: 243 FEQ--VKPALSALQRLIHSQ 260

[Close]
BLAST of MELO3C029057.2.1 vs. Swiss-Prot
Match: sp|Q9FWY7|IMPA6_ARATH (Importin subunit alpha-6 OS=Arabidopsis thaliana OX=3702 GN=IMPA6 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGNVAGDSP CRD V S  A++SLL Q +EHSKLSMLRNATWTLSNFCRGK    
Sbjct: 181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query: 89  FDQ 92
           F+Q
Sbjct: 241 FEQ 243

[Close]
BLAST of MELO3C029057.2.1 vs. Swiss-Prot
Match: sp|Q9FJ09|IMPA5_ARATH (Importin subunit alpha-5 OS=Arabidopsis thaliana OX=3702 GN=IMPA5 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-16
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +A+W LGNVAGDS  CRD V +  A + LL QLN H+ LS+LRNATWTLSNF RGK   P
Sbjct: 175 QAIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPP 234

Query: 89  FD 91
           FD
Sbjct: 235 FD 236

[Close]
BLAST of MELO3C029057.2.1 vs. TrEMBL
Match: tr|A0A0D2NHI1|A0A0D2NHI1_GOSRA (Importin subunit alpha OS=Gossypium raimondii OX=29730 GN=B456_002G029800 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

[Close]
BLAST of MELO3C029057.2.1 vs. TrEMBL
Match: tr|A0A0B0PMH7|A0A0B0PMH7_GOSAR (Importin subunit alpha OS=Gossypium arboreum OX=29729 GN=F383_09269 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 179 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 238

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 239 FEQ--VTPALPALERLVHS 255

[Close]
BLAST of MELO3C029057.2.1 vs. TrEMBL
Match: tr|A0A1U8MFE7|A0A1U8MFE7_GOSHI (Importin subunit alpha OS=Gossypium hirsutum OX=3635 GN=LOC107936134 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

[Close]
BLAST of MELO3C029057.2.1 vs. TrEMBL
Match: tr|A0A1U8MFF8|A0A1U8MFF8_GOSHI (Importin subunit alpha OS=Gossypium hirsutum OX=3635 GN=LOC107936134 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

[Close]
BLAST of MELO3C029057.2.1 vs. TrEMBL
Match: tr|A0A0D2QZS7|A0A0D2QZS7_GOSRA (Importin subunit alpha OS=Gossypium raimondii OX=29730 GN=B456_002G029800 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.6e-22
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0 

Query: 29  EAVWALGNVAGDSPSCRDLVHSHCALVSLLGQLNEHSKLSMLRNATWTLSNFCRGKLPTP 88
           +AVWALGN+AGDSP CRDLV SH AL+ LL QLNEH+KLSMLRNATWTLSNFCRGK   P
Sbjct: 177 QAVWALGNIAGDSPRCRDLVLSHGALMPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPP 236

Query: 89  FDQGAITKQMTAIEEIVAS 108
           F+Q  +T  + A+E +V S
Sbjct: 237 FEQ--VTPALPALERLVHS 253

The following BLAST results are available for this feature:
BLAST of MELO3C029057.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KHG26190.15.5e-2269.62Importin subunit alpha-1 -like protein [Gossypium arboreum][more]
KJB12652.15.5e-2269.62hypothetical protein B456_002G029800, partial [Gossypium raimondii][more]
XP_012453286.15.5e-2269.62PREDICTED: importin subunit alpha-2-like isoform X2 [Gossypium raimondii] >XP_01... [more]
XP_012453283.15.5e-2269.62PREDICTED: importin subunit alpha-2-like isoform X1 [Gossypium raimondii] >XP_01... [more]
XP_016724293.15.5e-2269.62PREDICTED: importin subunit alpha-2-like isoform X1 [Gossypium hirsutum][more]
BLAST of MELO3C029057.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16143.11.4e-2460.00importin alpha isoform 2[more]
AT3G06720.16.1e-2365.00importin alpha isoform 1[more]
AT1G02690.24.3e-2163.29importin alpha isoform 6[more]
AT5G49310.13.8e-1764.52importin alpha isoform 5[more]
AT1G09270.13.7e-1288.57importin alpha isoform 4[more]
BLAST of MELO3C029057.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4JL11|IMPA2_ARATH2.6e-2360.00Importin subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=IMPA2 PE=1 SV=1[more]
sp|Q96321|IMPA1_ARATH1.1e-2165.00Importin subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=IMPA1 PE=1 SV=2[more]
sp|Q9SLX0|IMA1B_ORYSJ1.2e-2061.25Importin subunit alpha-1b OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g01556... [more]
sp|Q9FWY7|IMPA6_ARATH1.3e-1974.60Importin subunit alpha-6 OS=Arabidopsis thaliana OX=3702 GN=IMPA6 PE=2 SV=1[more]
sp|Q9FJ09|IMPA5_ARATH6.9e-1664.52Importin subunit alpha-5 OS=Arabidopsis thaliana OX=3702 GN=IMPA5 PE=2 SV=1[more]
BLAST of MELO3C029057.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0D2NHI1|A0A0D2NHI1_GOSRA3.6e-2269.62Importin subunit alpha OS=Gossypium raimondii OX=29730 GN=B456_002G029800 PE=3 S... [more]
tr|A0A0B0PMH7|A0A0B0PMH7_GOSAR3.6e-2269.62Importin subunit alpha OS=Gossypium arboreum OX=29729 GN=F383_09269 PE=3 SV=1[more]
tr|A0A1U8MFE7|A0A1U8MFE7_GOSHI3.6e-2269.62Importin subunit alpha OS=Gossypium hirsutum OX=3635 GN=LOC107936134 PE=3 SV=1[more]
tr|A0A1U8MFF8|A0A1U8MFF8_GOSHI3.6e-2269.62Importin subunit alpha OS=Gossypium hirsutum OX=3635 GN=LOC107936134 PE=3 SV=1[more]
tr|A0A0D2QZS7|A0A0D2QZS7_GOSRA3.6e-2269.62Importin subunit alpha OS=Gossypium raimondii OX=29730 GN=B456_002G029800 PE=3 S... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR000225Armadillo
IPR011989ARM-like
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006606 protein import into nucleus
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008565 protein transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029057.2MELO3C029057.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029057.2.1MELO3C029057.2.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029057.2.1.exon.1MELO3C029057.2.1.exon.1exon
MELO3C029057.2.1.exon.2MELO3C029057.2.1.exon.2exon
MELO3C029057.2.1.exon.3MELO3C029057.2.1.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029057.2.1.five_prime_UTR.1MELO3C029057.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029057.2.1.CDS.1MELO3C029057.2.1.CDS.1CDS
MELO3C029057.2.1.CDS.2MELO3C029057.2.1.CDS.2CDS
MELO3C029057.2.1.CDS.3MELO3C029057.2.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029057.2.1.three_prime_UTR.1MELO3C029057.2.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3DG3DSA:1.25.10.10coord: 15..109
e-value: 7.8E-24
score: 86.0
IPR000225ArmadilloPFAMPF00514Armcoord: 53..82
e-value: 7.9E-5
score: 22.5
NoneNo IPR availablePANTHERPTHR23316:SF53IMPORTIN SUBUNIT ALPHA-3-RELATEDcoord: 29..107
NoneNo IPR availablePANTHERPTHR23316IMPORTIN ALPHAcoord: 29..107
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 24..94