MELO3C028870.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C028870.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransmembrane protein, putative
Locationchr01 : 27289001 .. 27290120 (+)
Sequence length1120
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATTCAATGAAAGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCCCAATGGATGCCTTTGAAGGCGGTGATATATAAATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACTATATGGAGGTGTTAACTATACATAATTTTTAGTTTTGCGTAGGTGTGGCTCAAACAGTTTATATTACCAACTCATAATCTATAAGAGTCTGACTTTTCATACGATCCTGAAGATTTTCAAGGGAAAAAACATCAAGCAATATGCGCATCGAAATCTGTAAGGAAGGTAAAAGACAAAGGACATTACGAAGGAGTTACTAATGGGTACGAGGCATGGCAGGCAAATAGAAGGAAGAATATAATAGTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTAAGAAGAGCATAGAACTAGAAGAGAAAAAAAGACTATTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAAAGAACTCCAAAAGACCAAAAGTTTCTTAAGAAATCAAGATGAGTTAGAAGAGAATCTTAAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTAGGTCGCAAGATGAATATACTAAAGATTTAGGAAATGAGAATGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAAGGAGAAACATAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAAATGTTGATAGCCTACATCTGAAGATGGTCGAGCGCTCTCAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTGAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGACGAATTACATGCAAATGAAGTTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATTAGACGATTGAATTTCTC

mRNA sequence

ATGCGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATTCAATGAAAGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCCCAATGGATGCCTTTGAAGGCGGTGATATATAAATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACTATATGGAGGTGTTAACTATACATAATTTTTAGTTTTGCGTAGGTGTGGCTCAAACAGTTTATATTACCAACTCATAATCTATAAGAGTCTGACTTTTCATACGATCCTGAAGATTTTCAAGGGAAAAAACATCAAGCAATATGCGCATCGAAATCTGTAAGGAAGGTAAAAGACAAAGGACATTACGAAGGAGTTACTAATGGGTACGAGGCATGGCAGGCAAATAGAAGGAAGAATATAATAGTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTAAGAAGAGCATAGAACTAGAAGAGAAAAAAAGACTATTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAAAGAACTCCAAAAGACCAAAAGTTTCTTAAGAAATCAAGATGAGTTAGAAGAGAATCTTAAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTAGGTCGCAAGATGAATATACTAAAGATTTAGGAAATGAGAATGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAAGGAGAAACATAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAAATGTTGATAGCCTACATCTGAAGATGGTCGAGCGCTCTCAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTGAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGACGAATTACATGCAAATGAAGTTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATTAGACGATTGAATTTCTC

Coding sequence (CDS)

ATGCGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATTCAATGAAAGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCCCAATGGATGCCTTTGAAGGCGGTGATATATAAATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACTATATGGAGGTGTTAACTATACATAA

Protein sequence

MRNTISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYGGVNYT
Homology
[Close]
BLAST of MELO3C028870.2.1 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1   MRNTISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLL 60
           ++N I EF  A W   +  KE W  FFA L SE+V W+A+WM  K ++Y+CG FHS+PLL
Sbjct: 176 LQNPILEFNQADWSQIHPGKEEWSIFFAGLRSEDVEWRARWMSTKPMMYRCGKFHSLPLL 235

Query: 61  GLYGGVNY 69
           G  G V+Y
Sbjct: 236 GPCGCVSY 243

[Close]
BLAST of MELO3C028870.2.1 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-10
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 1   MRNTISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLL 60
           ++N + EF  A W   +  KE W  FFA L  E+V W+A+WM  K ++Y+CG FHS+ LL
Sbjct: 284 LQNLMLEFNQADWSQIHPGKEEWSIFFAGLRPEDVEWRARWMSTKPMMYRCGKFHSLSLL 343

Query: 61  GLYGGVNY 69
           G +G V+Y
Sbjct: 344 GPWGCVSY 351

[Close]
BLAST of MELO3C028870.2.1 vs. NCBI nr
Match: XP_022716541.1 (uncharacterized protein LOC111275424 [Durio zibethinus])

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF    W   ++ K  WL+FF KLTSE+V W+A WM   A++Y CGD   VPLLG++G
Sbjct: 222 IKEFMTKEWRKDWT-KSQWLAFFLKLTSEDVTWRAPWMLPMAILYSCGDESWVPLLGIWG 281

Query: 65  GVNY 69
            V+Y
Sbjct: 282 AVSY 284

[Close]
BLAST of MELO3C028870.2.1 vs. NCBI nr
Match: EOY13886.1 (Uncharacterized protein TCM_032599 [Theobroma cacao])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   VIYKCGD   VPL+G +G
Sbjct: 227 ILEFCESEW-PDYKKKEEWVARLRRLMSIEVTWRAPWMPRMQVIYKCGDKPWVPLMGPWG 286

Query: 65  GVNY 69
            ++Y
Sbjct: 287 AISY 289

[Close]
BLAST of MELO3C028870.2.1 vs. NCBI nr
Match: EOX92985.1 (Uncharacterized protein TCM_001845 [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 283 ILEFCESEW-PDYKRKEEWVARLQRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 342

Query: 65  GVNY 69
            ++Y
Sbjct: 343 AISY 345

[Close]
BLAST of MELO3C028870.2.1 vs. TrEMBL
Match: tr|A0A061FA16|A0A061FA16_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   VIYKCGD   VPL+G +G
Sbjct: 227 ILEFCESEW-PDYKKKEEWVARLRRLMSIEVTWRAPWMPRMQVIYKCGDKPWVPLMGPWG 286

Query: 65  GVNY 69
            ++Y
Sbjct: 287 AISY 289

[Close]
BLAST of MELO3C028870.2.1 vs. TrEMBL
Match: tr|A0A061DK15|A0A061DK15_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001845 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 283 ILEFCESEW-PDYKRKEEWVARLQRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 342

Query: 65  GVNY 69
            ++Y
Sbjct: 343 AISY 345

[Close]
BLAST of MELO3C028870.2.1 vs. TrEMBL
Match: tr|A0A061DPB5|A0A061DPB5_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003795 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 204 ILEFCESEW-PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 263

Query: 65  GVNY 69
            ++Y
Sbjct: 264 AISY 266

[Close]
BLAST of MELO3C028870.2.1 vs. TrEMBL
Match: tr|A0A061DN39|A0A061DN39_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002388 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 188 ILEFCESEW-PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 247

Query: 65  GVNY 69
            ++Y
Sbjct: 248 AISY 250

[Close]
BLAST of MELO3C028870.2.1 vs. TrEMBL
Match: tr|A0A061E8N3|A0A061E8N3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_010930 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 100 ILEFCESEW-PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 159

Query: 65  GVNY 69
            ++Y
Sbjct: 160 AISY 162

The following BLAST results are available for this feature:
BLAST of MELO3C028870.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150759.13.6e-1150.00uncharacterized protein LOC111018820 [Momordica charantia][more]
XP_022147190.18.8e-1045.59uncharacterized protein LOC111016201 [Momordica charantia][more]
XP_022716541.14.4e-0950.00uncharacterized protein LOC111275424 [Durio zibethinus][more]
EOY13886.12.4e-0746.88Uncharacterized protein TCM_032599 [Theobroma cacao][more]
EOX92985.15.4e-0745.31Uncharacterized protein TCM_001845 [Theobroma cacao][more]
BLAST of MELO3C028870.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C028870.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028870.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A061FA16|A0A061FA16_THECC1.6e-0746.88Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1[more]
tr|A0A061DK15|A0A061DK15_THECC3.5e-0745.31Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001845 PE=4 SV=1[more]
tr|A0A061DPB5|A0A061DPB5_THECC3.5e-0745.31Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003795 PE=4 SV=1[more]
tr|A0A061DN39|A0A061DN39_THECC3.5e-0745.31Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002388 PE=4 SV=1[more]
tr|A0A061E8N3|A0A061E8N3_THECC3.5e-0745.31Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_010930 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C028870.2MELO3C028870.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028870.2.1.exon.1MELO3C028870.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028870.2.1.CDS.1MELO3C028870.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028870.2.1.three_prime_UTR.1MELO3C028870.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C028870.2.1MELO3C028870.2.1-proteinpolypeptide