MELO3C028870.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028870.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr01 : 27289001 .. 27290120 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATTCAATGAAAGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCCCAATGGATGCCTTTGAAGGCGGTGATATATAAATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACTATATGGAGGTGTTAACTATACATAATTTTTAGTTTTGCGTAGGTGTGGCTCAAACAGTTTATATTACCAACTCATAATCTATAAGAGTCTGACTTTTCATACGATCCTGAAGATTTTCAAGGGAAAAAACATCAAGCAATATGCGCATCGAAATCTGTAAGGAAGGTAAAAGACAAAGGACATTACGAAGGAGTTACTAATGGGTACGAGGCATGGCAGGCAAATAGAAGGAAGAATATAATAGTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTAAGAAGAGCATAGAACTAGAAGAGAAAAAAAGACTATTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAAAGAACTCCAAAAGACCAAAAGTTTCTTAAGAAATCAAGATGAGTTAGAAGAGAATCTTAAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTAGGTCGCAAGATGAATATACTAAAGATTTAGGAAATGAGAATGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAAGGAGAAACATAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAAATGTTGATAGCCTACATCTGAAGATGGTCGAGCGCTCTCAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTGAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGACGAATTACATGCAAATGAAGTTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATTAGACGATTGAATTTCTC

mRNA sequence

ATGCGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATTCAATGAAAGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCCCAATGGATGCCTTTGAAGGCGGTGATATATAAATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACTATATGGAGGTGTTAACTATACATAATTTTTAGTTTTGCGTAGGTGTGGCTCAAACAGTTTATATTACCAACTCATAATCTATAAGAGTCTGACTTTTCATACGATCCTGAAGATTTTCAAGGGAAAAAACATCAAGCAATATGCGCATCGAAATCTGTAAGGAAGGTAAAAGACAAAGGACATTACGAAGGAGTTACTAATGGGTACGAGGCATGGCAGGCAAATAGAAGGAAGAATATAATAGTTATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAGTGGATTAAGAAGAGCATAGAACTAGAAGAGAAAAAAAGACTATTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAAAGAACTCCAAAAGACCAAAAGTTTCTTAAGAAATCAAGATGAGTTAGAAGAGAATCTTAAGACGTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGTTTGAAAAATGAAAAGACAACATTACAAGCAACAGTAGGTCGCAAGATGAATATACTAAAGATTTAGGAAATGAGAATGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAAGGAGAAACATAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAAATGTTGATAGCCTACATCTGAAGATGGTCGAGCGCTCTCAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTGAAGTGAGAGGATAGTGCAGGAATATGAGTCATTGAAGACGAATTACATGCAAATGAAGTTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATTAGACGATTGAATTTCTC

Coding sequence (CDS)

ATGCGCAACACAATCAGTGAGTTTGGTATGGCAGTTTGGGATCCAACATATTCAATGAAAGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGTCATATGGAAGGCCCAATGGATGCCTTTGAAGGCGGTGATATATAAATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACTATATGGAGGTGTTAACTATACATAA

Protein sequence

MRNTISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYGGVNYT

Homology

[Close]

BLAST of MELO3C028870.2 vs. NCBI nr
Match: XP_022150759.1 (uncharacterized protein LOC111018820 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 1   MRNTISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLL 60
           ++N I EF  A W   +  KE W  FFA L SE+V W+A+WM  K ++Y+CG FHS+PLL
Sbjct: 176 LQNPILEFNQADWSQIHPGKEEWSIFFAGLRSEDVEWRARWMSTKPMMYRCGKFHSLPLL 235

Query: 61  GLYGGVNY 69
           G  G V+Y
Sbjct: 236 GPCGCVSY 243

[Close]

BLAST of MELO3C028870.2 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-10
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1   MRNTISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLL 60
           ++N + EF  A W   +  KE W  FFA L  E+V W+A+WM  K ++Y+CG FHS+ LL
Sbjct: 284 LQNLMLEFNQADWSQIHPGKEEWSIFFAGLRPEDVEWRARWMSTKPMMYRCGKFHSLSLL 343

Query: 61  GLYGGVNY 69
           G +G V+Y
Sbjct: 344 GPWGCVSY 351

[Close]

BLAST of MELO3C028870.2 vs. NCBI nr
Match: XP_022716541.1 (uncharacterized protein LOC111275424 [Durio zibethinus])

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF    W   ++ K  WL+FF KLTSE+V W+A WM   A++Y CGD   VPLLG++G
Sbjct: 222 IKEFMTKEWRKDWT-KSQWLAFFLKLTSEDVTWRAPWMLPMAILYSCGDESWVPLLGIWG 281

Query: 65  GVNY 69
            V+Y
Sbjct: 282 AVSY 284

[Close]

BLAST of MELO3C028870.2 vs. NCBI nr
Match: EOY13886.1 (Uncharacterized protein TCM_032599 [Theobroma cacao])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   VIYKCGD   VPL+G +G
Sbjct: 227 ILEFCESEW-PDYKKKEEWVARLRRLMSIEVTWRAPWMPRMQVIYKCGDKPWVPLMGPWG 286

Query: 65  GVNY 69
            ++Y
Sbjct: 287 AISY 289

[Close]

BLAST of MELO3C028870.2 vs. NCBI nr
Match: EOX92985.1 (Uncharacterized protein TCM_001845 [Theobroma cacao])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 283 ILEFCESEW-PDYKRKEEWVARLQRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 342

Query: 65  GVNY 69
            ++Y
Sbjct: 343 AISY 345

[Close]

BLAST of MELO3C028870.2 vs. TrEMBL
Match: tr|A0A061FA16|A0A061FA16_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   VIYKCGD   VPL+G +G
Sbjct: 227 ILEFCESEW-PDYKKKEEWVARLRRLMSIEVTWRAPWMPRMQVIYKCGDKPWVPLMGPWG 286

Query: 65  GVNY 69
            ++Y
Sbjct: 287 AISY 289

[Close]

BLAST of MELO3C028870.2 vs. TrEMBL
Match: tr|A0A061DK15|A0A061DK15_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001845 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 283 ILEFCESEW-PDYKRKEEWVARLQRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 342

Query: 65  GVNY 69
            ++Y
Sbjct: 343 AISY 345

[Close]

BLAST of MELO3C028870.2 vs. TrEMBL
Match: tr|A0A061DPB5|A0A061DPB5_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003795 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 204 ILEFCESEW-PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 263

Query: 65  GVNY 69
            ++Y
Sbjct: 264 AISY 266

[Close]

BLAST of MELO3C028870.2 vs. TrEMBL
Match: tr|A0A061DN39|A0A061DN39_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002388 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 188 ILEFCESEW-PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 247

Query: 65  GVNY 69
            ++Y
Sbjct: 248 AISY 250

[Close]

BLAST of MELO3C028870.2 vs. TrEMBL
Match: tr|A0A061E8N3|A0A061E8N3_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_010930 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5   ISEFGMAVWDPTYSMKEAWLSFFAKLTSENVIWKAQWMPLKAVIYKCGDFHSVPLLGLYG 64
           I EF  + W P Y  KE W++   +L S  V W+A WMP   V+YKCGD   VPL+G +G
Sbjct: 100 ILEFCESEW-PDYKRKEEWVARLRRLMSIEVTWRAPWMPRMQVMYKCGDKPWVPLMGPWG 159

Query: 65  GVNY 69
            ++Y
Sbjct: 160 AISY 162

The following BLAST results are available for this feature:

BLAST of MELO3C028870.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150759.1	3.6e-11	50.00	uncharacterized protein LOC111018820 [Momordica charantia]	[more]
XP_022147190.1	8.8e-10	45.59	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_022716541.1	4.4e-09	50.00	uncharacterized protein LOC111275424 [Durio zibethinus]	[more]
EOY13886.1	2.4e-07	46.88	Uncharacterized protein TCM_032599 [Theobroma cacao]	[more]
EOX92985.1	5.4e-07	45.31	Uncharacterized protein TCM_001845 [Theobroma cacao]	[more]

BLAST of MELO3C028870.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028870.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028870.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061FA16\|A0A061FA16_THECC	1.6e-07	46.88	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032599 PE=4 SV=1	[more]
tr\|A0A061DK15\|A0A061DK15_THECC	3.5e-07	45.31	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001845 PE=4 SV=1	[more]
tr\|A0A061DPB5\|A0A061DPB5_THECC	3.5e-07	45.31	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_003795 PE=4 SV=1	[more]
tr\|A0A061DN39\|A0A061DN39_THECC	3.5e-07	45.31	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002388 PE=4 SV=1	[more]
tr\|A0A061E8N3\|A0A061E8N3_THECC	3.5e-07	45.31	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_010930 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028870.2.1	MELO3C028870.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028870.2	Cucumber (Gy14) v2	cgybmedB456
MELO3C028870.2	Cucumber (Gy14) v1	cgymedB082
MELO3C028870.2	Cucurbita maxima (Rimu)	cmamedB374
MELO3C028870.2	Cucurbita maxima (Rimu)	cmamedB924
MELO3C028870.2	Cucurbita moschata (Rifu)	cmomedB360
MELO3C028870.2	Cucurbita moschata (Rifu)	cmomedB913
MELO3C028870.2	Cucurbita pepo (Zucchini)	cpemedB146
MELO3C028870.2	Cucurbita pepo (Zucchini)	cpemedB342
MELO3C028870.2	Wild cucumber (PI 183967)	cpimedB513
MELO3C028870.2	Cucumber (Chinese Long) v2	cumedB502
MELO3C028870.2	Bottle gourd (USVL1VR-Ls)	lsimedB197
MELO3C028870.2	Watermelon (Charleston Gray)	medwcgB169
MELO3C028870.2	Watermelon (97103) v1	medwmB196
MELO3C028870.2	Silver-seed gourd	carmedB0012
MELO3C028870.2	Silver-seed gourd	carmedB0084
MELO3C028870.2	Cucumber (Chinese Long) v3	cucmedB527
MELO3C028870.2	Watermelon (97103) v2	medwmbB210
MELO3C028870.2	Wax gourd	medwgoB257