MELO3C028665.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028665.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Myb/SANT-like DNA-binding domain protein
Location	chr01 : 3415820 .. 3418177 (+)
Sequence length	822

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATGCCCCAGACCTTGTGTGTCACCAGAGTACGAGAATGGATCGAAGATGTTTTGCCATTCTGTGCCACCTACTGAGGACCATTGTTGGACTAACGTCGACGGAAGTCGTCGATGTTGGGGAGATGGTAGTAATGTTCCTCCACATTCTTGCGCACGACATGAAAAGTTGTGTCATTCAACGGGAGTTCATGCGGTCAGGTGAAACAATTTTTCGTTATTTCAACATGGTCTTGTTGGCCGTTATTCGACTTCATGACGAGTTTTTGAAAAAACCACAACCAATGCCTAACTGTTGCACAGATCAAAGATGAAGGTGGTTTGAGGTACACATTTGTCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTTTAGTTATGCGTTGCGGAATTGCCTAGGTGCATTAGATGGAATGTACATAAAAGTCAACATTCCAACAAGTGACCGGGCTAGGTATAGAACATGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGAAGATTTCGTTTACATACTTGTCGGTTGGGAAGGATCAGCTGAGGACTCACGCATCCTTCATAATGCCATTTCAAGACCTAATGGCCTGAAGGTGCCCAAGGGTAACTACCAATGGCATTGTACGTATAAATGCAATTTTGCAATTAACAGCTGCGATATTTTAATCGTGCAATGTGATCACAGGCTATTACTACCTGGTTGATGCTGGGTACCAAAATGCAGAGGGTTTCCTAGCATCCTATAGAGGACAACGCTACTACTTACAGGAATAGCTTGGCACTAAAAATGCACCTTCAACGTCGAAAGAGTTCTTCAATATGAAGCATTCGTCTGCTCTTAATGTAATCGAAAGAGCATTCAATGTCTTGAAGGGTCGATAGGTGATACTGCAGGAAAAGTCATACTACCATATAGAAGTCCAATGTCGCACAATACTCGCATGTTGTCTCCTCCATAACCTTATTAATAGAGAGATGACAAACTTTTATATAGAAGACGACATAGATGAGGTTGATTCCACCCACGCAACTACTATCGTCGATGACATACATTACATAGAGACGTCCAATTAGTGAACTCAGTGGAGGACGACCTTGTTGAAGAAATGTTTAGTGACTGGAATTTGCGTAACCAGTAGAACAATTAAATATTCATCGTTCATTTTCATACTTCAGTAGTGATTGCACTGGGTCTTATTTTGTCATAGTTTTCAGAATATATTTGTTTTGAATGTATTGATTACGCAAATAAATTAATGGAAAACTATTTTTCAGAACGAGTTGAAGGTACTATGTATGTAATCATAGGAAATTAATGAAACTAACATGTTTGTGTTTGATTTCTAGCATGGCAAGTTCATCGAGATTACCTTAGCACAATTGGAATAAAGAGAAAGAGGCAGGCCTCGTGCAGTTAGTCAATGCTGGTGGGTGAAGGTCCGACAACGAAACGTTTAGGCCCAGGTACCTAAATCAGCTGGCGAGAATGATAGCCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCAATAGCCGAGTAAAATTGTTGAAGAGAATGTTTCATGCACTTGCGAAGATGCGTGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAAAGAAAGAAGTCCTCGACGAATGGGTTAAGGTGCGTTACTAGTCATTTGAACAATTACTTTAGTATATTTAAAAAAATGGACTAACAATTTAGTATTGCACTTGTACAGAGTCATCCAACGGCCAAAGGCCTCCTCAATAAGTCGTTTCCCCACTATGACAAATTATCGTACGTGTTTGCAAAGATCGTTTAACGAGAGGCTGGACCAAGACTTTTGCAGATGTTGGGTCAAATGATCCTGCTGGGTACGAGGCATTTGTCGCTGACGCAGCGTCGCATACAGACTTCCAGCTAATATACATTCAAGGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAACCGTTTGGGTAAGGTAAGGTCGGTATGTTTCGAGCGGGTCTAAGCGAAAACATAGAGGACAGGCCGCAAACAGTGGGAAAGTAATTCGCACTGCGATTGAGTACATAAATGAACAACTTAACCGCATTGCTGAATGACCTATCCTACAACGTCATGACGCAAGCCAAACACATCAAGAGGTTGTCCGACAGTTGGAGGCCATCTCTGAGCCGACATTGATGGATAGGTGTCGCTTAATGAGTATACTTATGCGTAACGTCAACGACATGGAAGCTTTCTTTGAAGTTCCCAACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACTGA

mRNA sequence

ATGATTCATGCCCCAGACCTTGTGTGTCACCAGAGTACGAGAATGGATCGAAGATGTTTTGCCATTCTGTGCCACCTACTGAGGACCATTGTTGGACTAACGTCGACGGAAGTCGTCGATGTTGGGGAGATGGTAGTAATGTTCCTCCACATTCTTGCGCACGACATGAAAAGTTGTGTCATTCAACGGGAGTTCATGCGGTCAGAACGAGTTGAAGGTACTATGTCCGACAACGAAACGTTTAGGCCCAGGTACCTAAATCAGCTGGCGAGAATGATAGCCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCAATAGCCGAGTAAAATTGTTGAAGAGAATGTTTCATGCACTTGCGAAGATGCGTGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAAAGAAAGAAGTCCTCGACGAATGGGTTAAGAGTCATCCAACGGCCAAAGGCCTCCTCAATAAGTCGTTTCCCCACTATGACAAATTATCAGGCTGGACCAAGACTTTTGCAGATGTTGGGTCAAATGATCCTGCTGGGTACGAGGCATTTGTCGCTGACGCAGCGTCGCATACAGACTTCCAGCTAATATACATTCAAGGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAACCGTTTGGTTGGAGGCCATCTCTGAGCCGACATTGATGGATAGGTGTCGCTTAATGAGTATACTTATGCGTAACGTCAACGACATGGAAGCTTTCTTTGAAGTTCCCAACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACTGA

Coding sequence (CDS)

ATGATTCATGCCCCAGACCTTGTGTGTCACCAGAGTACGAGAATGGATCGAAGATGTTTTGCCATTCTGTGCCACCTACTGAGGACCATTGTTGGACTAACGTCGACGGAAGTCGTCGATGTTGGGGAGATGGTAGTAATGTTCCTCCACATTCTTGCGCACGACATGAAAAGTTGTGTCATTCAACGGGAGTTCATGCGGTCAGAACGAGTTGAAGGTACTATGTCCGACAACGAAACGTTTAGGCCCAGGTACCTAAATCAGCTGGCGAGAATGATAGCCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCAATAGCCGAGTAAAATTGTTGAAGAGAATGTTTCATGCACTTGCGAAGATGCGTGGCCCAACTTGCAATGGTTTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAAAGAAAGAAGTCCTCGACGAATGGGTTAAGAGTCATCCAACGGCCAAAGGCCTCCTCAATAAGTCGTTTCCCCACTATGACAAATTATCAGGCTGGACCAAGACTTTTGCAGATGTTGGGTCAAATGATCCTGCTGGGTACGAGGCATTTGTCGCTGACGCAGCGTCGCATACAGACTTCCAGCTAATATACATTCAAGGATTGAACATGTCGCCTGATGAATTGATGGGAACAAGAACCGTTTGGTTGGAGGCCATCTCTGAGCCGACATTGATGGATAGGTGTCGCTTAATGAGTATACTTATGCGTAACGTCAACGACATGGAAGCTTTCTTTGAAGTTCCCAACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACTGA

Protein sequence

MIHAPDLVCHQSTRMDRRCFAILCHLLRTIVGLTSTEVVDVGEMVVMFLHILAHDMKSCVIQREFMRSERVEGTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCNGFGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLSGWTKTFADVGSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRTVWLEAISEPTLMDRCRLMSILMRNVNDMEAFFEVPNNMKYPYCSIILQEN

Homology

[Close]

BLAST of MELO3C028665.2.1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 280.8 bits (717), Expect = 5.0e-72
Identity = 151/272 (55.51%), Postives = 173/272 (63.60%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCNGF 132
           G  SDN TFRP YLNQLARM+AFKIPGSN+HASTI+SR+KL+KRMFHALA+MRGP C+GF
Sbjct: 387 GWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGF 446

Query: 133 GWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFADV 192
           GWNDE+KCIVA+KEV D+W  SHP AKGLLNKSF HYD+LS          G  ++FAD+
Sbjct: 447 GWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 506

Query: 193 GSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRTV------------------ 252
           GSNDP GY+A  ADA   TDF  +Y  GLNMSPD+LM TRT                   
Sbjct: 507 GSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPG 566

Query: 253 -------------------------W------------------LEAISEPTLMDRCRLM 274
                                    W                  LEAI E TLMDRCRLM
Sbjct: 567 HATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLM 626

HSP 2 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 29 TIVGLTSTEVVDVGEMVVMFLHILAHDMKSCVIQREFMRS 69
          TI GLTSTEVVDV EMV MFLHILAHD+KS VI+REFMRS
Sbjct: 57 TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 96

[Close]

BLAST of MELO3C028665.2.1 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 5.7e-60
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 71  VEGTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCN 130
           V G  SDN TFRP YLNQLARM+AFKIPGSN+HASTI+SR+KL+KRMFHALA+MRGP C+
Sbjct: 26  VGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCS 85

Query: 131 GFGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFA 190
           GFGWNDE+KCIVA+KEV D+WVKSHPTAKGLLNKSF HYD+LS          G  ++FA
Sbjct: 86  GFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFA 145

Query: 191 DVGSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRT 224
           D+GSNDP GY+AF ADA   TDF  +Y   LNMSPD+LM TRT
Sbjct: 146 DIGSNDPPGYDAFAADAMPDTDFPPMYSLRLNMSPDDLMETRT 188

[Close]

BLAST of MELO3C028665.2.1 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-53
Identity = 109/161 (67.70%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCNGF 132
           G  SDN TF P YLNQLARM+AFKIPG N+HASTI+SR+KLLKRMFHALA+MRGP C+GF
Sbjct: 28  GWRSDNGTFHPGYLNQLARMMAFKIPGCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGF 87

Query: 133 GWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFADV 192
           GWNDE+KCIVA+KE       SHP AKGLLNKSF HYD+LS          G  + FAD+
Sbjct: 88  GWNDEKKCIVAEKE-------SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADI 147

Query: 193 GSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRT 224
           GSNDPAGY+AFVADAA  T+F  +Y   LNMSPD+LM TRT
Sbjct: 148 GSNDPAGYDAFVADAAPDTNFSPMYSPRLNMSPDDLMETRT 181

[Close]

BLAST of MELO3C028665.2.1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 6.8e-37
Identity = 80/162 (49.38%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNV-HASTINSRVKLLKRMFHALAKMRGPTCNG 132
           G  SDN TF+P YL QL RM+A K+PG+N+  +STI+  VK LK+ +HA+A+MRGP+C+G
Sbjct: 32  GWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSG 91

Query: 133 FGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFAD 192
           FGWN+E +CI+A++++ D W+KSHP AKGLL+KSFP+YD LS            ++TF +
Sbjct: 92  FGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPN 151

Query: 193 VGSNDPAGYEAFVADAASH-TDFQLIYIQGLNMSPDELMGTR 223
           VGSN    +   +    SH  D   +Y QG++MSPDE+ G R
Sbjct: 152 VGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIR 193

[Close]

BLAST of MELO3C028665.2.1 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 81/162 (50.00%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNVHAST-INSRVKLLKRMFHALAKMRGPTCNG 132
           G  SDN TFRP YL QL RM+A K+ G  V A+T I+ R+K LKR F A+A+M GP C+G
Sbjct: 349 GWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSG 408

Query: 133 FGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFAD 192
           FGWNDE+KCIVA+KE+ D WV+S P AKGLLN  FP+YD+L+           + +TFAD
Sbjct: 409 FGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFAD 468

Query: 193 VGSNDP-AGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTR 223
           VGSN+P  GY+ F      + DF  +Y +G+++  D++  +R
Sbjct: 469 VGSNEPGGGYDRFDM-GDGNEDFPPVYSRGVDILQDDVRASR 509

HSP 2 Score: 107.1 bits (266), Expect = 9.8e-20
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MIHAPDLVCHQSTRMDRRCFAILCHLLRTIVGLTSTEVVDVGEMVVMFLHILAHDMKSCV 60
          MIH  DLVC QSTRMDRR FAILCHLLR + GL+STE+VDV EMV MFLH+LAHD+K+ V
Sbjct: 1  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 61 IQREFMRS 69
          IQ+EF+RS
Sbjct: 61 IQQEFVRS 68

[Close]

BLAST of MELO3C028665.2.1 vs. TAIR10
Match: AT4G02210.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 3.2e-04
Identity = 21/66 (31.82%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 107 INSRVKLLKRMFHALAKMRGPTCNGFGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSF 166
           + +R K L+ +F ++  +     +GF W+D ++ +VA   V DE++K HP ++    KS 
Sbjct: 66  LKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 167 PHYDKL 173
           P Y  L
Sbjct: 126 PCYKDL 129

[Close]

BLAST of MELO3C028665.2.1 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 151/272 (55.51%), Postives = 173/272 (63.60%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCNGF 132
           G  SDN TFRP YLNQLARM+AFKIPGSN+HASTI+SR+KL+KRMFHALA+MRGP C+GF
Sbjct: 387 GWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGF 446

Query: 133 GWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFADV 192
           GWNDE+KCIVA+KEV D+W  SHP AKGLLNKSF HYD+LS          G  ++FAD+
Sbjct: 447 GWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 506

Query: 193 GSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRTV------------------ 252
           GSNDP GY+A  ADA   TDF  +Y  GLNMSPD+LM TRT                   
Sbjct: 507 GSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPG 566

Query: 253 -------------------------W------------------LEAISEPTLMDRCRLM 274
                                    W                  LEAI E TLMDRCRLM
Sbjct: 567 HATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLM 626

HSP 2 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 29 TIVGLTSTEVVDVGEMVVMFLHILAHDMKSCVIQREFMRS 69
          TI GLTSTEVVDV EMV MFLHILAHD+KS VI+REFMRS
Sbjct: 57 TIAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 96

[Close]

BLAST of MELO3C028665.2.1 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 115/163 (70.55%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 71  VEGTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCN 130
           V G  SDN TFRP YLNQLARM+AFKIPGSN+HASTI+SR+KL+KRMFHALA+MRGP C+
Sbjct: 26  VGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCS 85

Query: 131 GFGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFA 190
           GFGWNDE+KCIVA+KEV D+WVKSHPTAKGLLNKSF HYD+LS          G  ++FA
Sbjct: 86  GFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFA 145

Query: 191 DVGSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRT 224
           D+GSNDP GY+AF ADA   TDF  +Y   LNMSPD+LM TRT
Sbjct: 146 DIGSNDPPGYDAFAADAMPDTDFPPMYSLRLNMSPDDLMETRT 188

[Close]

BLAST of MELO3C028665.2.1 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 109/161 (67.70%), Postives = 124/161 (77.02%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNVHASTINSRVKLLKRMFHALAKMRGPTCNGF 132
           G  SDN TF P YLNQLARM+AFKIPG N+HASTI+SR+KLLKRMFHALA+MRGP C+GF
Sbjct: 28  GWRSDNGTFHPGYLNQLARMMAFKIPGCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGF 87

Query: 133 GWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFADV 192
           GWNDE+KCIVA+KE       SHP AKGLLNKSF HYD+LS          G  + FAD+
Sbjct: 88  GWNDEKKCIVAEKE-------SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADI 147

Query: 193 GSNDPAGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTRT 224
           GSNDPAGY+AFVADAA  T+F  +Y   LNMSPD+LM TRT
Sbjct: 148 GSNDPAGYDAFVADAAPDTNFSPMYSPRLNMSPDDLMETRT 181

[Close]

BLAST of MELO3C028665.2.1 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.5e-37
Identity = 80/162 (49.38%), Postives = 112/162 (69.14%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNV-HASTINSRVKLLKRMFHALAKMRGPTCNG 132
           G  SDN TF+P YL QL RM+A K+PG+N+  +STI+  VK LK+ +HA+A+MRGP+C+G
Sbjct: 32  GWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSG 91

Query: 133 FGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFAD 192
           FGWN+E +CI+A++++ D W+KSHP AKGLL+KSFP+YD LS            ++TF +
Sbjct: 92  FGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPN 151

Query: 193 VGSNDPAGYEAFVADAASH-TDFQLIYIQGLNMSPDELMGTR 223
           VGSN    +   +    SH  D   +Y QG++MSPDE+ G R
Sbjct: 152 VGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIR 193

[Close]

BLAST of MELO3C028665.2.1 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35
Identity = 81/162 (50.00%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 73  GTMSDNETFRPRYLNQLARMIAFKIPGSNVHAST-INSRVKLLKRMFHALAKMRGPTCNG 132
           G  SDN TFRP YL QL RM+A K+ G  V A+T I+ R+K LKR F A+A+M GP C+G
Sbjct: 349 GWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSG 408

Query: 133 FGWNDEQKCIVAKKEVLDEWVKSHPTAKGLLNKSFPHYDKLS----------GWTKTFAD 192
           FGWNDE+KCIVA+KE+ D WV+S P AKGLLN  FP+YD+L+           + +TFAD
Sbjct: 409 FGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFAD 468

Query: 193 VGSNDP-AGYEAFVADAASHTDFQLIYIQGLNMSPDELMGTR 223
           VGSN+P  GY+ F      + DF  +Y +G+++  D++  +R
Sbjct: 469 VGSNEPGGGYDRFDM-GDGNEDFPPVYSRGVDILQDDVRASR 509

HSP 2 Score: 107.1 bits (266), Expect = 6.5e-20
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MIHAPDLVCHQSTRMDRRCFAILCHLLRTIVGLTSTEVVDVGEMVVMFLHILAHDMKSCV 60
          MIH  DLVC QSTRMDRR FAILCHLLR + GL+STE+VDV EMV MFLH+LAHD+K+ V
Sbjct: 1  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 61 IQREFMRS 69
          IQ+EF+RS
Sbjct: 61 IQQEFVRS 68

The following BLAST results are available for this feature:

BLAST of MELO3C028665.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34114.1	5.0e-72	55.51	retrotransposon protein [Cucumis melo subsp. melo]	[more]
XP_008466949.1	5.7e-60	70.55	PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]	[more]
XP_008459131.1	2.3e-53	67.70	PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo]	[more]
XP_008441954.1	6.8e-37	49.38	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]	[more]
ADN33754.1	1.7e-35	50.00	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C028665.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02210.1	3.2e-04	31.82	unknown protein	[more]

BLAST of MELO3C028665.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028665.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCB5\|E5GCB5_CUCME	3.3e-72	55.51	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3CTN6\|A0A1S3CTN6_CUCME	3.8e-60	70.55	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]
tr\|A0A1S3C8Z4\|A0A1S3C8Z4_CUCME	1.5e-53	67.70	uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=...	[more]
tr\|A0A1S3B4L3\|A0A1S3B4L3_CUCME	4.5e-37	49.38	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
tr\|E5GBB2\|E5GBB2_CUCME	1.1e-35	50.00	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C028665.2	MELO3C028665.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C028665.2.1	MELO3C028665.2.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028665.2.1.CDS.1	MELO3C028665.2.1.CDS.1	CDS
MELO3C028665.2.1.CDS.2	MELO3C028665.2.1.CDS.2	CDS
MELO3C028665.2.1.CDS.3	MELO3C028665.2.1.CDS.3	CDS
MELO3C028665.2.1.CDS.4	MELO3C028665.2.1.CDS.4	CDS
MELO3C028665.2.1.CDS.5	MELO3C028665.2.1.CDS.5	CDS
MELO3C028665.2.1.CDS.6	MELO3C028665.2.1.CDS.6	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028665.2.1.exon.1	MELO3C028665.2.1.exon.1	exon
MELO3C028665.2.1.exon.2	MELO3C028665.2.1.exon.2	exon
MELO3C028665.2.1.exon.3	MELO3C028665.2.1.exon.3	exon
MELO3C028665.2.1.exon.4	MELO3C028665.2.1.exon.4	exon
MELO3C028665.2.1.exon.5	MELO3C028665.2.1.exon.5	exon
MELO3C028665.2.1.exon.6	MELO3C028665.2.1.exon.6	exon

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704:SF62	SUBFAMILY NOT NAMED	coord: 76..172
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 76..172