MELO3C028636.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028636.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 8069442 .. 8069627 (+)
Sequence length	186

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGAAACACCTAGCCGCAACAATGGAACCTCGAGCGACAAGGAGGGAGATTTAAGAGGATTTGATGAGGGAGAACACAGAACGAAAGGGAAAAGCGTTTCGCACGAACACGGATTGAGGGGAAAGCCTGAACACGGGTTGAAGATGATAAGGCAGGAGAGAGTTTTAGCCATTTGAGGG

mRNA sequence

ATGGCAAGCGAAACACCTAGCCGCAACAATGGAACCTCGAGCGACAAGGAGGGAGATTTAAGAGGATTTGATGAGGGAGAACACAGAACGAAAGGGAAAAGCGTTTCGCACGAACACGGATTGAGGGGAAAGCCTGAACACGGGTTGAAGATGATAAGGCAGGAGAGAGTTTTAGCCATTTGAGGG

Coding sequence (CDS)

ATGGCAAGCGAAACACCTAGCCGCAACAATGGAACCTCGAGCGACAAGGAGGGAGATTTAAGAGGATTTGATGAGGGAGAACACAGAACGAAAGGGAAAAGCGTTTCGCACGAACACGGATTGAGGGGAAAGCCTGAACACGGGTTGAAGATGATAAGGCAGGAGAGAGTTTTAGCCATTTGA

Protein sequence

MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI

Homology

[Close]

BLAST of MELO3C028636.2.1 vs. NCBI nr
Match: ADN34191.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SETPSRNN TSS K+GDLRGFDEGEHRTKGK V +EHGLRGKPE+GLK IRQ RV A+
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]

BLAST of MELO3C028636.2.1 vs. NCBI nr
Match: ADN33713.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-16
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SET SRNNG SS KEGDLRGFDE EH+ K K VSHEHGLRGKPEHGLK IRQ RVL +
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

[Close]

BLAST of MELO3C028636.2.1 vs. TrEMBL
Match: tr|E5GCJ2|E5GCJ2_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.3e-17
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SETPSRNN TSS K+GDLRGFDEGEHRTKGK V +EHGLRGKPE+GLK IRQ RV A+
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]

BLAST of MELO3C028636.2.1 vs. TrEMBL
Match: tr|E5GB71|E5GB71_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-16
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SET SRNNG SS KEGDLRGFDE EH+ K K VSHEHGLRGKPEHGLK IRQ RVL +
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

The following BLAST results are available for this feature:

BLAST of MELO3C028636.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34191.1	1.1e-16	80.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
ADN33713.1	7.2e-16	78.33	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C028636.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028636.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028636.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCJ2\|E5GCJ2_CUCME	7.3e-17	80.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GB71\|E5GB71_CUCME	4.7e-16	78.33	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C028636.2	MELO3C028636.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028636.2.1.exon.1	MELO3C028636.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028636.2.1.CDS.1	MELO3C028636.2.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C028636.2.1.three_prime_UTR.1	MELO3C028636.2.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C028636.2.1	MELO3C028636.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50