MELO3C028636.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028636.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 8069442 .. 8069627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGAAACACCTAGCCGCAACAATGGAACCTCGAGCGACAAGGAGGGAGATTTAAGAGGATTTGATGAGGGAGAACACAGAACGAAAGGGAAAAGCGTTTCGCACGAACACGGATTGAGGGGAAAGCCTGAACACGGGTTGAAGATGATAAGGCAGGAGAGAGTTTTAGCCATTTGAGGG

mRNA sequence

ATGGCAAGCGAAACACCTAGCCGCAACAATGGAACCTCGAGCGACAAGGAGGGAGATTTAAGAGGATTTGATGAGGGAGAACACAGAACGAAAGGGAAAAGCGTTTCGCACGAACACGGATTGAGGGGAAAGCCTGAACACGGGTTGAAGATGATAAGGCAGGAGAGAGTTTTAGCCATTTGAGGG

Coding sequence (CDS)

ATGGCAAGCGAAACACCTAGCCGCAACAATGGAACCTCGAGCGACAAGGAGGGAGATTTAAGAGGATTTGATGAGGGAGAACACAGAACGAAAGGGAAAAGCGTTTCGCACGAACACGGATTGAGGGGAAAGCCTGAACACGGGTTGAAGATGATAAGGCAGGAGAGAGTTTTAGCCATTTGA

Protein sequence

MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI

Homology

[Close]

BLAST of MELO3C028636.2 vs. NCBI nr
Match: ADN34191.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SETPSRNN TSS K+GDLRGFDEGEHRTKGK V +EHGLRGKPE+GLK IRQ RV A+
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]

BLAST of MELO3C028636.2 vs. NCBI nr
Match: ADN33713.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-16
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SET SRNNG SS KEGDLRGFDE EH+ K K VSHEHGLRGKPEHGLK IRQ RVL +
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

[Close]

BLAST of MELO3C028636.2 vs. TrEMBL
Match: tr|E5GCJ2|E5GCJ2_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.3e-17
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SETPSRNN TSS K+GDLRGFDEGEHRTKGK V +EHGLRGKPE+GLK IRQ RV A+
Sbjct: 1  MTSETPSRNNETSSGKKGDLRGFDEGEHRTKGKRVLYEHGLRGKPENGLKTIRQGRVSAV 60

[Close]

BLAST of MELO3C028636.2 vs. TrEMBL
Match: tr|E5GB71|E5GB71_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-16
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 1  MASETPSRNNGTSSDKEGDLRGFDEGEHRTKGKSVSHEHGLRGKPEHGLKMIRQERVLAI 60
          M SET SRNNG SS KEGDLRGFDE EH+ K K VSHEHGLRGKPEHGLK IRQ RVL +
Sbjct: 1  MTSETLSRNNGASSGKEGDLRGFDEEEHKMKEKRVSHEHGLRGKPEHGLKTIRQGRVLTV 60

The following BLAST results are available for this feature:

BLAST of MELO3C028636.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34191.1	1.1e-16	80.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
ADN33713.1	7.2e-16	78.33	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C028636.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C028636.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028636.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCJ2\|E5GCJ2_CUCME	7.3e-17	80.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GB71\|E5GB71_CUCME	4.7e-16	78.33	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028636.2.1	MELO3C028636.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028636.2	Cucumber (Chinese Long) v3	cucmedB529
MELO3C028636.2	Watermelon (97103) v2	medwmbB216
MELO3C028636.2	Wax gourd	medwgoB259
MELO3C028636.2	Cucumber (Gy14) v2	cgybmedB458
MELO3C028636.2	Cucumber (Gy14) v1	cgymedB083
MELO3C028636.2	Cucurbita maxima (Rimu)	cmamedB020
MELO3C028636.2	Cucurbita maxima (Rimu)	cmamedB456
MELO3C028636.2	Cucurbita moschata (Rifu)	cmomedB008
MELO3C028636.2	Cucurbita moschata (Rifu)	cmomedB444
MELO3C028636.2	Cucurbita pepo (Zucchini)	cpemedB597
MELO3C028636.2	Cucurbita pepo (Zucchini)	cpemedB848
MELO3C028636.2	Wild cucumber (PI 183967)	cpimedB514
MELO3C028636.2	Cucumber (Chinese Long) v2	cumedB503
MELO3C028636.2	Bottle gourd (USVL1VR-Ls)	lsimedB198
MELO3C028636.2	Watermelon (Charleston Gray)	medwcgB176
MELO3C028636.2	Watermelon (97103) v1	medwmB204