MELO3C026981T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026981T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Collectin-12
Location	chr4 : 25419983 .. 25420375 (+)
Sequence length	393

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATATGAGATCCTTAACAAAGAACCTGCAGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATCGATAGTGAGTGAAAGAATCACAATGAATCTACCAATGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGGAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATCCAAACTGAAGAGAAGGTGGGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGTGATCGACACAAATTCAAGAAG

mRNA sequence

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATATGAGATCCTTAACAAAGAACCTGCAGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATCGATAGTGAGTGAAAGAATCACAATGAATCTACCAATGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGGAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATCCAAACTGAAGAGAAGGTGGGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGTGATCGACACAAATTCAAGAAG

Coding sequence (CDS)

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATATGAGATCCTTAACAAAGAACCTGCAGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATCGATAGTGAGTGAAAGAATCACAATGAATCTACCAATGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGGAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATCCAAACTGAAGAGAAGGTGGGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGTGATCGACACAAATTCAAGAAG

Protein sequence

MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVETMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK

Homology

[Close]

BLAST of MELO3C026981T1 vs. NCBI nr
Match: gi|659113968|ref|XP_008456845.1| (PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 7.0e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 79  MMKSIVEGGSTPMERIETEEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK 132
           MMKSIVEGGSTPMERIET+EQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK
Sbjct: 1   MMKSIVEGGSTPMERIETKEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK 53

[Close]

BLAST of MELO3C026981T1 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M QT+IEE++E+FEQEV G+KKEL+K+P IE  +  LT+N++++R+Q+EK QQ +L  +E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  TMVKEKSIVSERI----TMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGEEQTKK 120
              KE+S+  ER+    T N P +KS                +  +  +   V E  TKK
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKS----------------KNDKASSSRDVEEINTKK 119

Query: 121 IGIEEDISDRHKFKK 132
              +E+ +DR KFKK
Sbjct: 121 NEPDENSNDRSKFKK 119

[Close]

BLAST of MELO3C026981T1 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-16
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M QT+IEE+LE  +QE+ GMKKELSK+PAIE ++  + K+L+L+R+Q+EK QQLL   +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  TMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEE----QRKEIQTEEKVGEEQT-K 120
           T  KE+S +S   T          E  +   E+++ +E      K I +    G ++  +
Sbjct: 61  TNSKERSTMSRLET----------ESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDR 120

Query: 121 KIGIEEDISDRHKFKK 132
           +I  ++ +SDR+KFKK
Sbjct: 121 RIDGDDGVSDRNKFKK 126

[Close]

BLAST of MELO3C026981T1 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M  T+IEE++E F+ E+ G+KKELSK+  I  ++  + KNL+L+R Q EK QQ+LL  +E
Sbjct: 1   MVLTRIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFME 60

Query: 61  TMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGE-EQTKKIGI 120
           +  KE+S++SER+T      +S V   ST   +        +I  +  +GE    +K   
Sbjct: 61  SNAKERSMMSERLT------ESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDN 120

Query: 121 EEDISDRHKFKK 132
           +E+  DR+KFKK
Sbjct: 121 DENAGDRNKFKK 126

[Close]

BLAST of MELO3C026981T1 vs. NCBI nr
Match: gi|659131696|ref|XP_008465808.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X2 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M  T+IEE++E F+ E+ G+KKELSK+  I  ++  + KNL+L+R Q EK QQ+LL  +E
Sbjct: 1   MVLTRIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFME 60

Query: 61  TMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGE-EQTKKIGI 120
           +  KE+S++SER+T      +S V   ST   +        +I  +  +GE    +K   
Sbjct: 61  SNAKERSMMSERLT------ESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDN 120

Query: 121 EEDISDRHKFKK 132
           +E+  DR+KFKK
Sbjct: 121 DENAGDRNKFKK 126

The following BLAST results are available for this feature:

BLAST of MELO3C026981T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113968\|ref\|XP_008456845.1\|	7.0e-20	98.11	PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo]	[more]
gi\|659134102\|ref\|XP_008467029.1\|	1.2e-16	40.00	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	4.7e-16	39.71	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659131700\|ref\|XP_008465811.1\|	5.2e-15	38.64	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo]	[more]
gi\|659131696\|ref\|XP_008465808.1\|	5.2e-15	38.64	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026981	MELO3C026981	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026981T1	MELO3C026981T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026981T1.cds1	MELO3C026981T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..23 score: -coord: 27..54 scor