MELO3C026981 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026981
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Collectin-12
Location	chr4 : 25419983 .. 25420375 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATATGAGATCCTTAACAAAGAACCTGCAGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATCGATAGTGAGTGAAAGAATCACAATGAATCTACCAATGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGGAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATCCAAACTGAAGAGAAGGTGGGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGTGATCGACACAAATTCAAGAAG

mRNA sequence

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATATGAGATCCTTAACAAAGAACCTGCAGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATCGATAGTGAGTGAAAGAATCACAATGAATCTACCAATGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGGAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATCCAAACTGAAGAGAAGGTGGGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGTGATCGACACAAATTCAAGAAG

Coding sequence (CDS)

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATATGAGATCCTTAACAAAGAACCTGCAGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATCGATAGTGAGTGAAAGAATCACAATGAATCTACCAATGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGGAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATCCAAACTGAAGAGAAGGTGGGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGTGATCGACACAAATTCAAGAAG

Protein sequence

MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVETMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK

Homology

[Close]

BLAST of MELO3C026981 vs. NCBI nr
Match: gi|659113968|ref|XP_008456845.1| (PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 7.0e-20
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1


Query: 79  MMKSIVEGGSTPMERIETEEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK 132
           MMKSIVEGGSTPMERIET+EQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK
Sbjct: 1   MMKSIVEGGSTPMERIETKEQRKEIQTEEKVGEEQTKKIGIEEDISDRHKFKK 53

[Close]

BLAST of MELO3C026981 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M QT+IEE++E+FEQEV G+KKEL+K+P IE  +  LT+N++++R+Q+EK QQ +L  +E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  TMVKEKSIVSERI----TMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGEEQTKK 120
              KE+S+  ER+    T N P +KS                +  +  +   V E  TKK
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKS----------------KNDKASSSRDVEEINTKK 119

Query: 121 IGIEEDISDRHKFKK 132
              +E+ +DR KFKK
Sbjct: 121 NEPDENSNDRSKFKK 119

[Close]

BLAST of MELO3C026981 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.7e-16
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M QT+IEE+LE  +QE+ GMKKELSK+PAIE ++  + K+L+L+R+Q+EK QQLL   +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  TMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEE----QRKEIQTEEKVGEEQT-K 120
           T  KE+S +S   T          E  +   E+++ +E      K I +    G ++  +
Sbjct: 61  TNSKERSTMSRLET----------ESPAKEFEKMKGKEDDASSSKAIDSGRNFGADRNDR 120

Query: 121 KIGIEEDISDRHKFKK 132
           +I  ++ +SDR+KFKK
Sbjct: 121 RIDGDDGVSDRNKFKK 126

[Close]

BLAST of MELO3C026981 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M  T+IEE++E F+ E+ G+KKELSK+  I  ++  + KNL+L+R Q EK QQ+LL  +E
Sbjct: 1   MVLTRIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFME 60

Query: 61  TMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGE-EQTKKIGI 120
           +  KE+S++SER+T      +S V   ST   +        +I  +  +GE    +K   
Sbjct: 61  SNAKERSMMSERLT------ESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDN 120

Query: 121 EEDISDRHKFKK 132
           +E+  DR+KFKK
Sbjct: 121 DENAGDRNKFKK 126

[Close]

BLAST of MELO3C026981 vs. NCBI nr
Match: gi|659131696|ref|XP_008465808.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X2 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.2e-15
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 1


Query: 1   MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENMRSLTKNLQLLRIQAEKNQQLLLQCVE 60
           M  T+IEE++E F+ E+ G+KKELSK+  I  ++  + KNL+L+R Q EK QQ+LL  +E
Sbjct: 1   MVLTRIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFME 60

Query: 61  TMVKEKSIVSERITMNLPMMKSIVEGGSTPMERIETEEQRKEIQTEEKVGE-EQTKKIGI 120
           +  KE+S++SER+T      +S V   ST   +        +I  +  +GE    +K   
Sbjct: 61  SNAKERSMMSERLT------ESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDN 120

Query: 121 EEDISDRHKFKK 132
           +E+  DR+KFKK
Sbjct: 121 DENAGDRNKFKK 126

The following BLAST results are available for this feature:

BLAST of MELO3C026981 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113968\|ref\|XP_008456845.1\|	7.0e-20	98.11	PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo]	[more]
gi\|659134102\|ref\|XP_008467029.1\|	1.2e-16	40.00	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	4.7e-16	39.71	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659131700\|ref\|XP_008465811.1\|	5.2e-15	38.64	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo]	[more]
gi\|659131696\|ref\|XP_008465808.1\|	5.2e-15	38.64	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026981T1	MELO3C026981T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..23 score: -coord: 27..54 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026981	Cucurbita maxima (Rimu)	cmameB226
MELO3C026981	Cucurbita maxima (Rimu)	cmameB756
MELO3C026981	Cucurbita moschata (Rifu)	cmomeB748
MELO3C026981	Wild cucumber (PI 183967)	cpimeB199
MELO3C026981	Wild cucumber (PI 183967)	cpimeB214
MELO3C026981	Watermelon (Charleston Gray)	mewcgB315
MELO3C026981	Watermelon (97103) v1	mewmB346
MELO3C026981	Cucurbita pepo (Zucchini)	cpemeB566
MELO3C026981	Cucurbita pepo (Zucchini)	cpemeB576
MELO3C026981	Cucurbita pepo (Zucchini)	cpemeB798
MELO3C026981	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C026981	Cucumber (Gy14) v2	cgybmeB172
MELO3C026981	Cucumber (Gy14) v2	cgybmeB184
MELO3C026981	Silver-seed gourd	carmeB0277
MELO3C026981	Cucumber (Chinese Long) v3	cucmeB205
MELO3C026981	Cucumber (Chinese Long) v3	cucmeB218
MELO3C026981	Watermelon (97103) v2	mewmbB316
MELO3C026981	Wax gourd	mewgoB374
MELO3C026981	Cucumber (Gy14) v1	cgymeB317
MELO3C026981	Cucumber (Gy14) v1	cgymeB558