MELO3C026973T3 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026973T3
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	60S ribosomal protein L18a
Location	chr7 : 6710095 .. 6712550 (-)
Sequence length	769

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCGGCCCAGTTGTGGAGCAGCAGTTTAGGGTTTTACTTCATTCTCAGCACGACTTTTACGCTTCGTAGCAGTTTGGCTATCGGCCGTCGAGAGGTAAATCGAAGCACCGATCTCTTTCAGATCTTCGAGTTTCAAAATGGTTACATTCAGGGTAAGGTTCTGCTTCAGGAACACTCAAATTTTATCTAATCGATTGTTTTTTGGCGTTTTTTACTTTTTTTTTTTTTTTCTGATTCGAATGTGTTATAGCTGTTCATTAGATTCACCTCTTCCACTTCGAAGTGAGTTTGCAAGGCATTGATCTGTTCTTTTTCACTTTTTGTTTATTTGCTTTATCGGGACGCAGTTTCACCAGTACCAGGTTGTGGGGAGGGCTCTTCCTTCTGAATCGGATGAGCATCCCAAGATCTATCGGATGAAGCTATGGGCTACCAACGAAGTCCGTGCCAAATCCAAGTTCTGGTATGTTGTTATTCTTTCCGTCGATGTTTCTTTATCTTTTTGATTGGTTACTGGGTAGAAAATGAAAGCGAGTAAGGGTTTTTTTACTTTATGTTTTCATGATCTTGGTTCATGTAGTTAGAAGATTTATGAGTGGATTTGACGTTTTCAACGTGATTGTTTCTAAAAATTCTGGAGGGATTTTTGAATCATTATTAATGGTTTGATCCAGCAGTGTTAATTTTTATAGTAGCACAATGAGATTTTATTCATGGGTTTAGTTCTATTGATATATTTACTATTTTCAAAAGCAGGAAGGCTTTTGTATAATTATGGTTATTTAGATTCTATAGTCCTAGTTCAATAGTTCATATGGCGGTGAGGTTTATTGTCCGATTTGATTTAAGGTTTCACCATTGTCCCTTTGCAACTCCATAGAATGTTTGACTCAACAAATGGAAAAGGATTTTTTTGGCCTTCTTTTTTGTTTTGTTTTTGTTTTCTGTGTTTGAATATGATAACAATAAATGTGTCTGGAACATGCTTCTATATTTGAAAAACTGTAAAAATTAGTTTTCAAATTCTAAATTTTAAATCTTGGTGAGAATCCAGATGTGGAAAGCACATTAAAGAAATCGTGTGAAGCTAGCTTAGTTTGTATTTTGATTTCTTGATACTTGCATGTGGATGATAGGTACTTTTTGAGGAAGTTGAAGAAAGTTAAGAAAAGCAATGGTCAAATTCTTGCCATTAATGAGGTATTGGGTCTGGAACATGCTTCTATACTCTATGTCTTTATCGTGTTACCGTGACAGTAGTAAGCTGAGAGCTTTTTCAGCTTCTTTGGTCTTTAACCCAAATGTCTAGTTCCTTTTGTCTATGAACTTCTATTTTATTTATAGACATTATATTTGGCATATGATTCCTTAAAATGAACAAAATTAGACAACTCCTGATATATTCATTATTGATCGTCTACCAGTCTTGATGTTTGCTTGTTGTTGTTCTTCGTTTCTTCTGAAGTTAGCTATCATGCGTTCTTTGAATTTGTTTGCATATATATGCTATATGTATGTTTACTATTTGTGCAAGTATTTATAGATATATTTATTTGAACTTTTTTGTTCTTTGTGAATGGTTATTTGCAAAGATGTTTTACCGTTCGATGAACGGTCAACAACTTTAGTGGTATAGATTTCTATTTGATTGCTTTTGTTTCCCATATAGTAGTGTACTTCATTCAGTAATTTCATGCAAGATTCTGGCCTGCACATAAGCACACCTTGTCCTCCTTAGTTCTCCCCCTTTTTTTCCTACATGTTCTAAACCATAGTACTATTAGTGATCTTCTTGCATTCATTTTTCAATTTGCAGATTTTTGAAAAGAACCCAACAAAGATCAAGAACTATGGTATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAGTACCGCGACACAACATTGAATGGTGCCGTCGAGCAAATGTATACCGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACCGTTCCAGCAAAACTCTGCAAGAGGGAAAGTACGAAACAGTTTCACAACTCAAAGATCAAATTCCCGTTGGTGTATAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAGCCCAACTTGTTCATGTAATTCTGCTGATCTTGATTATTATTGGTTAGATTATTATTGATTAGATTAATAGCAACTTCGAGAAGTAGAAGAAATTTATTTGAAACAATTCGTTTTTCTAGCACAATTATTCCTCTGTTGTGGAGTTCATGAGATGAGTTTGTCAATTTTGATTGGATTAATATCTAAATCAAATTTTCTTGCATCTCTGTTTTTGAAGCTTTTCTCCCTGAGTGTTGCAAGTTGTAGTCTTGAATTCTTGTGTTGGGTTGGAACCTTTGTACCTTTAGAATGGAAGGTTATTCTTAATTACCGCT

mRNA sequence

CCCTCGGCCCAGTTGTGGAGCAGCAGTTTAGGGTTTTACTTCATTCTCAGCACGACTTTTACGCTTCGTAGCAGTTTGGCTATCGGCCGTCGAGAGGTAAATCGAAGCACCGATCTCTTTCAGATCTTCGAGTTTCAAAATGGTTACATTCAGGTTTCACCAGTACCAGGTTGTGGGGAGGGCTCTTCCTTCTGAATCGGATGAGCATCCCAAGATCTATCGGATGAAGCTATGGGCTACCAACGAAGTCCGTGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTTAAGAAAAGCAATGGTCAAATTCTTGCCATTAATGAGATTTTTGAAAAGAACCCAACAAAGATCAAGAACTATGGTATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAGTACCGCGACACAACATTGAATGGTGCCGTCGAGCAAATGTATACCGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACCGTTCCAGCAAAACTCTGCAAGAGGGAAAGTACGAAACAGTTTCACAACTCAAAGATCAAATTCCCGTTGGTGTATAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAGCCCAACTTGTTCATCTTTTCTCCCTGAGTGTTGCAAGTTGTAGTCTTGAATTCTTGTGTTGGGTTGGAACCTTTGTACCTTTAGAATGGAAGGTTATTCTTAATTACCGCT

Coding sequence (CDS)

ATGGTTACATTCAGGTTTCACCAGTACCAGGTTGTGGGGAGGGCTCTTCCTTCTGAATCGGATGAGCATCCCAAGATCTATCGGATGAAGCTATGGGCTACCAACGAAGTCCGTGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTTAAGAAAAGCAATGGTCAAATTCTTGCCATTAATGAGATTTTTGAAAAGAACCCAACAAAGATCAAGAACTATGGTATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAGTACCGCGACACAACATTGAATGGTGCCGTCGAGCAAATGTATACCGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACCGTTCCAGCAAAACTCTGCAAGAGGGAAAGTACGAAACAGTTTCACAACTCAAAGATCAAATTCCCGTTGGTGTATAAGAAGGTGAGGCCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAGCCCAACTTGTTCATCTTTTCTCCCTGA

Protein sequence

MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFIFSP*

Homology

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BLAST of MELO3C026973T3 vs. Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.1e-94
Identity = 164/178 (92.13%), Postives = 171/178 (96.07%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGR LPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKRES+KQFHNSKIKFPLV +K+RPP+RKLKT YKAS+PNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.5e-92
Identity = 162/178 (91.01%), Postives = 169/178 (94.94%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLV++KVRPP+RKLKTTYKA+KPNLF+
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 7.3e-92
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 1


Query: 4   FRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAI 63
           FRFHQYQVVGRALP+E+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           QIIKTATVPAKLCKRE TKQFHNSKIKFPLV++KVRPP+RKLKTTYKASKPNLF+
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=1 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 4.8e-91
Identity = 160/178 (89.89%), Postives = 166/178 (93.26%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M  FRFHQYQVVGR LP+ +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLVY+KVRPPTRKLKTT+KAS+PNLF+
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. Swiss-Prot
Match: R18A1_ARATH (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.2e-89
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATVPA LCKRESTKQFHNSKIKFPLV++KVRPPTRKLKTT+KA+KPNLF+
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TrEMBL
Match: A0A0B0MTV5_GOSAR (60S ribosomal protein L18a OS=Gossypium arboreum GN=F383_25447 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 3.4e-96
Identity = 170/178 (95.51%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKR+STKQFHNSKIKFPLV+KKVRPPTRKLKTTYKASKPNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRDSTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TrEMBL
Match: A0A0D2RZN7_GOSRA (60S ribosomal protein L18a OS=Gossypium raimondii GN=B456_006G092900 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 3.4e-96
Identity = 170/178 (95.51%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKR+STKQFHNSKIKFPLV+KKVRPPTRKLKTTYKASKPNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRDSTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TrEMBL
Match: A9PA10_POPTR (60S ribosomal protein L18a OS=Populus trichocarpa GN=POPTR_1064s00200g PE=2 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.5e-96
Identity = 170/178 (95.51%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLV+KKVRPP+RKLKTTYKAS+PNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TrEMBL
Match: A0A0B0NV55_GOSAR (60S ribosomal protein L18a OS=Gossypium arboreum GN=F383_22194 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.5e-96
Identity = 171/178 (96.07%), Postives = 176/178 (98.88%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRA P+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRAHPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLV+KKVRPPTRKLKTTYKASKPNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TrEMBL
Match: A0A0S3S3B8_PHAAN (60S ribosomal protein L18a OS=Vigna angularis var. angularis GN=Vigan.05G069200 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.0e-95
Identity = 168/178 (94.38%), Postives = 176/178 (98.88%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E+D+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLV+KKVRPP+RKLKTTYKA KPNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TAIR10
Match: AT2G34480.1 (AT2G34480.1 Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 340.1 bits (871), Expect = 8.3e-94
Identity = 162/178 (91.01%), Postives = 169/178 (94.94%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M  FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLV++KVRPP+RKLKTTYKA+KPNLF+
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TAIR10
Match: AT3G14600.1 (AT3G14600.1 Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 337.8 bits (865), Expect = 4.1e-93
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 1


Query: 4   FRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAI 63
           FRFHQYQVVGRALP+E+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+LAI
Sbjct: 4   FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAI 63

Query: 64  NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCI 123
           NEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCI
Sbjct: 64  NEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCI 123

Query: 124 QIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           QIIKTATVPAKLCKRE TKQFHNSKIKFPLV++KVRPP+RKLKTTYKASKPNLF+
Sbjct: 124 QIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TAIR10
Match: AT1G29965.1 (AT1G29965.1 Ribosomal protein L18ae/LX family protein)

HSP 1 Score: 330.5 bits (846), Expect = 6.6e-91
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATVPA LCKRESTKQFHNSKIKFPLV++KVRPPTRKLKTT+KA+KPNLF+
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. TAIR10
Match: AT1G29970.2 (AT1G29970.2 60S ribosomal protein L18A-1)

HSP 1 Score: 327.4 bits (838), Expect = 5.6e-90
Identity = 155/172 (90.12%), Postives = 163/172 (94.77%), Query Frame = 1


Query: 7   HQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEI 66
           HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LAINEI
Sbjct: 141 HQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEI 200

Query: 67  FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRCPCIQII 126
           FEKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQII
Sbjct: 201 FEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQII 260

Query: 127 KTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           KTATVPA LCKRESTKQFHNSKIKFPLV++KVRPPTRKLKTT+KA+KPNLF+
Sbjct: 261 KTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

[Close]

BLAST of MELO3C026973T3 vs. NCBI nr
Match: gi|659130979|ref|XP_008465452.1| (PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Cucumis melo])

HSP 1 Score: 369.0 bits (946), Expect = 4.7e-99
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI
Sbjct: 574 MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 633

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC
Sbjct: 634 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 693

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLF+
Sbjct: 694 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFM 751

[Close]

BLAST of MELO3C026973T3 vs. NCBI nr
Match: gi|778730888|ref|XP_011659876.1| (PREDICTED: 60S ribosomal protein L18a [Cucumis sativus])

HSP 1 Score: 359.4 bits (921), Expect = 3.8e-96
Identity = 171/178 (96.07%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MV+FRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLV+KKVRPPTRKLKTTYKASKPNLF+
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. NCBI nr
Match: gi|823171408|ref|XP_012484793.1| (PREDICTED: 60S ribosomal protein L18a [Gossypium raimondii])

HSP 1 Score: 359.0 bits (920), Expect = 4.9e-96
Identity = 170/178 (95.51%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKR+STKQFHNSKIKFPLV+KKVRPPTRKLKTTYKASKPNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRDSTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. NCBI nr
Match: gi|566254205|ref|XP_006387417.1| (60S ribosomal protein L18a-1 [Populus trichocarpa])

HSP 1 Score: 358.6 bits (919), Expect = 6.4e-96
Identity = 170/178 (95.51%), Postives = 177/178 (99.44%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRALP+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLV+KKVRPP+RKLKTTYKAS+PNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of MELO3C026973T3 vs. NCBI nr
Match: gi|728837079|gb|KHG16522.1| (60S ribosomal L18a [Gossypium arboreum])

HSP 1 Score: 358.6 bits (919), Expect = 6.4e-96
Identity = 171/178 (96.07%), Postives = 176/178 (98.88%), Query Frame = 1


Query: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
           MVTFRFHQYQVVGRA P+ESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRAHPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFI 179
           PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLV+KKVRPPTRKLKTTYKASKPNLF+
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

The following BLAST results are available for this feature:

BLAST of MELO3C026973T3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL18A_CASSA	2.1e-94	92.13	60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1	[more]
R18A2_ARATH	1.5e-92	91.01	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=2 SV=2	[more]
R18A3_ARATH	7.3e-92	91.43	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1	[more]
RL18A_ORYSJ	4.8e-91	89.89	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=1 SV=1	[more]
R18A1_ARATH	1.2e-89	88.20	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=1	[more]

BLAST of MELO3C026973T3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0MTV5_GOSAR	3.4e-96	95.51	60S ribosomal protein L18a OS=Gossypium arboreum GN=F383_25447 PE=3 SV=1	[more]
A0A0D2RZN7_GOSRA	3.4e-96	95.51	60S ribosomal protein L18a OS=Gossypium raimondii GN=B456_006G092900 PE=3 SV=1	[more]
A9PA10_POPTR	4.5e-96	95.51	60S ribosomal protein L18a OS=Populus trichocarpa GN=POPTR_1064s00200g PE=2 SV=1	[more]
A0A0B0NV55_GOSAR	4.5e-96	96.07	60S ribosomal protein L18a OS=Gossypium arboreum GN=F383_22194 PE=3 SV=1	[more]
A0A0S3S3B8_PHAAN	1.0e-95	94.38	60S ribosomal protein L18a OS=Vigna angularis var. angularis GN=Vigan.05G069200 ...	[more]

BLAST of MELO3C026973T3 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34480.1	8.3e-94	91.01	Ribosomal protein L18ae/LX family protein	[more]
AT3G14600.1	4.1e-93	91.43	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	6.6e-91	88.20	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	5.6e-90	90.12	60S ribosomal protein L18A-1	[more]

BLAST of MELO3C026973T3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130979\|ref\|XP_008465452.1\|	4.7e-99	99.44	PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Cucumis melo]	[more]
gi\|778730888\|ref\|XP_011659876.1\|	3.8e-96	96.07	PREDICTED: 60S ribosomal protein L18a [Cucumis sativus]	[more]
gi\|823171408\|ref\|XP_012484793.1\|	4.9e-96	95.51	PREDICTED: 60S ribosomal protein L18a [Gossypium raimondii]	[more]
gi\|566254205\|ref\|XP_006387417.1\|	6.4e-96	95.51	60S ribosomal protein L18a-1 [Populus trichocarpa]	[more]
gi\|728837079\|gb\|KHG16522.1\|	6.4e-96	96.07	60S ribosomal L18a [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021138	Ribosomal_L18a/L20_eukaryotes
IPR023573	Ribosomal_L18a//L18Ae/LX

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026973	MELO3C026973	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026973T3	MELO3C026973T3-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026973T3.cds5	MELO3C026973T3.cds5	CDS
MELO3C026973T3.cds4	MELO3C026973T3.cds4	CDS
MELO3C026973T3.cds3	MELO3C026973T3.cds3	CDS
MELO3C026973T3.cds2	MELO3C026973T3.cds2	CDS
MELO3C026973T3.cds1	MELO3C026973T3.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIR	PIRSF002190	Ribosomal_L18a	coord: 1..178 score: 1.4
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 score: 1.8
None	No IPR available	GENE3D	G3DSA:3.10.20.10		coord: 75..140 score: 3.
None	No IPR available	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..179 score: 9.3E
None	No IPR available	PANTHER	PTHR10052:SF12	SUBFAMILY NOT NAMED	coord: 1..179 score: 9.3E
None	No IPR available	unknown	SSF160374	RplX-like	coord: 71..146 score: 2.09