MELO3C026739T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C026739T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhospholipid N-methyltransferase
Locationchr4 : 24988032 .. 24988397 (+)
Sequence length366
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAGCTACTCCTCCTCTTCTTCCTCCTGGAAATCATTTTCCACAGAAAGTGGAGCGAAAATCCGGCGAGAAAATTATCAGAATGGGCATTTTGGCCGTAATTGGAGTATTGTTGCCATTTCCGTACTACTACGTCTTATGGAATCGTCCACAGTTGTGGGTGAACTTGTGCGGCAAATCGCGCGAACCCTGCAAGTTGATGGCCCAGGTCTCGGTTTTTCTCAAGTTGCTTCAGTTCCTCTCCATCATTCATGTCTCCTCCTTCTCATGGCCCCCGCCTCTATACTTCTGGCCTCTCATGGCTTTCGGACAGTTCTTGAACTTCAGGAATCTCTCTCTCTCTCTCTCTCTGATGTGCTGA

mRNA sequence

ATGAGAAGAGCTACTCCTCCTCTTCTTCCTCCTGGAAATCATTTTCCACAGAAAGTGGAGCGAAAATCCGGCGAGAAAATTATCAGAATGGGCATTTTGGCCGTAATTGGAGTATTGTTGCCATTTCCGTACTACTACGTCTTATGGAATCGTCCACAGTTGTGGGTGAACTTGTGCGGCAAATCGCGCGAACCCTGCAAGTTGATGGCCCAGGTCTCGGTTTTTCTCAAGTTGCTTCAGTTCCTCTCCATCATTCATGTCTCCTCCTTCTCATGGCCCCCGCCTCTATACTTCTGGCCTCTCATGGCTTTCGGACAGTTCTTGAACTTCAGGAATCTCTCTCTCTCTCTCTCTCTGATGTGCTGA

Coding sequence (CDS)

ATGAGAAGAGCTACTCCTCCTCTTCTTCCTCCTGGAAATCATTTTCCACAGAAAGTGGAGCGAAAATCCGGCGAGAAAATTATCAGAATGGGCATTTTGGCCGTAATTGGAGTATTGTTGCCATTTCCGTACTACTACGTCTTATGGAATCGTCCACAGTTGTGGGTGAACTTGTGCGGCAAATCGCGCGAACCCTGCAAGTTGATGGCCCAGGTCTCGGTTTTTCTCAAGTTGCTTCAGTTCCTCTCCATCATTCATGTCTCCTCCTTCTCATGGCCCCCGCCTCTATACTTCTGGCCTCTCATGGCTTTCGGACAGTTCTTGAACTTCAGGAATCTCTCTCTCTCTCTCTCTCTGATGTGCTGA

Protein sequence

MRRATPPLLPPGNHFPQKVERKSGEKIIRMGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSSFSWPPPLYFWPLMAFGQFLNFRNLSLSLSLMC*
Homology
[Close]
BLAST of MELO3C026739T1 vs. Swiss-Prot
Match: PLMT_ARATH (Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana GN=PLMT PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MG+LA IGVLLPFP+Y+ LW   Q WVNLCG+ R+P  +MA+VS  LK  Q LS+  V+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
            SWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  LSWPPPLYFWPLMAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. TrEMBL
Match: A0A0A0LCJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710860 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI AVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. TrEMBL
Match: A0A0D2R7K2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G136500 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.8e-31
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILA IGVLLPFP+YY+LW  PQ WVNLCGK R+P K+MA VS F+KL+QF+S+  VSS
Sbjct: 1   MGILAGIGVLLPFPFYYLLWTYPQSWVNLCGKGRDPSKVMALVSHFIKLIQFVSLFSVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL AFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLFAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. TrEMBL
Match: B9RGL2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1441570 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-30
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MG+LA +GVLLPFPYYY LW  PQ WVNLCGK  +PCK+MA VS FLKLLQF+S+  VSS
Sbjct: 1   MGVLAAVGVLLPFPYYYWLWTNPQSWVNLCGKGSDPCKVMAYVSHFLKLLQFISLFSVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSW PPLYFWPL  FGQFLN R
Sbjct: 61  FSWLPPLYFWPLFGFGQFLNVR 82

[Close]
BLAST of MELO3C026739T1 vs. TrEMBL
Match: A0A103XYB1_CYNCS (Phosphatidylethanolamine N-methyltransferase/Methylene-fatty-acyl-phospholipid synthase OS=Cynara cardunculus var. scolymus GN=Ccrd_022720 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-30
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILA  GV+ PFP+YY LWN PQ WVNLCGK R+PCK+MA VS FLKL+QFLS+  VS+
Sbjct: 1   MGILACFGVVTPFPFYYWLWNHPQTWVNLCGKGRDPCKIMAMVSHFLKLVQFLSLFSVST 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL   GQFLN R
Sbjct: 61  FSWPPPLYFWPLFLLGQFLNLR 82

[Close]
BLAST of MELO3C026739T1 vs. TrEMBL
Match: A0A0B0MVI6_GOSAR (Putative methylene-fatty-acyl-phospholipid synthase OS=Gossypium arboreum GN=F383_32328 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.3e-30
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI+A IGVLLPFP+YY+LW  PQ WVNLCGK R+P K+MA VS F+KL+QF+S+   SS
Sbjct: 1   MGIVAGIGVLLPFPFYYLLWTYPQSWVNLCGKGRDPSKVMALVSHFIKLIQFVSLFSGSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL AFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLFAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. TAIR10
Match: AT1G80860.2 (AT1G80860.2 phospholipid N-methyltransferase)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-29
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MG+LA IGVLLPFP+Y+ LW   Q WVNLCG+ R+P  +MA+VS  LK  Q LS+  V+S
Sbjct: 1   MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
            SWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  LSWPPPLYFWPLMAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. NCBI nr
Match: gi|659130401|ref|XP_008465151.1| (PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   MRRATPPLLPPGNHFPQKVERKSGEKIIRMGILAVIGVLLPFPYYYVLWNRPQLWVNLCG 60
           MRRATPPLLPPGNHFPQKVERKSGEKIIRMGILAVIGVLLPFPYYYVLWNRPQLWVNLCG
Sbjct: 1   MRRATPPLLPPGNHFPQKVERKSGEKIIRMGILAVIGVLLPFPYYYVLWNRPQLWVNLCG 60

Query: 61  KSREPCKLMAQVSVFLKLLQFLSIIHVSSFSWPPPLYFWPLMAFGQFLNFR 112
           KSREPCKLMAQVSVFLKLLQFLSIIHVSSFSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  KSREPCKLMAQVSVFLKLLQFLSIIHVSSFSWPPPLYFWPLMAFGQFLNFR 111

[Close]
BLAST of MELO3C026739T1 vs. NCBI nr
Match: gi|449439767|ref|XP_004137657.1| (PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 3.0e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI AVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. NCBI nr
Match: gi|700203526|gb|KGN58659.1| (hypothetical protein Csa_3G710860 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 3.0e-41
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGI AVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS
Sbjct: 1   MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPLMAFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLMAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. NCBI nr
Match: gi|823238474|ref|XP_012451890.1| (PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Gossypium raimondii])

HSP 1 Score: 141.7 bits (356), Expect = 8.3e-31
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILA IGVLLPFP+YY+LW  PQ WVNLCGK R+P K+MA VS F+KL+QF+S+  VSS
Sbjct: 1   MGILAGIGVLLPFPFYYLLWTYPQSWVNLCGKGRDPSKVMALVSHFIKLIQFVSLFSVSS 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL AFGQFLNFR
Sbjct: 61  FSWPPPLYFWPLFAFGQFLNFR 82

[Close]
BLAST of MELO3C026739T1 vs. NCBI nr
Match: gi|976912568|gb|KVH99046.1| (Phosphatidylethanolamine N-methyltransferase/Methylene-fatty-acyl-phospholipid synthase [Cynara cardunculus var. scolymus])

HSP 1 Score: 138.7 bits (348), Expect = 7.0e-30
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89
           MGILA  GV+ PFP+YY LWN PQ WVNLCGK R+PCK+MA VS FLKL+QFLS+  VS+
Sbjct: 1   MGILACFGVVTPFPFYYWLWNHPQTWVNLCGKGRDPCKIMAMVSHFLKLVQFLSLFSVST 60

Query: 90  FSWPPPLYFWPLMAFGQFLNFR 112
           FSWPPPLYFWPL   GQFLN R
Sbjct: 61  FSWPPPLYFWPLFLLGQFLNLR 82

The following BLAST results are available for this feature:
BLAST of MELO3C026739T1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PLMT_ARATH2.2e-2868.29Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana GN... [more]
BLAST of MELO3C026739T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCJ2_CUCSA2.1e-4198.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710860 PE=4 SV=1[more]
A0A0D2R7K2_GOSRA5.8e-3176.83Uncharacterized protein OS=Gossypium raimondii GN=B456_010G136500 PE=4 SV=1[more]
B9RGL2_RICCO4.9e-3074.39Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1441570 PE=4 SV=1[more]
A0A103XYB1_CYNCS4.9e-3073.17Phosphatidylethanolamine N-methyltransferase/Methylene-fatty-acyl-phospholipid s... [more]
A0A0B0MVI6_GOSAR8.3e-3074.39Putative methylene-fatty-acyl-phospholipid synthase OS=Gossypium arboreum GN=F38... [more]
BLAST of MELO3C026739T1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80860.21.3e-2968.29 phospholipid N-methyltransferase[more]
BLAST of MELO3C026739T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130401|ref|XP_008465151.1|1.1e-59100.00PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo][more]
gi|449439767|ref|XP_004137657.1|3.0e-4198.78PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis sativu... [more]
gi|700203526|gb|KGN58659.1|3.0e-4198.78hypothetical protein Csa_3G710860 [Cucumis sativus][more]
gi|823238474|ref|XP_012451890.1|8.3e-3176.83PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Gossypium raim... [more]
gi|976912568|gb|KVH99046.1|7.0e-3073.17Phosphatidylethanolamine N-methyltransferase/Methylene-fatty-acyl-phospholipid s... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR024960PEMT/MFAP
Vocabulary: Biological Process
TermDefinition
GO:0006644phospholipid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008170N-methyltransferase activity
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006644 phospholipid metabolic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0032259 methylation
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0006566 threonine metabolic process
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0008170 N-methyltransferase activity
molecular_function GO:0080101 phosphatidyl-N-dimethylethanolamine N-methyltransferase activity
molecular_function GO:0000773 phosphatidyl-N-methylethanolamine N-methyltransferase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C026739MELO3C026739gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C026739T1MELO3C026739T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026739T1.cds1MELO3C026739T1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024960Phosphatidyl-N-methylethanolamine/N-methyltransferasePANTHERPTHR15458FAMILY NOT NAMEDcoord: 30..111
score: 2.9