MELO3C026143.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C026143.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr03 : 18230775 .. 18232582 (-)
Sequence length690
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAACTATTTGGTTCATAATCAATGGATTGAAGAGTCAAGAAGATTCCTTATTGTTGGTAGAGCGAAGGAGAATAGATCCAATATCTAAACCGAAAAAAGTGAAATAAAAAATTAAATATATATATATGGAGATTCAAGTGAAAAGAATAGGAAACGAGAGATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAGTATGTATCTCTTCCACTCTCTTCTGATTTTTATTTATTTTAAGTACAATAATCACTCTCTACGCTTTGGACCCAAAGAAAACATTTCAACATTGAATTACTCCATTTCAAATTCTAACTTTTCTTTTTTTGGACATTTATAGAGATACTTAATAACTCCCAATATAGAACACTTTCAAATTCCAACACATATATATTGAATCCACCACTCCAAAGTCAACAAAACACTCTCTTTTGTTTATATTTTAGGGGTAATTATAGGAATGACTATAAATATTTTAAGATTTTTTTAATTTAGCAAGATTTTTTTTTTTTTTTTAATTTTCAAATATAGCAATTTAAGTCTGATTTTGTGTTTTTATTACGCTAAATTTACTCTATTTAGTGTATTAGTTTTATATTAATTATATATCCCATATACTTTTTAAGTTTGATTTTGTGTTTGGATTGCTTAGATAGATGCGAAATAAAACTTTTAGATATGAAATATGTTTCTTTTTTTTTTTTTTTTTTTTAAGCAACACAAAAATTTGAATTGGTTTTATTTTGATTTTACTATGCAACAAAAATACTGTAAGAGATGGGTCCATTTAAAAATTAAATAAAATTAATTAAGCTAAATTGGAAAGTTGAGATCATATAATTGATATACGGAATAAAAGAGGAAGGATGGTTATCTAAAGTCATCCAATTGAATATTGAAAAAGTAGACACTAGTAGCTAAATCTCCTCACATCTATATGATTCTATAGACTTAAATTAATTATTGAAAGTTATTATACATAGTTAACGGAACTATCTCTATCGACAATCAATTTTTCTGATTCTGTTATACACATTCATTTTGTCTGTCTTTCTGTCTGTTTTTCTCTTTTTTTTTTTAGATTTAATATAGGTTCAGATAGTTGGAGTTGTTGACGTTGTTTATATAATATATATAAAAAAGTTGAAATAATTACAAATAATTATAAGGGGAGGTAGTTTAGTCACATACCTGTCGTTCAATCTTCTTGGACTCAAGTTCAAGCCTCGGTATTTTCCTTTTTTTTTTTCGGATTTAATTTTGATGAATTATAAAGTGCATTCGCCTCACTGATCCAATGTGTGCTGTTTTGTAGAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATCGATCCTCCTCGCTTCCTCCTCTAAATGACCATCATAATAATGCTCCTCAAAATCCCACGTCACATAATTTACTATTTCTGTTGTATGCATTTGGACATTTTCTCTCTCTCTTTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTACTGATTCTGTG

mRNA sequence

AAAGAACTATTTGGTTCATAATCAATGGATTGAAGAGTCAAGAAGATTCCTTATTGTTGGTAGAGCGAAGGAGAATAGATCCAATATCTAAACCGAAAAAAGTGAAATAAAAAATTAAATATATATATATGGAGATTCAAGTGAAAAGAATAGGAAACGAGAGATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATCGATCCTCCTCGCTTCCTCCTCTAAATGACCATCATAATAATGCTCCTCAAAATCCCACGTCACATAATTTACTATTTCTGTTGTATGCATTTGGACATTTTCTCTCTCTCTTTTTTTATATGTTTTATAAATAACCTTTAAATTGAATGACTATTTTGAAGTACTGATTCTGTG

Coding sequence (CDS)

ATGATTCCGAAGAGGGTTGCTTTGTATTTGCCTATCATCTTCAAGTCTCTCCTACAAATTCCGATGAGCATCTCAAGATTTTTGAGGTTTCAACTTTTTAGAGAGCAACCACATGTGTCTTCCTCCGCTTCCACCGTCGCACCTCCTCAAACTTCAAGGGGTATCGTCACATTAAGGAAGGATAGAAGGAAAAGGAATTCGCACATAAAACCATGCAGGAGTAATGGAGGAGGTGGCCAAACCAACTCACTCAAATGCGACCGTATTGATCCTCCTCGCTTCCTCCGCACATAA

Protein sequence

MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAPPQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFLRT
Homology
[Close]
BLAST of MELO3C026143.2.1 vs. NCBI nr
Match: XP_011656472.1 (PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAPPQTSRGIVTLRK 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAPPQTSRGI TLRK
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPPQTSRGI-TLRK 72

Query: 61  DRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFL 96
           DRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+
Sbjct: 73  DRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFV 106

[Close]
BLAST of MELO3C026143.2.1 vs. NCBI nr
Match: XP_004138359.2 (PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus] >KGN45904.1 hypothetical protein Csa_6G020180 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 89/108 (82.41%), Postives = 92/108 (85.19%), Query Frame = 0 

Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAP------------ 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAP            
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  -PQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFL 96
            PQTSRGI TLRKDRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+
Sbjct: 73  TPQTSRGI-TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFV 119

[Close]
BLAST of MELO3C026143.2.1 vs. TrEMBL
Match: tr|A0A0A0KAN8|A0A0A0KAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.3e-38
Identity = 89/108 (82.41%), Postives = 92/108 (85.19%), Query Frame = 0 

Query: 1   MIPKRVALYLPIIFKSLLQIPMSISRFLRFQLFREQPHVSSSASTVAP------------ 60
           MIPKRVA YLPIIFKSLLQIPMSISRFLRFQLFR+QPH SSSASTVAP            
Sbjct: 13  MIPKRVASYLPIIFKSLLQIPMSISRFLRFQLFRQQPHDSSSASTVAPDPKILMAANIQA 72

Query: 61  -PQTSRGIVTLRKDRRKRNSHIKPCRSNGGGGQTNSLKCDRIDPPRFL 96
            PQTSRGI TLRKDRRKR+SHIKPCRSNGGGGQTNSLKCDRIDPPRF+
Sbjct: 73  TPQTSRGI-TLRKDRRKRDSHIKPCRSNGGGGQTNSLKCDRIDPPRFV 119

The following BLAST results are available for this feature:
BLAST of MELO3C026143.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011656472.12.3e-4093.68PREDICTED: uncharacterized protein LOC101208209 isoform X2 [Cucumis sativus][more]
XP_004138359.21.4e-3782.41PREDICTED: uncharacterized protein LOC101208209 isoform X1 [Cucumis sativus] >KG... [more]
BLAST of MELO3C026143.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C026143.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C026143.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAN8|A0A0A0KAN8_CUCSA9.3e-3882.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020180 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C026143.2MELO3C026143.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C026143.2.1MELO3C026143.2.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026143.2.1.five_prime_UTR.1MELO3C026143.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026143.2.1.exon.2MELO3C026143.2.1.exon.2exon
MELO3C026143.2.1.exon.1MELO3C026143.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026143.2.1.CDS.2MELO3C026143.2.1.CDS.2CDS
MELO3C026143.2.1.CDS.1MELO3C026143.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026143.2.1.three_prime_UTR.1MELO3C026143.2.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..97