MELO3C026080T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C026080T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr12 : 14794679 .. 14795261 (-)
Sequence length522
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATGTTTGGTGTAGACGACAAAGGTAATGAAGTAGAGATATTCGATAACATGGAATCGAGAGAGGAAGAGATTATAGAGTTGCAAAAGGCGGAAGTTGTAAATGCTGTGAAGCTATCGTTGGACTCAATGATGAGGTTTTCATCACCAGGAACCCTAAAAATGAAAGGGATGATTGAAAATGAAGTAGTGATAGTTCTTATCGATTGTGGAGCTACCTACAATTTCCTTGCGCAGAAATTGGTCGAGGAACTGAAGCTCCCCTTGGTAGAAACGATGCACCCTGGAGTGATAATGGGGAAGGGATCTGCAGCCAAGGGAAAAGGTATGTGTAGAGTTGTGTTGACAATAGGGGAATTGATGATTTGAGAATTTTCTTCCTCTAGAGTTGGGAGATGTGGAGGTAGTCTTGGCGAGCACTAACAATGGGAGTCTCAGAAGTAGATTGGTGAGCACTAACGATGACTATAGGGAAGGGAGTCGAGAAGACTGTGTTACAAGGTGGTCCATCGCTAACCCAAGTGAAAGTAACCTTGAAGGAAATGATGAAAGCCTAGGAAGACTGACCAAGGGTTCCTAG

mRNA sequence

ATGAGGATGTTTGGTGTAGACGACAAAGGTAATGAAGTAGAGATATTCGATAACATGGAATCGAGAGAGGAAGAGATTATAGAGTTGCAAAAGGCGGAAGTTGTAAATGCTGTGAAGCTATCGTTGGACTCAATGATGAGGTTTTCATCACCAGGAACCCTAAAAATGAAAGGGATGATTGAAAATGAAGTAGTGATAGTTCTTATCGATTGTGGAGCTACCTACAATTTCCTTGCGCAGAAATTGGTCGAGGAACTGAAGCTCCCCTTGGTAGAAACGATGCACCCTGGAGTGATAATGGGGAAGGGATCTGCAGCCAAGGGAAAAGAGTTGGGAGATGTGGAGGTAGTCTTGGCGAGCACTAACAATGGGAGTCTCAGAAGTAGATTGGTGAGCACTAACGATGACTATAGGGAAGGGAGTCGAGAAGACTGTGTTACAAGGTGGTCCATCGCTAACCCAAGTGAAAGTAACCTTGAAGGAAATGATGAAAGCCTAGGAAGACTGACCAAGGGTTCCTAG

Coding sequence (CDS)

ATGAGGATGTTTGGTGTAGACGACAAAGGTAATGAAGTAGAGATATTCGATAACATGGAATCGAGAGAGGAAGAGATTATAGAGTTGCAAAAGGCGGAAGTTGTAAATGCTGTGAAGCTATCGTTGGACTCAATGATGAGGTTTTCATCACCAGGAACCCTAAAAATGAAAGGGATGATTGAAAATGAAGTAGTGATAGTTCTTATCGATTGTGGAGCTACCTACAATTTCCTTGCGCAGAAATTGGTCGAGGAACTGAAGCTCCCCTTGGTAGAAACGATGCACCCTGGAGTGATAATGGGGAAGGGATCTGCAGCCAAGGGAAAAGAGTTGGGAGATGTGGAGGTAGTCTTGGCGAGCACTAACAATGGGAGTCTCAGAAGTAGATTGGTGAGCACTAACGATGACTATAGGGAAGGGAGTCGAGAAGACTGTGTTACAAGGTGGTCCATCGCTAACCCAAGTGAAAGTAACCTTGAAGGAAATGATGAAAGCCTAGGAAGACTGACCAAGGGTTCCTAG

Protein sequence

MRMFGVDDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKELGDVEVVLASTNNGSLRSRLVSTNDDYREGSREDCVTRWSIANPSESNLEGNDESLGRLTKGS*
Homology
[Close]
BLAST of MELO3C026080T1 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14
Identity = 45/103 (43.69%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 7    DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
            +D+  +   FD+  + E  +IEL+     +AV+LSL+S++  ++PGT+K+KG I ++ VI
Sbjct: 1017 EDEEEDDNQFDDRATEEPALIELK-----DAVELSLNSVVGLTTPGTMKIKGTIGSKEVI 1076

Query: 67   VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
            +L+D GAT+NFL+ +LV++L LPL  T   GV+MG G + KGK
Sbjct: 1077 ILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGK 1114

[Close]
BLAST of MELO3C026080T1 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 7   DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
           D K +E+E  + ++S  E     +  EV   V+LSL+ ++  ++PGT K+KG +E+  ++
Sbjct: 316 DVKRDELEDVEMVDSTHEG----EMVEVSPMVELSLNFVVGLTAPGTFKIKGRVEDREIV 375

Query: 67  VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKEL 112
           +++DCGAT+NF++ KLVE L LP+    + GVIMG   A +G+E+
Sbjct: 376 IMVDCGATHNFISLKLVESLNLPMAAITNYGVIMGSEKAVQGREM 416

[Close]
BLAST of MELO3C026080T1 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-13
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1 

Query: 33  EVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVIVLIDCGATYNFLAQKLVEELKLPLVE 92
           E+   V+LSL S++  ++PGT K+KG +E+  V+V+IDCGAT+NF++ +LVEE+++   E
Sbjct: 349 EIGPIVELSLSSVVGLTAPGTSKIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTE 408

Query: 93  TMHPGVIMGKGSAAKGK 110
           T   GVIMG G A +GK
Sbjct: 409 TTQYGVIMGSGKAVQGK 425

[Close]
BLAST of MELO3C026080T1 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.7e-13
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1 

Query: 8   DKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVIV 67
           D+  E   FD   + E  +IEL+     + V+LSL+S++  ++PGT+K+KG I ++ VI+
Sbjct: 10  DEEEEDNQFDGRATEEPALIELK-----DVVELSLNSVVGLTTPGTMKIKGTIRSKEVII 69

Query: 68  LIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           L+D GAT+NFL+ +LV++L LPL      GV+MG G + KGK
Sbjct: 70  LVDSGATHNFLSLELVQQLALPLTTITSYGVMMGIGISMKGK 106

[Close]
BLAST of MELO3C026080T1 vs. TrEMBL
Match: A0A087HNU1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1 

Query: 6   VDDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVV 65
           V   G+E+E+ +  E  +EE I+    E+V    LSL+SM+  SSP T+K++G+I+ E V
Sbjct: 338 VQKDGSELELEEADEESDEETIQ----EIVGMATLSLNSMVGISSPRTVKIRGVIQGEPV 397

Query: 66  IVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           +VLID GAT+NF+++K+V  L+L   ET   GV+ G G   +G+
Sbjct: 398 VVLIDSGATHNFISEKIVTLLRLRTEETKGYGVVTGTGLTVQGQ 437

[Close]
BLAST of MELO3C026080T1 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-17
Identity = 52/112 (46.43%), Postives = 78/112 (69.64%), Query Frame = 1 

Query: 1   MRMFGVDDKGNEVEIFDNM-ESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGM 60
           +RMF V  + +E EI +   E RE   IEL K +V   V+LS++S++  + PGT+K++G 
Sbjct: 378 LRMFVVTAERDEYEIVEEENERRELSCIEL-KEDVTTVVELSINSVVGLNDPGTMKVRGK 437

Query: 61  IENEVVIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKEL 112
           +  E V++LIDCGAT+NF+++KLV++L LP+ ET H GVI+G G+A    EL
Sbjct: 438 LFGEEVVILIDCGATHNFVSEKLVKKLSLPIKETSHYGVILGSGAAPLTVEL 488

[Close]
BLAST of MELO3C026080T1 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 7.4e-17
Identity = 49/110 (44.55%), Postives = 78/110 (70.91%), Query Frame = 1 

Query: 1   MRMFGVDDKGNEVEIFDNMESREEEIIELQKAE-VVNAVKLSLDSMMRFSSPGTLKMKGM 60
           +RMF V +   E EI +  E  E+E+  ++  E +   V+LS++S++  + PGT+K++G 
Sbjct: 378 LRMFVVTEGREEYEIVEE-EKEEKELGRIEVNEDITTVVELSINSVVGLNDPGTMKVRGK 437

Query: 61  IENEVVIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           +  E VI+LIDCGAT+NF+++KLV++L LP+ ET H GVI+G G+A +GK
Sbjct: 438 LLGEEVIILIDCGATHNFVSEKLVKKLILPIKETSHYGVILGSGAAVQGK 486

[Close]
BLAST of MELO3C026080T1 vs. NCBI nr
Match: gi|659115474|ref|XP_008457576.1| (PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 1 

Query: 10  GNEVEIFDNMESREEEI-----IELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEV 69
           GNE E     E REEE      IE++  E +N ++LS++ ++  ++PGT+K+KG ++NE 
Sbjct: 6   GNEEEFEIIEEDREEETVDENAIEVRAVEYLN-IRLSINLVVGLTNPGTMKVKGKVKNEE 65

Query: 70  VIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKELGD-VEVVL 119
           V+VLIDCGAT+NF+ +KLV  L L L  T + GVIMG G+  KGK + + VEV+L
Sbjct: 66  VVVLIDCGATHNFIFEKLVTNLNLLLKATTNYGVIMGLGATVKGKGIYEKVEVML 119

[Close]
BLAST of MELO3C026080T1 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 45/103 (43.69%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 7    DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
            +D+  +   FD+  + E  +IEL+     +AV+LSL+S++  ++PGT+K+KG I ++ VI
Sbjct: 1017 EDEEEDDNQFDDRATEEPALIELK-----DAVELSLNSVVGLTTPGTMKIKGTIGSKEVI 1076

Query: 67   VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
            +L+D GAT+NFL+ +LV++L LPL  T   GV+MG G + KGK
Sbjct: 1077 ILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGK 1114

[Close]
BLAST of MELO3C026080T1 vs. NCBI nr
Match: gi|778660921|ref|XP_011657172.1| (PREDICTED: uncharacterized protein LOC105435812 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.7e-14
Identity = 43/103 (41.75%), Postives = 72/103 (69.90%), Query Frame = 1 

Query: 7   DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
           DD   E+   D  + +E + IELQ  ++   V+L ++S++  ++P T+K++G I+++ V+
Sbjct: 7   DDVEEEIIEEDEYDLKELKTIELQN-DLGEVVELCINSVVGLTNPSTMKIRGTIQSKEVV 66

Query: 67  VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           VL+DCGAT+NF++ +LV  LKLP  +T + GVI+G G+A KGK
Sbjct: 67  VLVDCGATHNFISDRLVMTLKLPTKDTSNYGVILGLGTAIKGK 108

The following BLAST results are available for this feature:
BLAST of MELO3C026080T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B2I6_VITVI4.1e-1443.69Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
E5GC35_CUCME3.5e-1339.05Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GC18_CUCME5.9e-1349.35Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
F6GVT4_VITVI7.7e-1343.14Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=... [more]
A0A087HNU1_ARAAL1.3e-1242.31Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1[more]
BLAST of MELO3C026080T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109397|ref|XP_008454696.1|5.7e-1746.43PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|7.4e-1744.55PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659115474|ref|XP_008457576.1|1.1e-1546.96PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo][more]
gi|147854459|emb|CAN78588.1|5.9e-1443.69hypothetical protein VITISV_043911 [Vitis vinifera][more]
gi|778660921|ref|XP_011657172.1|7.7e-1441.75PREDICTED: uncharacterized protein LOC105435812 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C026080MELO3C026080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C026080T1MELO3C026080T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026080T1.cds2MELO3C026080T1.cds2CDS
MELO3C026080T1.cds1MELO3C026080T1.cds1CDS