MELO3C026080 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026080
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified
Location	chr12 : 14794679 .. 14795261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATGTTTGGTGTAGACGACAAAGGTAATGAAGTAGAGATATTCGATAACATGGAATCGAGAGAGGAAGAGATTATAGAGTTGCAAAAGGCGGAAGTTGTAAATGCTGTGAAGCTATCGTTGGACTCAATGATGAGGTTTTCATCACCAGGAACCCTAAAAATGAAAGGGATGATTGAAAATGAAGTAGTGATAGTTCTTATCGATTGTGGAGCTACCTACAATTTCCTTGCGCAGAAATTGGTCGAGGAACTGAAGCTCCCCTTGGTAGAAACGATGCACCCTGGAGTGATAATGGGGAAGGGATCTGCAGCCAAGGGAAAAGGTATGTGTAGAGTTGTGTTGACAATAGGGGAATTGATGATTTGAGAATTTTCTTCCTCTAGAGTTGGGAGATGTGGAGGTAGTCTTGGCGAGCACTAACAATGGGAGTCTCAGAAGTAGATTGGTGAGCACTAACGATGACTATAGGGAAGGGAGTCGAGAAGACTGTGTTACAAGGTGGTCCATCGCTAACCCAAGTGAAAGTAACCTTGAAGGAAATGATGAAAGCCTAGGAAGACTGACCAAGGGTTCCTAG

mRNA sequence

ATGAGGATGTTTGGTGTAGACGACAAAGGTAATGAAGTAGAGATATTCGATAACATGGAATCGAGAGAGGAAGAGATTATAGAGTTGCAAAAGGCGGAAGTTGTAAATGCTGTGAAGCTATCGTTGGACTCAATGATGAGGTTTTCATCACCAGGAACCCTAAAAATGAAAGGGATGATTGAAAATGAAGTAGTGATAGTTCTTATCGATTGTGGAGCTACCTACAATTTCCTTGCGCAGAAATTGGTCGAGGAACTGAAGCTCCCCTTGGTAGAAACGATGCACCCTGGAGTGATAATGGGGAAGGGATCTGCAGCCAAGGGAAAAGAGTTGGGAGATGTGGAGGTAGTCTTGGCGAGCACTAACAATGGGAGTCTCAGAAGTAGATTGGTGAGCACTAACGATGACTATAGGGAAGGGAGTCGAGAAGACTGTGTTACAAGGTGGTCCATCGCTAACCCAAGTGAAAGTAACCTTGAAGGAAATGATGAAAGCCTAGGAAGACTGACCAAGGGTTCCTAG

Coding sequence (CDS)

ATGAGGATGTTTGGTGTAGACGACAAAGGTAATGAAGTAGAGATATTCGATAACATGGAATCGAGAGAGGAAGAGATTATAGAGTTGCAAAAGGCGGAAGTTGTAAATGCTGTGAAGCTATCGTTGGACTCAATGATGAGGTTTTCATCACCAGGAACCCTAAAAATGAAAGGGATGATTGAAAATGAAGTAGTGATAGTTCTTATCGATTGTGGAGCTACCTACAATTTCCTTGCGCAGAAATTGGTCGAGGAACTGAAGCTCCCCTTGGTAGAAACGATGCACCCTGGAGTGATAATGGGGAAGGGATCTGCAGCCAAGGGAAAAGAGTTGGGAGATGTGGAGGTAGTCTTGGCGAGCACTAACAATGGGAGTCTCAGAAGTAGATTGGTGAGCACTAACGATGACTATAGGGAAGGGAGTCGAGAAGACTGTGTTACAAGGTGGTCCATCGCTAACCCAAGTGAAAGTAACCTTGAAGGAAATGATGAAAGCCTAGGAAGACTGACCAAGGGTTCCTAG

Protein sequence

MRMFGVDDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKELGDVEVVLASTNNGSLRSRLVSTNDDYREGSREDCVTRWSIANPSESNLEGNDESLGRLTKGS*

Homology

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BLAST of MELO3C026080 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14
Identity = 45/103 (43.69%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 7    DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
            +D+  +   FD+  + E  +IEL+     +AV+LSL+S++  ++PGT+K+KG I ++ VI
Sbjct: 1017 EDEEEDDNQFDDRATEEPALIELK-----DAVELSLNSVVGLTTPGTMKIKGTIGSKEVI 1076

Query: 67   VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
            +L+D GAT+NFL+ +LV++L LPL  T   GV+MG G + KGK
Sbjct: 1077 ILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGK 1114

[Close]

BLAST of MELO3C026080 vs. TrEMBL
Match: E5GC35_CUCME (Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 41/105 (39.05%), Postives = 69/105 (65.71%), Query Frame = 1


Query: 7   DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
           D K +E+E  + ++S  E     +  EV   V+LSL+ ++  ++PGT K+KG +E+  ++
Sbjct: 316 DVKRDELEDVEMVDSTHEG----EMVEVSPMVELSLNFVVGLTAPGTFKIKGRVEDREIV 375

Query: 67  VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKEL 112
           +++DCGAT+NF++ KLVE L LP+    + GVIMG   A +G+E+
Sbjct: 376 IMVDCGATHNFISLKLVESLNLPMAAITNYGVIMGSEKAVQGREM 416

[Close]

BLAST of MELO3C026080 vs. TrEMBL
Match: E5GC18_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-13
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 33  EVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVIVLIDCGATYNFLAQKLVEELKLPLVE 92
           E+   V+LSL S++  ++PGT K+KG +E+  V+V+IDCGAT+NF++ +LVEE+++   E
Sbjct: 349 EIGPIVELSLSSVVGLTAPGTSKIKGKVEDREVVVMIDCGATHNFISLRLVEEMQIATTE 408

Query: 93  TMHPGVIMGKGSAAKGK 110
           T   GVIMG G A +GK
Sbjct: 409 TTQYGVIMGSGKAVQGK 425

[Close]

BLAST of MELO3C026080 vs. TrEMBL
Match: F6GVT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.7e-13
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1


Query: 8   DKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVIV 67
           D+  E   FD   + E  +IEL+     + V+LSL+S++  ++PGT+K+KG I ++ VI+
Sbjct: 10  DEEEEDNQFDGRATEEPALIELK-----DVVELSLNSVVGLTTPGTMKIKGTIRSKEVII 69

Query: 68  LIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           L+D GAT+NFL+ +LV++L LPL      GV+MG G + KGK
Sbjct: 70  LVDSGATHNFLSLELVQQLALPLTTITSYGVMMGIGISMKGK 106

[Close]

BLAST of MELO3C026080 vs. TrEMBL
Match: A0A087HNU1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-12
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 6   VDDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVV 65
           V   G+E+E+ +  E  +EE I+    E+V    LSL+SM+  SSP T+K++G+I+ E V
Sbjct: 338 VQKDGSELELEEADEESDEETIQ----EIVGMATLSLNSMVGISSPRTVKIRGVIQGEPV 397

Query: 66  IVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           +VLID GAT+NF+++K+V  L+L   ET   GV+ G G   +G+
Sbjct: 398 VVLIDSGATHNFISEKIVTLLRLRTEETKGYGVVTGTGLTVQGQ 437

[Close]

BLAST of MELO3C026080 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-17
Identity = 52/112 (46.43%), Postives = 78/112 (69.64%), Query Frame = 1


Query: 1   MRMFGVDDKGNEVEIFDNM-ESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGM 60
           +RMF V  + +E EI +   E RE   IEL K +V   V+LS++S++  + PGT+K++G 
Sbjct: 378 LRMFVVTAERDEYEIVEEENERRELSCIEL-KEDVTTVVELSINSVVGLNDPGTMKVRGK 437

Query: 61  IENEVVIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKEL 112
           +  E V++LIDCGAT+NF+++KLV++L LP+ ET H GVI+G G+A    EL
Sbjct: 438 LFGEEVVILIDCGATHNFVSEKLVKKLSLPIKETSHYGVILGSGAAPLTVEL 488

[Close]

BLAST of MELO3C026080 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 7.4e-17
Identity = 49/110 (44.55%), Postives = 78/110 (70.91%), Query Frame = 1


Query: 1   MRMFGVDDKGNEVEIFDNMESREEEIIELQKAE-VVNAVKLSLDSMMRFSSPGTLKMKGM 60
           +RMF V +   E EI +  E  E+E+  ++  E +   V+LS++S++  + PGT+K++G 
Sbjct: 378 LRMFVVTEGREEYEIVEE-EKEEKELGRIEVNEDITTVVELSINSVVGLNDPGTMKVRGK 437

Query: 61  IENEVVIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           +  E VI+LIDCGAT+NF+++KLV++L LP+ ET H GVI+G G+A +GK
Sbjct: 438 LLGEEVIILIDCGATHNFVSEKLVKKLILPIKETSHYGVILGSGAAVQGK 486

[Close]

BLAST of MELO3C026080 vs. NCBI nr
Match: gi|659115474|ref|XP_008457576.1| (PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 54/115 (46.96%), Postives = 78/115 (67.83%), Query Frame = 1


Query: 10  GNEVEIFDNMESREEEI-----IELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEV 69
           GNE E     E REEE      IE++  E +N ++LS++ ++  ++PGT+K+KG ++NE 
Sbjct: 6   GNEEEFEIIEEDREEETVDENAIEVRAVEYLN-IRLSINLVVGLTNPGTMKVKGKVKNEE 65

Query: 70  VIVLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGKELGD-VEVVL 119
           V+VLIDCGAT+NF+ +KLV  L L L  T + GVIMG G+  KGK + + VEV+L
Sbjct: 66  VVVLIDCGATHNFIFEKLVTNLNLLLKATTNYGVIMGLGATVKGKGIYEKVEVML 119

[Close]

BLAST of MELO3C026080 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 5.9e-14
Identity = 45/103 (43.69%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 7    DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
            +D+  +   FD+  + E  +IEL+     +AV+LSL+S++  ++PGT+K+KG I ++ VI
Sbjct: 1017 EDEEEDDNQFDDRATEEPALIELK-----DAVELSLNSVVGLTTPGTMKIKGTIGSKEVI 1076

Query: 67   VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
            +L+D GAT+NFL+ +LV++L LPL  T   GV+MG G + KGK
Sbjct: 1077 ILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGTGISVKGK 1114

[Close]

BLAST of MELO3C026080 vs. NCBI nr
Match: gi|778660921|ref|XP_011657172.1| (PREDICTED: uncharacterized protein LOC105435812 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 7.7e-14
Identity = 43/103 (41.75%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 7   DDKGNEVEIFDNMESREEEIIELQKAEVVNAVKLSLDSMMRFSSPGTLKMKGMIENEVVI 66
           DD   E+   D  + +E + IELQ  ++   V+L ++S++  ++P T+K++G I+++ V+
Sbjct: 7   DDVEEEIIEEDEYDLKELKTIELQN-DLGEVVELCINSVVGLTNPSTMKIRGTIQSKEVV 66

Query: 67  VLIDCGATYNFLAQKLVEELKLPLVETMHPGVIMGKGSAAKGK 110
           VL+DCGAT+NF++ +LV  LKLP  +T + GVI+G G+A KGK
Sbjct: 67  VLVDCGATHNFISDRLVMTLKLPTKDTSNYGVILGLGTAIKGK 108

The following BLAST results are available for this feature:

BLAST of MELO3C026080 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B2I6_VITVI	4.1e-14	43.69	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]
E5GC35_CUCME	3.5e-13	39.05	Gypsy/ty3 element polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GC18_CUCME	5.9e-13	49.35	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
F6GVT4_VITVI	7.7e-13	43.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00660 PE=4 SV=...	[more]
A0A087HNU1_ARAAL	1.3e-12	42.31	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1	[more]

BLAST of MELO3C026080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109397\|ref\|XP_008454696.1\|	5.7e-17	46.43	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	7.4e-17	44.55	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|659115474\|ref\|XP_008457576.1\|	1.1e-15	46.96	PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo]	[more]
gi\|147854459\|emb\|CAN78588.1\|	5.9e-14	43.69	hypothetical protein VITISV_043911 [Vitis vinifera]	[more]
gi\|778660921\|ref\|XP_011657172.1\|	7.7e-14	41.75	PREDICTED: uncharacterized protein LOC105435812 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0007264	small GTPase mediated signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding
molecular_function	GO:0005525	GTP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47413	melon EST collection version 4.0	transcribed_cluster
MU57827	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026080T1	MELO3C026080T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47413	MU47413	transcribed_cluster
MU57827	MU57827	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026080	Silver-seed gourd	carmeB0047
MELO3C026080	Silver-seed gourd	carmeB0050
MELO3C026080	Cucumber (Chinese Long) v3	cucmeB016
MELO3C026080	Cucumber (Chinese Long) v3	cucmeB029
MELO3C026080	Watermelon (97103) v2	mewmbB138
MELO3C026080	Watermelon (97103) v2	mewmbB139
MELO3C026080	Watermelon (97103) v2	mewmbB145
MELO3C026080	Wax gourd	mewgoB172
MELO3C026080	Cucumber (Gy14) v1	cgymeB018
MELO3C026080	Cucumber (Gy14) v1	cgymeB527
MELO3C026080	Cucumber (Gy14) v1	cgymeB528
MELO3C026080	Cucurbita maxima (Rimu)	cmameB203
MELO3C026080	Cucurbita maxima (Rimu)	cmameB361
MELO3C026080	Cucurbita maxima (Rimu)	cmameB367
MELO3C026080	Cucurbita maxima (Rimu)	cmameB369
MELO3C026080	Cucurbita moschata (Rifu)	cmomeB189
MELO3C026080	Cucurbita moschata (Rifu)	cmomeB358
MELO3C026080	Wild cucumber (PI 183967)	cpimeB017
MELO3C026080	Wild cucumber (PI 183967)	cpimeB451
MELO3C026080	Cucumber (Chinese Long) v2	cumeB004
MELO3C026080	Watermelon (Charleston Gray)	mewcgB136
MELO3C026080	Watermelon (Charleston Gray)	mewcgB137
MELO3C026080	Watermelon (Charleston Gray)	mewcgB143
MELO3C026080	Watermelon (97103) v1	mewmB160
MELO3C026080	Watermelon (97103) v1	mewmB164
MELO3C026080	Watermelon (97103) v1	mewmB165
MELO3C026080	Cucurbita pepo (Zucchini)	cpemeB032
MELO3C026080	Cucurbita pepo (Zucchini)	cpemeB474
MELO3C026080	Bottle gourd (USVL1VR-Ls)	lsimeB129
MELO3C026080	Bottle gourd (USVL1VR-Ls)	lsimeB176
MELO3C026080	Bottle gourd (USVL1VR-Ls)	lsimeB184
MELO3C026080	Cucumber (Gy14) v2	cgybmeB016
MELO3C026080	Cucumber (Gy14) v2	cgybmeB396