MELO3C026059T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026059T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative reverse transcriptase
Location	chr12 : 15177264 .. 15177693 (-)
Sequence length	430

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTTGGGTTTGTATGCAAATCTTGGGAAAATCTCTATTTTTGTTGCGGGGAGTACTAATGAGGTTGCTTCTCGTCTGGCTGCTAATATGGGTTTTATCCTTGGAAACCTACCTGTTCGATATCTTAGTCTTCCTTTACTTACTGGTAGGTTACGTCCTAGTGATTGTGCTCCTCTTATTCAACGTATTACTAGCCGGATTCGTTCTTGGAATGCTAGAGTTCTATCTTTTGCTGGTAGATTTCAGCTTGTTCGTTCTGTGTTTCGCAGTCTTCAAGTTTACTGGGCTAGTGTTTTTGTTCTTCCTTCGTGTGTGCATAACAAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGAAAGGTAGAGGGGGTGTAAAGGTGGCGTAG

mRNA sequence

TTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTTGGGTTTGTATGCAAATCTTGGGAAAATCTCTATTTTTGTTGCGGGGAGTACTAATGAGGTTGCTTCTCGTCTGGCTGCTAATATGGGTTTTATCCTTGGAAACCTACCTGTTCGATATCTTAGTCTTCCTTTACTTACTGGTAGGTTACGTCCTAGTGATTGTGCTCCTCTTATTCAACGTATTACTAGCCGGATTCGTTCTTGGAATGCTAGAGTTCTATCTTTTGCTGGTAGATTTCAGCTTGTTCGTTCTGTGTTTCGCAGTCTTCAAGTTTACTGGGCTAGTGTTTTTGTTCTTCCTTCGTGTGTGCATAACAAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGAAAGGTAGAGGGGGTGTAAAGGTGGCGTAG

Coding sequence (CDS)

TTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTTGGGTTTGTATGCAAATCTTGGGAAAATCTCTATTTTTGTTGCGGGGAGTACTAATGAGGTTGCTTCTCGTCTGGCTGCTAATATGGGTTTTATCCTTGGAAACCTACCTGTTCGATATCTTAGTCTTCCTTTACTTACTGGTAGGTTACGTCCTAGTGATTGTGCTCCTCTTATTCAACGTATTACTAGCCGGATTCGTTCTTGGAATGCTAGAGTTCTATCTTTTGCTGGTAGATTTCAGCTTGTTCGTTCTGTGTTTCGCAGTCTTCAAGTTTACTGGGCTAGTGTTTTTGTTCTTCCTTCGTGTGTGCATAACAAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGAAAGGTAGAGGGGGTGTAAAGGTGGCGTAG

Protein sequence

FVRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVKVA*

Homology

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BLAST of MELO3C026059T1 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-09
Identity = 25/75 (33.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 55  LPLLTGRLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPS 114
           +P+L  R+       +++R++SR+  W  + LSFAGR  L ++V  S+ V+  S  +LP 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 115 CVHNKVDKILRSYLW 130
            + N++D++ R++LW
Sbjct: 61  SILNRLDQLSRTFLW 75

[Close]

BLAST of MELO3C026059T1 vs. TrEMBL
Match: A0A0V0IYZ4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 1


Query: 4   ETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLR 63
           E  Q+F ++ GL AN  K  ++  G + +    +  + GF  GNLP RYL +PL + +L 
Sbjct: 356 ECFQQFSQVSGLIANQAKSCVYFGGVSKQEQQLILQHTGFTKGNLPFRYLGVPLSSKKLS 415

Query: 64  PSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKI 123
            S C PL+ R+   I +W  + LS+AGR QLV+SV  S+Q +WA +F+LP  V  +V+ I
Sbjct: 416 ISQCQPLLDRMLGIINTWTVKFLSYAGRLQLVQSVLTSIQAFWAQIFLLPKKVFQQVEAI 475

Query: 124 LRSYLWRGKEKGRGGVKVA 143
            + +LW G  + +G   VA
Sbjct: 476 CKRFLWNGDTQTKGKALVA 494

[Close]

BLAST of MELO3C026059T1 vs. TrEMBL
Match: Q9ZUF0_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-22
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1


Query: 7    QKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSD 66
            +KF  +  L  +L K +IF+AG +    + +     F LG LPV+YL LPLLT R+  SD
Sbjct: 873  EKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSD 932

Query: 67   CAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRS 126
              PL+++I +RI SW  R LSFAGR QL++SV  S+  +W SVF LP     +++K+  +
Sbjct: 933  YLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSA 992

Query: 127  YLWRGKEKGRGGVKVA 143
            +LW G +      K+A
Sbjct: 993  FLWSGPDLNTKKAKIA 1008

[Close]

BLAST of MELO3C026059T1 vs. TrEMBL
Match: O64612_ARATH (Putative reverse transcriptase OS=Arabidopsis thaliana GN=At2g18820 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1


Query: 9    FGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCA 68
            F    GL  +L K ++F+A  ++E  + + A   F  G+LPVRYL LPL+T R+  +DC 
Sbjct: 983  FAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCL 1042

Query: 69   PLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYL 128
            PL+++I SRI SW  R LS+AGR QL+ SV  SL  +W S F LP     ++++I  ++L
Sbjct: 1043 PLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFL 1102

Query: 129  WRGKEKGRGGVKVA 143
            W G +      KVA
Sbjct: 1103 WSGTDLNPHKAKVA 1116

[Close]

BLAST of MELO3C026059T1 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 7   QKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSD 66
           QKF    GL A+  K +I+  G  +E A  LA  +   LG LP RYL +PL + +L  + 
Sbjct: 711 QKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQ 770

Query: 67  CAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRS 126
           C PL++ IT+R ++W A++LS+AGR QL++S+  S+Q YWA +F L   V   V+K+ R 
Sbjct: 771 CKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRK 830

Query: 127 YLWRGK 133
           +LW GK
Sbjct: 831 FLWTGK 836

[Close]

BLAST of MELO3C026059T1 vs. TrEMBL
Match: Q9FYJ4_ARATH (F17F8.5 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 1


Query: 2   VRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGR 61
           + E   +F +  GL  +L K ++++AG +  +   +AA   F +G LPVRYL LPL+T R
Sbjct: 368 ILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKR 427

Query: 62  LRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVD 121
           L  +D +PL+++I  RI +W  R  SFAGRF L++SV  S+  +W + F LP     ++D
Sbjct: 428 LTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREID 487

Query: 122 KILRSYLWRGKEKGRGGVKVA 143
           K+  S+LW G E      K++
Sbjct: 488 KLCSSFLWSGSEMSSHKAKIS 508

[Close]

BLAST of MELO3C026059T1 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 53/117 (45.30%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 26  VAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRSWNARV 85
           +AG  +   + +  +  F  G LPVRYL LPLLT ++  SD  PL+++I  RI  W AR 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 86  LSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVKVA 143
           LSFAGR QL+ SV  SL  +W S F LPS    ++D I  S+LW G E      KVA
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVA 117

[Close]

BLAST of MELO3C026059T1 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-54
Identity = 112/142 (78.87%), Postives = 122/142 (85.92%), Query Frame = 1


Query: 1   FVRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTG 60
           F+R+ LQKFGEL GL+AN  K SIFVAG  NE AS LAA MGF+ GNL VRYL LPLLTG
Sbjct: 138 FIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVRYLGLPLLTG 197

Query: 61  RLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKV 120
           RL  +DCAPLIQRITS+IRSW ARVLSFAGR QLV SV RSLQVYWASVFVLP+ VHN+V
Sbjct: 198 RLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEV 257

Query: 121 DKILRSYLWRGKEKGRGGVKVA 143
           DKILRSYLWRGKE+GRGG+KVA
Sbjct: 258 DKILRSYLWRGKEEGRGGIKVA 279

[Close]

BLAST of MELO3C026059T1 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 111/142 (78.17%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   FVRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTG 60
           F+RE LQKFGEL GL+AN  K SIFVAG  NE AS LA  MGF+ GNL VRYL LPLL G
Sbjct: 82  FIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAG 141

Query: 61  RLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKV 120
           RLR +D APLIQRITSRIRSW ARVLSFAGR QLV SV RS QVYWASVFVLP+ VHN+V
Sbjct: 142 RLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEV 201

Query: 121 DKILRSYLWRGKEKGRGGVKVA 143
           DKILRSYLWRGKE+GRGG+KVA
Sbjct: 202 DKILRSYLWRGKEEGRGGIKVA 223

[Close]

BLAST of MELO3C026059T1 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 98/122 (80.33%), Postives = 106/122 (86.89%), Query Frame = 1


Query: 21   KISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRS 80
            K SIFVAG ++E AS LAA+MGF LGNLPVRYL LPLLTGRLR +DCAPLIQRITS IRS
Sbjct: 904  KSSIFVAGVSHEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 963

Query: 81   WNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVK 140
            W ARVLSF G  QLVRSV  SLQVYWAS+FVLP+ VHN+VDKILRSYLWRGKE+GRGG K
Sbjct: 964  WTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK 1023

Query: 141  VA 143
            VA
Sbjct: 1024 VA 1025

[Close]

BLAST of MELO3C026059T1 vs. NCBI nr
Match: gi|778730244|ref|XP_011659736.1| (PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = 1


Query: 34  ASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQ 93
           AS+LAANMGF +G LPV YL LPLL GRLR SDC PLI+RIT+RIRSW+AR  SF GR Q
Sbjct: 43  ASQLAANMGFTIGYLPVCYLGLPLLLGRLRSSDCDPLIRRITNRIRSWSARQ-SFVGRLQ 102

Query: 94  LVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVKVA 143
           LVRSV RSLQVYWASVF+LP  VH  VDKILR+YLWRGKE+GRGG KVA
Sbjct: 103 LVRSVLRSLQVYWASVFMLPMKVHRDVDKILRAYLWRGKEEGRGGAKVA 150

[Close]

BLAST of MELO3C026059T1 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 6.9e-37
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 1


Query: 7   QKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSD 66
           ++FGEL GL+AN  K SIF+AG  NE ASRLAA MGF+ GNLPVRYL LPLLTGRLR +D
Sbjct: 537 KRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSND 596

Query: 67  CAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNK 120
           C PLIQRITSRIRS +ARVLSFAGR QLV SV  SLQVYWA VFVLP+ VHN+
Sbjct: 597 CVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNE 649

The following BLAST results are available for this feature:

BLAST of MELO3C026059T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNHX1_ARATH	6.1e-09	33.33	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P...	[more]

BLAST of MELO3C026059T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0V0IYZ4_SOLCH	1.2e-22	38.85	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
Q9ZUF0_ARATH	5.7e-22	41.18	Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A...	[more]
O64612_ARATH	1.3e-21	41.79	Putative reverse transcriptase OS=Arabidopsis thaliana GN=At2g18820 PE=4 SV=1	[more]
F4NCG1_BETVU	1.7e-21	42.86	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1	[more]
Q9FYJ4_ARATH	1.1e-20	38.30	F17F8.5 OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of MELO3C026059T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24255.1	1.5e-21	45.30	RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]

BLAST of MELO3C026059T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126450\|ref\|XP_008463188.1\|	4.8e-54	78.87	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659121154\|ref\|XP_008460525.1\|	2.4e-53	78.17	PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum...	[more]
gi\|659114595\|ref\|XP_008457134.1\|	3.7e-46	80.33	PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]	[more]
gi\|778730244\|ref\|XP_011659736.1\|	1.4e-37	77.06	PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus]	[more]
gi\|659102432\|ref\|XP_008452126.1\|	6.9e-37	75.22	PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026059	MELO3C026059	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026059T1.cds1	MELO3C026059T1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026059T1	MELO3C026059T1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 2..90 score: 3.5
None	No IPR available	PANTHER	PTHR19446:SF368	SUBFAMILY NOT NAMED	coord: 2..90 score: 3.5