MELO3C026059 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026059
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative reverse transcriptase
Locationchr12 : 15177264 .. 15177693 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTTGGGTTTGTATGCAAATCTTGGGAAAATCTCTATTTTTGTTGCGGGGAGTACTAATGAGGTTGCTTCTCGTCTGGCTGCTAATATGGGTTTTATCCTTGGAAACCTACCTGTTCGATATCTTAGTCTTCCTTTACTTACTGGTAGGTTACGTCCTAGTGATTGTGCTCCTCTTATTCAACGTATTACTAGCCGGATTCGTTCTTGGAATGCTAGAGTTCTATCTTTTGCTGGTAGATTTCAGCTTGTTCGTTCTGTGTTTCGCAGTCTTCAAGTTTACTGGGCTAGTGTTTTTGTTCTTCCTTCGTGTGTGCATAACAAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGAAAGGTAGAGGGGGTGTAAAGGTGGCGTAG

mRNA sequence

TTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTTGGGTTTGTATGCAAATCTTGGGAAAATCTCTATTTTTGTTGCGGGGAGTACTAATGAGGTTGCTTCTCGTCTGGCTGCTAATATGGGTTTTATCCTTGGAAACCTACCTGTTCGATATCTTAGTCTTCCTTTACTTACTGGTAGGTTACGTCCTAGTGATTGTGCTCCTCTTATTCAACGTATTACTAGCCGGATTCGTTCTTGGAATGCTAGAGTTCTATCTTTTGCTGGTAGATTTCAGCTTGTTCGTTCTGTGTTTCGCAGTCTTCAAGTTTACTGGGCTAGTGTTTTTGTTCTTCCTTCGTGTGTGCATAACAAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGAAAGGTAGAGGGGGTGTAAAGGTGGCGTAG

Coding sequence (CDS)

TTTTGTTCGGGAGACTCTTCAGAAGTTTGGTGAGCTTTTGGGTTTGTATGCAAATCTTGGGAAAATCTCTATTTTTGTTGCGGGGAGTACTAATGAGGTTGCTTCTCGTCTGGCTGCTAATATGGGTTTTATCCTTGGAAACCTACCTGTTCGATATCTTAGTCTTCCTTTACTTACTGGTAGGTTACGTCCTAGTGATTGTGCTCCTCTTATTCAACGTATTACTAGCCGGATTCGTTCTTGGAATGCTAGAGTTCTATCTTTTGCTGGTAGATTTCAGCTTGTTCGTTCTGTGTTTCGCAGTCTTCAAGTTTACTGGGCTAGTGTTTTTGTTCTTCCTTCGTGTGTGCATAACAAGGTGGACAAGATACTGAGGTCTTATCTTTGGAGGGGTAAGGAGAAAGGTAGAGGGGGTGTAAAGGTGGCGTAG

Protein sequence

FVRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVKVA*
Homology
[Close]
BLAST of MELO3C026059 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-09
Identity = 25/75 (33.33%), Postives = 45/75 (60.00%), Query Frame = 1 

Query: 55  LPLLTGRLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPS 114
           +P+L  R+       +++R++SR+  W  + LSFAGR  L ++V  S+ V+  S  +LP 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 115 CVHNKVDKILRSYLW 130
            + N++D++ R++LW
Sbjct: 61  SILNRLDQLSRTFLW 75

[Close]
BLAST of MELO3C026059 vs. TrEMBL
Match: A0A0V0IYZ4_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-22
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 1 

Query: 4   ETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLR 63
           E  Q+F ++ GL AN  K  ++  G + +    +  + GF  GNLP RYL +PL + +L 
Sbjct: 356 ECFQQFSQVSGLIANQAKSCVYFGGVSKQEQQLILQHTGFTKGNLPFRYLGVPLSSKKLS 415

Query: 64  PSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKI 123
            S C PL+ R+   I +W  + LS+AGR QLV+SV  S+Q +WA +F+LP  V  +V+ I
Sbjct: 416 ISQCQPLLDRMLGIINTWTVKFLSYAGRLQLVQSVLTSIQAFWAQIFLLPKKVFQQVEAI 475

Query: 124 LRSYLWRGKEKGRGGVKVA 143
            + +LW G  + +G   VA
Sbjct: 476 CKRFLWNGDTQTKGKALVA 494

[Close]
BLAST of MELO3C026059 vs. TrEMBL
Match: Q9ZUF0_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05980 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-22
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1 

Query: 7    QKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSD 66
            +KF  +  L  +L K +IF+AG +    + +     F LG LPV+YL LPLLT R+  SD
Sbjct: 873  EKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSD 932

Query: 67   CAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRS 126
              PL+++I +RI SW  R LSFAGR QL++SV  S+  +W SVF LP     +++K+  +
Sbjct: 933  YLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSA 992

Query: 127  YLWRGKEKGRGGVKVA 143
            +LW G +      K+A
Sbjct: 993  FLWSGPDLNTKKAKIA 1008

[Close]
BLAST of MELO3C026059 vs. TrEMBL
Match: O64612_ARATH (Putative reverse transcriptase OS=Arabidopsis thaliana GN=At2g18820 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1 

Query: 9    FGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCA 68
            F    GL  +L K ++F+A  ++E  + + A   F  G+LPVRYL LPL+T R+  +DC 
Sbjct: 983  FAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCL 1042

Query: 69   PLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYL 128
            PL+++I SRI SW  R LS+AGR QL+ SV  SL  +W S F LP     ++++I  ++L
Sbjct: 1043 PLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFL 1102

Query: 129  WRGKEKGRGGVKVA 143
            W G +      KVA
Sbjct: 1103 WSGTDLNPHKAKVA 1116

[Close]
BLAST of MELO3C026059 vs. TrEMBL
Match: F4NCG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1 

Query: 7   QKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSD 66
           QKF    GL A+  K +I+  G  +E A  LA  +   LG LP RYL +PL + +L  + 
Sbjct: 711 QKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQ 770

Query: 67  CAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRS 126
           C PL++ IT+R ++W A++LS+AGR QL++S+  S+Q YWA +F L   V   V+K+ R 
Sbjct: 771 CKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRK 830

Query: 127 YLWRGK 133
           +LW GK
Sbjct: 831 FLWTGK 836

[Close]
BLAST of MELO3C026059 vs. TrEMBL
Match: Q9FYJ4_ARATH (F17F8.5 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 54/141 (38.30%), Postives = 84/141 (59.57%), Query Frame = 1 

Query: 2   VRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGR 61
           + E   +F +  GL  +L K ++++AG +  +   +AA   F +G LPVRYL LPL+T R
Sbjct: 368 ILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKR 427

Query: 62  LRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVD 121
           L  +D +PL+++I  RI +W  R  SFAGRF L++SV  S+  +W + F LP     ++D
Sbjct: 428 LTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREID 487

Query: 122 KILRSYLWRGKEKGRGGVKVA 143
           K+  S+LW G E      K++
Sbjct: 488 KLCSSFLWSGSEMSSHKAKIS 508

[Close]
BLAST of MELO3C026059 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21
Identity = 53/117 (45.30%), Postives = 66/117 (56.41%), Query Frame = 1 

Query: 26  VAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRSWNARV 85
           +AG  +   + +  +  F  G LPVRYL LPLLT ++  SD  PL+++I  RI  W AR 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 86  LSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVKVA 143
           LSFAGR QL+ SV  SL  +W S F LPS    ++D I  S+LW G E      KVA
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVA 117

[Close]
BLAST of MELO3C026059 vs. NCBI nr
Match: gi|659126450|ref|XP_008463188.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-54
Identity = 112/142 (78.87%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 1   FVRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTG 60
           F+R+ LQKFGEL GL+AN  K SIFVAG  NE AS LAA MGF+ GNL VRYL LPLLTG
Sbjct: 138 FIRDCLQKFGELSGLFANPRKSSIFVAGVNNENASHLAACMGFVRGNLSVRYLGLPLLTG 197

Query: 61  RLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKV 120
           RL  +DCAPLIQRITS+IRSW ARVLSFAGR QLV SV RSLQVYWASVFVLP+ VHN+V
Sbjct: 198 RLCSNDCAPLIQRITSQIRSWTARVLSFAGRMQLVCSVLRSLQVYWASVFVLPAYVHNEV 257

Query: 121 DKILRSYLWRGKEKGRGGVKVA 143
           DKILRSYLWRGKE+GRGG+KVA
Sbjct: 258 DKILRSYLWRGKEEGRGGIKVA 279

[Close]
BLAST of MELO3C026059 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 111/142 (78.17%), Postives = 119/142 (83.80%), Query Frame = 1 

Query: 1   FVRETLQKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTG 60
           F+RE LQKFGEL GL+AN  K SIFVAG  NE AS LA  MGF+ GNL VRYL LPLL G
Sbjct: 82  FIRECLQKFGELSGLFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAG 141

Query: 61  RLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKV 120
           RLR +D APLIQRITSRIRSW ARVLSFAGR QLV SV RS QVYWASVFVLP+ VHN+V
Sbjct: 142 RLRSNDYAPLIQRITSRIRSWTARVLSFAGRLQLVHSVLRSFQVYWASVFVLPAYVHNEV 201

Query: 121 DKILRSYLWRGKEKGRGGVKVA 143
           DKILRSYLWRGKE+GRGG+KVA
Sbjct: 202 DKILRSYLWRGKEEGRGGIKVA 223

[Close]
BLAST of MELO3C026059 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46
Identity = 98/122 (80.33%), Postives = 106/122 (86.89%), Query Frame = 1 

Query: 21   KISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRS 80
            K SIFVAG ++E AS LAA+MGF LGNLPVRYL LPLLTGRLR +DCAPLIQRITS IRS
Sbjct: 904  KSSIFVAGVSHEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRS 963

Query: 81   WNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVK 140
            W ARVLSF G  QLVRSV  SLQVYWAS+FVLP+ VHN+VDKILRSYLWRGKE+GRGG K
Sbjct: 964  WTARVLSFFGTLQLVRSVLHSLQVYWASMFVLPAYVHNEVDKILRSYLWRGKEEGRGGFK 1023

Query: 141  VA 143
            VA
Sbjct: 1024 VA 1025

[Close]
BLAST of MELO3C026059 vs. NCBI nr
Match: gi|778730244|ref|XP_011659736.1| (PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 84/109 (77.06%), Postives = 92/109 (84.40%), Query Frame = 1 

Query: 34  ASRLAANMGFILGNLPVRYLSLPLLTGRLRPSDCAPLIQRITSRIRSWNARVLSFAGRFQ 93
           AS+LAANMGF +G LPV YL LPLL GRLR SDC PLI+RIT+RIRSW+AR  SF GR Q
Sbjct: 43  ASQLAANMGFTIGYLPVCYLGLPLLLGRLRSSDCDPLIRRITNRIRSWSARQ-SFVGRLQ 102

Query: 94  LVRSVFRSLQVYWASVFVLPSCVHNKVDKILRSYLWRGKEKGRGGVKVA 143
           LVRSV RSLQVYWASVF+LP  VH  VDKILR+YLWRGKE+GRGG KVA
Sbjct: 103 LVRSVLRSLQVYWASVFMLPMKVHRDVDKILRAYLWRGKEEGRGGAKVA 150

[Close]
BLAST of MELO3C026059 vs. NCBI nr
Match: gi|659102432|ref|XP_008452126.1| (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 6.9e-37
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 1 

Query: 7   QKFGELLGLYANLGKISIFVAGSTNEVASRLAANMGFILGNLPVRYLSLPLLTGRLRPSD 66
           ++FGEL GL+AN  K SIF+AG  NE ASRLAA MGF+ GNLPVRYL LPLLTGRLR +D
Sbjct: 537 KRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNLPVRYLGLPLLTGRLRSND 596

Query: 67  CAPLIQRITSRIRSWNARVLSFAGRFQLVRSVFRSLQVYWASVFVLPSCVHNK 120
           C PLIQRITSRIRS +ARVLSFAGR QLV SV  SLQVYWA VFVLP+ VHN+
Sbjct: 597 CVPLIQRITSRIRSRSARVLSFAGRLQLVCSVLCSLQVYWAIVFVLPAYVHNE 649

The following BLAST results are available for this feature:
BLAST of MELO3C026059 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH6.1e-0933.33Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
BLAST of MELO3C026059 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0V0IYZ4_SOLCH1.2e-2238.85Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
Q9ZUF0_ARATH5.7e-2241.18Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A... [more]
O64612_ARATH1.3e-2141.79Putative reverse transcriptase OS=Arabidopsis thaliana GN=At2g18820 PE=4 SV=1[more]
F4NCG1_BETVU1.7e-2142.86Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
Q9FYJ4_ARATH1.1e-2038.30F17F8.5 OS=Arabidopsis thaliana PE=4 SV=1[more]
BLAST of MELO3C026059 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24255.11.5e-2145.30 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
BLAST of MELO3C026059 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126450|ref|XP_008463188.1|4.8e-5478.87PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659121154|ref|XP_008460525.1|2.4e-5378.17PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum... [more]
gi|659114595|ref|XP_008457134.1|3.7e-4680.33PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|778730244|ref|XP_011659736.1|1.4e-3777.06PREDICTED: uncharacterized protein LOC105436250 [Cucumis sativus][more]
gi|659102432|ref|XP_008452126.1|6.9e-3775.22PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026059T1MELO3C026059T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 2..90
score: 3.5
NoneNo IPR availablePANTHERPTHR19446:SF368SUBFAMILY NOT NAMEDcoord: 2..90
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026059Cucumber (Gy14) v2cgybmeB396
MELO3C026059Cucumber (Chinese Long) v3cucmeB029
MELO3C026059Watermelon (97103) v2mewmbB139
MELO3C026059Cucumber (Gy14) v1cgymeB018
MELO3C026059Cucumber (Gy14) v1cgymeB527
MELO3C026059Cucurbita maxima (Rimu)cmameB361
MELO3C026059Wild cucumber (PI 183967)cpimeB451
MELO3C026059Watermelon (Charleston Gray)mewcgB136
MELO3C026059Watermelon (97103) v1mewmB165
MELO3C026059Cucurbita pepo (Zucchini)cpemeB477
MELO3C026059Bottle gourd (USVL1VR-Ls)lsimeB129
MELO3C026059Bottle gourd (USVL1VR-Ls)lsimeB176