MELO3C026049T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C026049T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPearli, putative isoform 2
Locationchr8 : 26723132 .. 26723554 (-)
Sequence length423
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACATTCACTATATGTACGATGTCCCTATTACACTTGCTCCAGTTCAGAGGAGATGTGTTCTAGTCCAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAATGCCTCTCATGACACAGATACAAAGTGAGCATAGTTACGTTAGTCCAGTAATGATGATGTCAGCATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCATCTTCATACATGCATGGTCACGGACGTGGTCATGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAATAA

mRNA sequence

ATGGAGAACATTCACTATATGTACGATGTCCCTATTACACTTGCTCCAGTTCAGAGGAGATGTGTTCTAGTCCAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAATGCCTCTCATGACACAGATACAAAGTGAGCATAGTTACGTTAGTCCAGTAATGATGATGTCAGCATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCATCTTCATACATGCATGGTCACGGACGTGGTCATGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAATAA

Coding sequence (CDS)

ATGGAGAACATTCACTATATGTACGATGTCCCTATTACACTTGCTCCAGTTCAGAGGAGATGTGTTCTAGTCCAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAATGCCTCTCATGACACAGATACAAAGTGAGCATAGTTACGTTAGTCCAGTAATGATGATGTCAGCATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCATCTTCATACATGCATGGTCACGGACGTGGTCATGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAATAA

Protein sequence

MENIHYMYDVPITLAPVQRRCVLVQKPDQLEEVDQHVEEMPLMTQIQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQQQ*
Homology
[Close]
BLAST of MELO3C026049T1 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 5.2e-61
Identity = 119/142 (83.80%), Postives = 124/142 (87.32%), Query Frame = 1 

Query: 1   MENIHYMYDVPITLAPVQRRCVLVQKPDQLEEVDQHVEEMPLMTQI--QSEHSYVSPVMM 60
           MENIHYMYDVPI  APVQRR  LVQ+ DQLEEVDQH EE+P MTQ   QSEH+YVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGE 120
           M  FG TYYD GVGQSSDFG GYYNSEA  SS++FGQQYYDLGSDPSSSYMHGHGRG GE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYYKVPAAVPEQSDEQQQ 141
           HNEYLYYKVPAAVPEQSDEQQQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQ 218

[Close]
BLAST of MELO3C026049T1 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 59/96 (61.46%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1   MENIHYMYDVPITLAPVQRRCVLVQKPDQLEEVDQHVEEMPLMTQIQSEHSYVSPVMMMS 60
           +  ++  Y +P T + V        K DQLEEVDQ+VEE+  +TQ QSEH YVS VMMM 
Sbjct: 150 LSTLYITYFLPETCSSV--------KSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMP 209

Query: 61  AFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQ 97
            FGTTYYD GVGQSSDF T YYNSEA  SSSNFGQQ
Sbjct: 210 TFGTTYYDYGVGQSSDFRTWYYNSEAGSSSSNFGQQ 237

The following BLAST results are available for this feature:
BLAST of MELO3C026049T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|5.2e-6183.80PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|2.4e-2161.46PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C026049MELO3C026049gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C026049T1MELO3C026049T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026049T1.cds1MELO3C026049T1.cds1CDS