MELO3C026049 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026049
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPearli, putative isoform 2
Locationchr8 : 26723132 .. 26723554 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACATTCACTATATGTACGATGTCCCTATTACACTTGCTCCAGTTCAGAGGAGATGTGTTCTAGTCCAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAATGCCTCTCATGACACAGATACAAAGTGAGCATAGTTACGTTAGTCCAGTAATGATGATGTCAGCATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCATCTTCATACATGCATGGTCACGGACGTGGTCATGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAATAA

mRNA sequence

ATGGAGAACATTCACTATATGTACGATGTCCCTATTACACTTGCTCCAGTTCAGAGGAGATGTGTTCTAGTCCAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAATGCCTCTCATGACACAGATACAAAGTGAGCATAGTTACGTTAGTCCAGTAATGATGATGTCAGCATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCATCTTCATACATGCATGGTCACGGACGTGGTCATGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAATAA

Coding sequence (CDS)

ATGGAGAACATTCACTATATGTACGATGTCCCTATTACACTTGCTCCAGTTCAGAGGAGATGTGTTCTAGTCCAAAAGCCTGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAATGCCTCTCATGACACAGATACAAAGTGAGCATAGTTACGTTAGTCCAGTAATGATGATGTCAGCATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAGAGGCAAGTCCATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCATCTTCATACATGCATGGTCACGGACGTGGTCATGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAACAATAA

Protein sequence

MENIHYMYDVPITLAPVQRRCVLVQKPDQLEEVDQHVEEMPLMTQIQSEHSYVSPVMMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGEHNEYLYYKVPAAVPEQSDEQQQ*
Homology
[Close]
BLAST of MELO3C026049 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 5.2e-61
Identity = 119/142 (83.80%), Postives = 124/142 (87.32%), Query Frame = 1 

Query: 1   MENIHYMYDVPITLAPVQRRCVLVQKPDQLEEVDQHVEEMPLMTQI--QSEHSYVSPVMM 60
           MENIHYMYDVPI  APVQRR  LVQ+ DQLEEVDQH EE+P MTQ   QSEH+YVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDLGSDPSSSYMHGHGRGHGE 120
           M  FG TYYD GVGQSSDFG GYYNSEA  SS++FGQQYYDLGSDPSSSYMHGHGRG GE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYYKVPAAVPEQSDEQQQ 141
           HNEYLYYKVPAAVPEQSDEQQQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQ 218

[Close]
BLAST of MELO3C026049 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 59/96 (61.46%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 1   MENIHYMYDVPITLAPVQRRCVLVQKPDQLEEVDQHVEEMPLMTQIQSEHSYVSPVMMMS 60
           +  ++  Y +P T + V        K DQLEEVDQ+VEE+  +TQ QSEH YVS VMMM 
Sbjct: 150 LSTLYITYFLPETCSSV--------KSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMP 209

Query: 61  AFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQ 97
            FGTTYYD GVGQSSDF T YYNSEA  SSSNFGQQ
Sbjct: 210 TFGTTYYDYGVGQSSDFRTWYYNSEAGSSSSNFGQQ 237

The following BLAST results are available for this feature:
BLAST of MELO3C026049 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|5.2e-6183.80PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
gi|778688386|ref|XP_011652738.1|2.4e-2161.46PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026049T1MELO3C026049T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026049Cucurbita pepo (Zucchini)cpemeB070
MELO3C026049Cucurbita pepo (Zucchini)cpemeB433
MELO3C026049Cucurbita pepo (Zucchini)cpemeB459
MELO3C026049Cucurbita pepo (Zucchini)cpemeB821
MELO3C026049Bottle gourd (USVL1VR-Ls)lsimeB157
MELO3C026049Bottle gourd (USVL1VR-Ls)lsimeB277
MELO3C026049Bottle gourd (USVL1VR-Ls)lsimeB276
MELO3C026049Cucumber (Gy14) v2cgybmeB222
MELO3C026049Cucumber (Gy14) v2cgybmeB284
MELO3C026049Cucumber (Gy14) v2cgybmeB450
MELO3C026049Silver-seed gourdcarmeB0025
MELO3C026049Silver-seed gourdcarmeB0168
MELO3C026049Silver-seed gourdcarmeB0283
MELO3C026049Silver-seed gourdcarmeB0627
MELO3C026049Cucumber (Chinese Long) v3cucmeB260
MELO3C026049Cucumber (Chinese Long) v3cucmeB335
MELO3C026049Cucumber (Chinese Long) v3cucmeB525
MELO3C026049Watermelon (97103) v2mewmbB521
MELO3C026049Watermelon (97103) v2mewmbB522
MELO3C026049Watermelon (97103) v2mewmbB533
MELO3C026049Wax gourdmewgoB616
MELO3C026049Wax gourdmewgoB626
MELO3C026049Wax gourdmewgoB652
MELO3C026049Melon (DHL92) v3.5.1memeB133
MELO3C026049Melon (DHL92) v3.5.1memeB146
MELO3C026049Cucumber (Gy14) v1cgymeB210
MELO3C026049Cucumber (Gy14) v1cgymeB319
MELO3C026049Cucurbita maxima (Rimu)cmameB610
MELO3C026049Cucurbita maxima (Rimu)cmameB709
MELO3C026049Cucurbita maxima (Rimu)cmameB775
MELO3C026049Cucurbita maxima (Rimu)cmameB801
MELO3C026049Cucurbita moschata (Rifu)cmomeB599
MELO3C026049Cucurbita moschata (Rifu)cmomeB701
MELO3C026049Cucurbita moschata (Rifu)cmomeB762
MELO3C026049Cucurbita moschata (Rifu)cmomeB785
MELO3C026049Wild cucumber (PI 183967)cpimeB254
MELO3C026049Wild cucumber (PI 183967)cpimeB330
MELO3C026049Wild cucumber (PI 183967)cpimeB517
MELO3C026049Cucumber (Chinese Long) v2cumeB325
MELO3C026049Cucumber (Chinese Long) v2cumeB264
MELO3C026049Cucumber (Chinese Long) v2cumeB506
MELO3C026049Watermelon (Charleston Gray)mewcgB510
MELO3C026049Watermelon (Charleston Gray)mewcgB511
MELO3C026049Watermelon (Charleston Gray)mewcgB525
MELO3C026049Watermelon (97103) v1mewmB556
MELO3C026049Watermelon (97103) v1mewmB575
MELO3C026049Watermelon (97103) v1mewmB600