MELO3C025670T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C025670T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionArabinose 5-phosphate isomerase KpsF
Locationchr7 : 4277359 .. 4277571 (+)
Sequence length213
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

mRNA sequence

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

Coding sequence (CDS)

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

Protein sequence

MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFVGTINPADAKA*
Homology
[Close]
BLAST of MELO3C025670T1 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
           M S E DAE SRPHVEGN+EEQLLD+LAQRL+S IRS Q DPEKKY IERLK LGATTFV
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

Query: 61  GTINPADAKA 71
           GT NPADA+A
Sbjct: 102 GTTNPADAEA 111

[Close]
BLAST of MELO3C025670T1 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
          MESEE DAE SRPHVEGNVEEQLLD+LAQR VS I+STQ D EKK+EIERLK LG+TTF 
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61 GTINPADAKA 71
           T NPA+A+A
Sbjct: 83 RTTNPANAEA 92

The following BLAST results are available for this feature:
BLAST of MELO3C025670T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|2.0e-2180.00PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|3.8e-2077.14PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C025670MELO3C025670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C025670T1MELO3C025670T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C025670T1.cds1MELO3C025670T1.cds1CDS