MELO3C025670 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025670
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionArabinose 5-phosphate isomerase KpsF
Locationchr7 : 4277359 .. 4277571 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

mRNA sequence

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

Coding sequence (CDS)

ATGGAAAGTGAGGAGTTTGATGCTGAATTTAGTCGTCCCCATGTTGAGGGGAATGTGGAAGAGCAGTTGCTTGATAAACTGGCTCAAAGATTGGTGTCGGAGATTAGATCGACACAATTAGACCCTGAAAAGAAGTATGAGATTGAACGATTGAAAGGCTTAGGTGCTACCACTTTTGTGGGGACAATAAATCCCGCTGATGCTAAAGCATGA

Protein sequence

MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFVGTINPADAKA*
Homology
[Close]
BLAST of MELO3C025670 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-21
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1   MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
           M S E DAE SRPHVEGN+EEQLLD+LAQRL+S IRS Q DPEKKY IERLK LGATTFV
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

Query: 61  GTINPADAKA 71
           GT NPADA+A
Sbjct: 102 GTTNPADAEA 111

[Close]
BLAST of MELO3C025670 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 3.8e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 

Query: 1  MESEEFDAEFSRPHVEGNVEEQLLDKLAQRLVSEIRSTQLDPEKKYEIERLKGLGATTFV 60
          MESEE DAE SRPHVEGNVEEQLLD+LAQR VS I+STQ D EKK+EIERLK LG+TTF 
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61 GTINPADAKA 71
           T NPA+A+A
Sbjct: 83 RTTNPANAEA 92

The following BLAST results are available for this feature:
BLAST of MELO3C025670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|2.0e-2180.00PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|3.8e-2077.14PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025670T1MELO3C025670T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025670Silver-seed gourdcarmeB0317
MELO3C025670Silver-seed gourdcarmeB0635
MELO3C025670Cucumber (Chinese Long) v3cucmeB299
MELO3C025670Watermelon (97103) v2mewmbB467
MELO3C025670Wax gourdmewgoB603
MELO3C025670Cucumber (Gy14) v1cgymeB042
MELO3C025670Cucurbita maxima (Rimu)cmameB046
MELO3C025670Cucurbita maxima (Rimu)cmameB443
MELO3C025670Cucurbita moschata (Rifu)cmomeB035
MELO3C025670Cucurbita moschata (Rifu)cmomeB433
MELO3C025670Wild cucumber (PI 183967)cpimeB293
MELO3C025670Cucumber (Chinese Long) v2cumeB299
MELO3C025670Watermelon (Charleston Gray)mewcgB457
MELO3C025670Watermelon (97103) v1mewmB539
MELO3C025670Cucurbita pepo (Zucchini)cpemeB532
MELO3C025670Cucurbita pepo (Zucchini)cpemeB737
MELO3C025670Bottle gourd (USVL1VR-Ls)lsimeB315
MELO3C025670Cucumber (Gy14) v2cgybmeB254