MELO3C025587T4 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025587T4
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Photosystem I subunit O
Location	chr12 : 14050817 .. 14051483 (-)
Sequence length	490

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGCCCAACAAAATCCCAATCCCTTTCCCCCTCCCTTCTACAAACCAACTGCACCTCCCGACCCCTAAATCCGCACTAATCCCGATCCCCACAAAATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTAGTCTCCGGTAATCCACTGCTACCTCCAATCAATCCATCTCCAACTCTCTCTGCTACTGCTGTTATTTATTTTTTGGTCTTTATTGTCGTCTTCGCAGGGTTCATCAAGTCGCCCGTGGCCGCCAGGAATCCGCTTAACGTAGGGCGTGCATCCCGTGGAAGGTTCACCTGGTAAGAGATTTAGCGATGCTCTGATTTGGAGAATGAGTGGTTGTTTGTTGTGTATTTTGATATTGATTTTGTTTTGGGGGAATGAAGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGATTTGGACTGATCGGGTGGATTGCCCCATCGAGCATTCCGGTGATCAATGGGAAGAGCTTGACGGGGCTGTTCTTTGAGAGCATTGGAACAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTAAATTACAATTTCCACCTAACTTATTATTATTATTATTATTCTTAA

mRNA sequence

AAAACGCCCAACAAAATCCCAATCCCTTTCCCCCTCCCTTCTACAAACCAACTGCACCTCCCGACCCCTAAATCCGCACTAATCCCGATCCCCACAAAATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTAGTCTCCGGGTTCATCAAGTCGCCCGTGGCCGCCAGGAATCCGCTTAACGTAGGGCGTGCATCCCGTGGAAGGTTCACCTGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGATTTGGACTGATCGGGTGGATTGCCCCATCGAGCATTCCGGTGATCAATGGGAAGAGCTTGACGGGGCTGTTCTTTGAGAGCATTGGAACAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTAAATTACAATTTCCACCTAACTTATTATTATTATTATTATTCTTAA

Coding sequence (CDS)

ATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTAGTCTCCGGGTTCATCAAGTCGCCCGTGGCCGCCAGGAATCCGCTTAACGTAGGGCGTGCATCCCGTGGAAGGTTCACCTGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGATTTGGACTGATCGGGTGGATTGCCCCATCGAGCATTCCGGTGATCAATGGGAAGAGCTTGACGGGGCTGTTCTTTGAGAGCATTGGAACAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTAA

Protein sequence

MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW*

Homology

[Close]

BLAST of MELO3C025587T4 vs. Swiss-Prot
Match: PSAO_ARATH (Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.7e-38
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60
           MA  FAT S+V GLG +S+++         S F+K  ++A+NPL +  AS GR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           WLRRDLNV+GFGLIGW+APSSIP INGKSLTGLFF+SIGTELAHFP+PPALTSQFW
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

[Close]

BLAST of MELO3C025587T4 vs. TrEMBL
Match: A0A0A0LT61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168350 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.3e-53
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 1


Query: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
           MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIK PVAARNPL+V  AS G+FTCFERDW
Sbjct: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60

Query: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           LRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFW
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

[Close]

BLAST of MELO3C025587T4 vs. TrEMBL
Match: A0A166C9D6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012226 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-42
Identity = 86/117 (73.50%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 4   AFATSSVAGLGTASLSSPS-----SRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFER 63
           A  TS++ GLGT+SLSSPS      ++  L SGF++SPVAARNPL + +AS G+FTCFE+
Sbjct: 2   AATTSTIVGLGTSSLSSPSHLVSAKQTVSLTSGFLRSPVAARNPLRLAQASGGKFTCFEQ 61

Query: 64  DWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           +WLRRDLNVIGFGLIGW+APSSIP+ING SLTGLFF SIGTELAHFPSPPALTSQFW
Sbjct: 62  NWLRRDLNVIGFGLIGWLAPSSIPIINGDSLTGLFFSSIGTELAHFPSPPALTSQFW 118

[Close]

BLAST of MELO3C025587T4 vs. TrEMBL
Match: A0A068UGV8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023914001 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-41
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 1


Query: 1   MATAFATSS-VAGLGTASLSSPS-SRSPRLV---SGFIKSPVAARNPLNVGRASRGRFTC 60
           MAT FAT+S V GLGT+SLSSPS + SP+ V   SGF+KSPV  RNPL++ + S G+FTC
Sbjct: 1   MATTFATASTVVGLGTSSLSSPSRASSPKKVCLNSGFLKSPVTTRNPLSLAQISGGKFTC 60

Query: 61  FERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           FERDWLR D NVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFP+ P LTS FW
Sbjct: 61  FERDWLRTDFNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPTGPPLTSPFW 120

[Close]

BLAST of MELO3C025587T4 vs. TrEMBL
Match: A0A067JJG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26726 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.6e-41
Identity = 90/119 (75.63%), Postives = 98/119 (82.35%), Query Frame = 1


Query: 1   MATAFATSS-VAGLGTASLSSPSSRSPR---LVSGFIKSPVAARNPLNVGRASRGRFTCF 60
           MA AFATSS V GLG++SLSSP S S R   L SGF+KS   ARNPL    ++ G+F CF
Sbjct: 1   MAAAFATSSTVIGLGSSSLSSPRSCSCRRTCLSSGFVKSVATARNPLRQAGSNGGKFMCF 60

Query: 61  ERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           ERDWLRRDLNVIGFGLIGW+APSSIP INGKSLTGLFFESIG ELAHFP+PPALTSQFW
Sbjct: 61  ERDWLRRDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGAELAHFPTPPALTSQFW 119

[Close]

BLAST of MELO3C025587T4 vs. TrEMBL
Match: A0A067DED3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032156mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-40
Identity = 88/115 (76.52%), Postives = 96/115 (83.48%), Query Frame = 1


Query: 2   ATAFATSS-VAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 61
           A AFA+SS V GLG++SLSSP   +  L S F+KSPVAARNPL V  A  G+ TCFERDW
Sbjct: 3   AAAFASSSPVVGLGSSSLSSPKRTA--LGSSFVKSPVAARNPLRVAGACGGKVTCFERDW 62

Query: 62  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           LR DLNVIGFGLIGW+APSSIP INGKSLTGLFFESIGTELAHFP+PP LTSQFW
Sbjct: 63  LRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFW 115

[Close]

BLAST of MELO3C025587T4 vs. TAIR10
Match: AT1G08380.1 (AT1G08380.1 photosystem I subunit O)

HSP 1 Score: 157.5 bits (397), Expect = 4.9e-39
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60
           MA  FAT S+V GLG +S+++         S F+K  ++A+NPL +  AS GR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           WLRRDLNV+GFGLIGW+APSSIP INGKSLTGLFF+SIGTELAHFP+PPALTSQFW
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFW 111

[Close]

BLAST of MELO3C025587T4 vs. NCBI nr
Match: gi|659127336|ref|XP_008463649.1| (PREDICTED: uncharacterized protein LOC103501744 [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1


Query: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
           MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW
Sbjct: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60

Query: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 115

[Close]

BLAST of MELO3C025587T4 vs. NCBI nr
Match: gi|449443468|ref|XP_004139499.1| (PREDICTED: photosystem I subunit O [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.3e-53
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 1


Query: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
           MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIK PVAARNPL+V  AS G+FTCFERDW
Sbjct: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60

Query: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           LRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQFW
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFW 115

[Close]

BLAST of MELO3C025587T4 vs. NCBI nr
Match: gi|1021045689|gb|KZN03470.1| (hypothetical protein DCAR_012226 [Daucus carota subsp. sativus])

HSP 1 Score: 178.7 bits (452), Expect = 5.8e-42
Identity = 86/117 (73.50%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 4   AFATSSVAGLGTASLSSPS-----SRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFER 63
           A  TS++ GLGT+SLSSPS      ++  L SGF++SPVAARNPL + +AS G+FTCFE+
Sbjct: 2   AATTSTIVGLGTSSLSSPSHLVSAKQTVSLTSGFLRSPVAARNPLRLAQASGGKFTCFEQ 61

Query: 64  DWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           +WLRRDLNVIGFGLIGW+APSSIP+ING SLTGLFF SIGTELAHFPSPPALTSQFW
Sbjct: 62  NWLRRDLNVIGFGLIGWLAPSSIPIINGDSLTGLFFSSIGTELAHFPSPPALTSQFW 118

[Close]

BLAST of MELO3C025587T4 vs. NCBI nr
Match: gi|661889291|emb|CDP06878.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-41
Identity = 91/120 (75.83%), Postives = 101/120 (84.17%), Query Frame = 1


Query: 1   MATAFATSS-VAGLGTASLSSPS-SRSPRLV---SGFIKSPVAARNPLNVGRASRGRFTC 60
           MAT FAT+S V GLGT+SLSSPS + SP+ V   SGF+KSPV  RNPL++ + S G+FTC
Sbjct: 1   MATTFATASTVVGLGTSSLSSPSRASSPKKVCLNSGFLKSPVTTRNPLSLAQISGGKFTC 60

Query: 61  FERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           FERDWLR D NVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFP+ P LTS FW
Sbjct: 61  FERDWLRTDFNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPTGPPLTSPFW 120

[Close]

BLAST of MELO3C025587T4 vs. NCBI nr
Match: gi|802753230|ref|XP_012088445.1| (PREDICTED: photosystem I subunit O [Jatropha curcas])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 90/119 (75.63%), Postives = 98/119 (82.35%), Query Frame = 1


Query: 1   MATAFATSS-VAGLGTASLSSPSSRSPR---LVSGFIKSPVAARNPLNVGRASRGRFTCF 60
           MA AFATSS V GLG++SLSSP S S R   L SGF+KS   ARNPL    ++ G+F CF
Sbjct: 1   MAAAFATSSTVIGLGSSSLSSPRSCSCRRTCLSSGFVKSVATARNPLRQAGSNGGKFMCF 60

Query: 61  ERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFW 116
           ERDWLRRDLNVIGFGLIGW+APSSIP INGKSLTGLFFESIG ELAHFP+PPALTSQFW
Sbjct: 61  ERDWLRRDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGAELAHFPTPPALTSQFW 119

The following BLAST results are available for this feature:

BLAST of MELO3C025587T4 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAO_ARATH	8.7e-38	67.24	Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1	[more]

BLAST of MELO3C025587T4 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT61_CUCSA	2.3e-53	93.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168350 PE=4 SV=1	[more]
A0A166C9D6_DAUCA	4.0e-42	73.50	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012226 PE=4 SV=1	[more]
A0A068UGV8_COFCA	2.0e-41	75.83	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023914001 PE=4 SV=1	[more]
A0A067JJG3_JATCU	7.6e-41	75.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26726 PE=4 SV=1	[more]
A0A067DED3_CITSI	2.2e-40	76.52	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032156mg PE=4 SV=1	[more]

BLAST of MELO3C025587T4 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08380.1	4.9e-39	67.24	photosystem I subunit O	[more]

BLAST of MELO3C025587T4 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127336\|ref\|XP_008463649.1\|	3.4e-58	100.00	PREDICTED: uncharacterized protein LOC103501744 [Cucumis melo]	[more]
gi\|449443468\|ref\|XP_004139499.1\|	3.3e-53	93.04	PREDICTED: photosystem I subunit O [Cucumis sativus]	[more]
gi\|1021045689\|gb\|KZN03470.1\|	5.8e-42	73.50	hypothetical protein DCAR_012226 [Daucus carota subsp. sativus]	[more]
gi\|661889291\|emb\|CDP06878.1\|	2.9e-41	75.83	unnamed protein product [Coffea canephora]	[more]
gi\|802753230\|ref\|XP_012088445.1\|	1.1e-40	75.63	PREDICTED: photosystem I subunit O [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009657	plastid organization
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025587	MELO3C025587	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025587T4	MELO3C025587T4-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025587T4.cds3	MELO3C025587T4.cds3	CDS
MELO3C025587T4.cds2	MELO3C025587T4.cds2	CDS
MELO3C025587T4.cds1	MELO3C025587T4.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36311	FAMILY NOT NAMED	coord: 2..115 score: 1.6