MELO3C025587T2 (mRNA) Melon (DHL92) v3.5.1

NameMELO3C025587T2
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhotosystem I subunit O
Locationchr12 : 14050193 .. 14051483 (-)
Sequence length736
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACGCCCAACAAAATCCCAATCCCTTTCCCCCTCCCTTCTACAAACCAACTGCACCTCCCGACCCCTAAATCCGCACTAATCCCGATCCCCACAAAATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTAGTCTCCGGTAATCCACTGCTACCTCCAATCAATCCATCTCCAACTCTCTCTGCTACTGCTGTTATTTATTTTTTGGTCTTTATTGTCGTCTTCGCAGGGTTCATCAAGTCGCCCGTGGCCGCCAGGAATCCGCTTAACGTAGGGCGTGCATCCCGTGGAAGGTTCACCTGGTAAGAGATTTAGCGATGCTCTGATTTGGAGAATGAGTGGTTGTTTGTTGTGTATTTTGATATTGATTTTGTTTTGGGGGAATGAAGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGATTTGGACTGATCGGGTGGATTGCCCCATCGAGCATTCCGGTGATCAATGGGAAGAGCTTGACGGGGCTGTTCTTTGAGAGCATTGGAACAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGGTAAATTACAATTTCCACCTAACTTATTATTATTATTATTATTCTTAATTTTTTATTTTTATTTTTATTTTTTTTAAATTAAGCTGATCAAATTAACTTTACCTTTAAATTTATTCACTTTTTATATACTTTTTAAAATTTAATTTAATTAAGAATTTATTGTTGTTTTTAAACAGTACTTTTCATTATCTATTAGCATTTTTTTGTATAAATTTTGGAAACTAAACATATTCATATTGTATTTCTCCTTGCATCAAAATTATTACAATTATTGAATAAATTTTGGTAAAAATTAATTTTATAAAATATTTGTGAGACTAGAATCGTAAAAACTTGTTCGTGATTATTTCAATTTAGATGATTGGTGTAATAAAGTAGTGTGTAATTCAGGTTGTGGCTGATTACGTGGCATTTGGGTCTCTTCATTACGCTTACTTTTGGACAAATCGGATTCAAGGGAAGGACCGAAGACTACTTTTCAAAGTGAATATGTAATAATTCTTAAAAAGGAGAGAGAATTCTAGTTTTTGTTATTATTATTCATGTTTATAAGTTTATAACTTATAAGTAGTGTTTGTGTCCCCCATTTTCTTCATGTATAAATCGTTTCAACCTCCAAATTTTGCTTCACTAATCCTATTCGACTCAACTCAACTCACCTCACTTCATTTT

mRNA sequence

AAAACGCCCAACAAAATCCCAATCCCTTTCCCCCTCCCTTCTACAAACCAACTGCACCTCCCGACCCCTAAATCCGCACTAATCCCGATCCCCACAAAATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTAGTCTCCGGGTTCATCAAGTCGCCCGTGGCCGCCAGGAATCCGCTTAACGTAGGGCGTGCATCCCGTGGAAGGTTCACCTGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGATTTGGACTGATCGGGTGGATTGCCCCATCGAGCATTCCGGTGATCAATGGGAAGAGCTTGACGGGGCTGTTCTTTGAGAGCATTGGAACAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGTGTGTAATTCAGGTTGTGGCTGATTACGTGGCATTTGGGTCTCTTCATTACGCTTACTTTTGGACAAATCGGATTCAAGGGAAGGACCGAAGACTACTTTTCAAAGTGAATATGTAATAATTCTTAAAAAGGAGAGAGAATTCTAGTTTTTGTTATTATTATTCATGTTTATAAGTTTATAACTTATAAGTAGTGTTTGTGTCCCCCATTTTCTTCATGTATAAATCGTTTCAACCTCCAAATTTTGCTTCACTAATCCTATTCGACTCAACTCAACTCACCTCACTTCATTTT

Coding sequence (CDS)

ATGGCCACCGCCTTCGCTACCTCCTCTGTCGCCGGCCTCGGAACCGCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCCCGTCTAGTCTCCGGGTTCATCAAGTCGCCCGTGGCCGCCAGGAATCCGCTTAACGTAGGGCGTGCATCCCGTGGAAGGTTCACCTGCTTTGAGAGGGATTGGCTACGGAGAGATCTGAATGTTATTGGATTTGGACTGATCGGGTGGATTGCCCCATCGAGCATTCCGGTGATCAATGGGAAGAGCTTGACGGGGCTGTTCTTTGAGAGCATTGGAACAGAGCTTGCCCATTTTCCTTCTCCACCCGCCCTCACTTCTCAATTCTGTGTGTAA

Protein sequence

MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQFCV*
BLAST of MELO3C025587T2 vs. Swiss-Prot
Match: PSAO_ARATH (Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-36
Identity = 77/115 (66.96%), Postives = 90/115 (78.26%), Query Frame = 1

Query: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60
           MA  FAT S+V GLG +S+++         S F+K  ++A+NPL +  AS GR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           WLRRDLNV+GFGLIGW+APSSIP INGKSLTGLFF+SIGTELAHFP+PPALTSQF
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQF 110

BLAST of MELO3C025587T2 vs. TrEMBL
Match: A0A0A0LT61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168350 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.3e-52
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 1

Query: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
           MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIK PVAARNPL+V  AS G+FTCFERDW
Sbjct: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60

Query: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           LRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQF
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQF 114

BLAST of MELO3C025587T2 vs. TrEMBL
Match: A0A166C9D6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012226 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.7e-41
Identity = 85/116 (73.28%), Postives = 99/116 (85.34%), Query Frame = 1

Query: 4   AFATSSVAGLGTASLSSPS-----SRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFER 63
           A  TS++ GLGT+SLSSPS      ++  L SGF++SPVAARNPL + +AS G+FTCFE+
Sbjct: 2   AATTSTIVGLGTSSLSSPSHLVSAKQTVSLTSGFLRSPVAARNPLRLAQASGGKFTCFEQ 61

Query: 64  DWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           +WLRRDLNVIGFGLIGW+APSSIP+ING SLTGLFF SIGTELAHFPSPPALTSQF
Sbjct: 62  NWLRRDLNVIGFGLIGWLAPSSIPIINGDSLTGLFFSSIGTELAHFPSPPALTSQF 117

BLAST of MELO3C025587T2 vs. TrEMBL
Match: A0A068UGV8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023914001 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-40
Identity = 90/119 (75.63%), Postives = 100/119 (84.03%), Query Frame = 1

Query: 1   MATAFATSS-VAGLGTASLSSPS-SRSPRLV---SGFIKSPVAARNPLNVGRASRGRFTC 60
           MAT FAT+S V GLGT+SLSSPS + SP+ V   SGF+KSPV  RNPL++ + S G+FTC
Sbjct: 1   MATTFATASTVVGLGTSSLSSPSRASSPKKVCLNSGFLKSPVTTRNPLSLAQISGGKFTC 60

Query: 61  FERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           FERDWLR D NVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFP+ P LTS F
Sbjct: 61  FERDWLRTDFNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPTGPPLTSPF 119

BLAST of MELO3C025587T2 vs. TrEMBL
Match: A0A067JJG3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26726 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.4e-39
Identity = 89/118 (75.42%), Postives = 97/118 (82.20%), Query Frame = 1

Query: 1   MATAFATSS-VAGLGTASLSSPSSRSPR---LVSGFIKSPVAARNPLNVGRASRGRFTCF 60
           MA AFATSS V GLG++SLSSP S S R   L SGF+KS   ARNPL    ++ G+F CF
Sbjct: 1   MAAAFATSSTVIGLGSSSLSSPRSCSCRRTCLSSGFVKSVATARNPLRQAGSNGGKFMCF 60

Query: 61  ERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           ERDWLRRDLNVIGFGLIGW+APSSIP INGKSLTGLFFESIG ELAHFP+PPALTSQF
Sbjct: 61  ERDWLRRDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGAELAHFPTPPALTSQF 118

BLAST of MELO3C025587T2 vs. TrEMBL
Match: A0A067DED3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032156mg PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = 1

Query: 2   ATAFATSS-VAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 61
           A AFA+SS V GLG++SLSSP   +  L S F+KSPVAARNPL V  A  G+ TCFERDW
Sbjct: 3   AAAFASSSPVVGLGSSSLSSPKRTA--LGSSFVKSPVAARNPLRVAGACGGKVTCFERDW 62

Query: 62  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           LR DLNVIGFGLIGW+APSSIP INGKSLTGLFFESIGTELAHFP+PP LTSQF
Sbjct: 63  LRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQF 114

BLAST of MELO3C025587T2 vs. TAIR10
Match: AT1G08380.1 (AT1G08380.1 photosystem I subunit O)

HSP 1 Score: 153.3 bits (386), Expect = 9.3e-38
Identity = 77/115 (66.96%), Postives = 90/115 (78.26%), Query Frame = 1

Query: 1   MATAFAT-SSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERD 60
           MA  FAT S+V GLG +S+++         S F+K  ++A+NPL +  AS GR TCFER+
Sbjct: 1   MAATFATPSTVIGLGGSSITTKP-----FSSSFLKPTLSAKNPLRLAGASGGRVTCFERN 60

Query: 61  WLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           WLRRDLNV+GFGLIGW+APSSIP INGKSLTGLFF+SIGTELAHFP+PPALTSQF
Sbjct: 61  WLRRDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQF 110

BLAST of MELO3C025587T2 vs. NCBI nr
Match: gi|659127336|ref|XP_008463649.1| (PREDICTED: uncharacterized protein LOC103501744 [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 6.4e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1

Query: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
           MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW
Sbjct: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60

Query: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 114

BLAST of MELO3C025587T2 vs. NCBI nr
Match: gi|449443468|ref|XP_004139499.1| (PREDICTED: photosystem I subunit O [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 6.2e-52
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 1

Query: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFERDW 60
           MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIK PVAARNPL+V  AS G+FTCFERDW
Sbjct: 1   MATAFATSSVAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60

Query: 61  LRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           LRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG ELAHFPSPPALTSQF
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQF 114

BLAST of MELO3C025587T2 vs. NCBI nr
Match: gi|1021045689|gb|KZN03470.1| (hypothetical protein DCAR_012226 [Daucus carota subsp. sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 85/116 (73.28%), Postives = 99/116 (85.34%), Query Frame = 1

Query: 4   AFATSSVAGLGTASLSSPS-----SRSPRLVSGFIKSPVAARNPLNVGRASRGRFTCFER 63
           A  TS++ GLGT+SLSSPS      ++  L SGF++SPVAARNPL + +AS G+FTCFE+
Sbjct: 2   AATTSTIVGLGTSSLSSPSHLVSAKQTVSLTSGFLRSPVAARNPLRLAQASGGKFTCFEQ 61

Query: 64  DWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           +WLRRDLNVIGFGLIGW+APSSIP+ING SLTGLFF SIGTELAHFPSPPALTSQF
Sbjct: 62  NWLRRDLNVIGFGLIGWLAPSSIPIINGDSLTGLFFSSIGTELAHFPSPPALTSQF 117

BLAST of MELO3C025587T2 vs. NCBI nr
Match: gi|661889291|emb|CDP06878.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 172.2 bits (435), Expect = 5.5e-40
Identity = 90/119 (75.63%), Postives = 100/119 (84.03%), Query Frame = 1

Query: 1   MATAFATSS-VAGLGTASLSSPS-SRSPRLV---SGFIKSPVAARNPLNVGRASRGRFTC 60
           MAT FAT+S V GLGT+SLSSPS + SP+ V   SGF+KSPV  RNPL++ + S G+FTC
Sbjct: 1   MATTFATASTVVGLGTSSLSSPSRASSPKKVCLNSGFLKSPVTTRNPLSLAQISGGKFTC 60

Query: 61  FERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           FERDWLR D NVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFP+ P LTS F
Sbjct: 61  FERDWLRTDFNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPTGPPLTSPF 119

BLAST of MELO3C025587T2 vs. NCBI nr
Match: gi|802753230|ref|XP_012088445.1| (PREDICTED: photosystem I subunit O [Jatropha curcas])

HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39
Identity = 89/118 (75.42%), Postives = 97/118 (82.20%), Query Frame = 1

Query: 1   MATAFATSS-VAGLGTASLSSPSSRSPR---LVSGFIKSPVAARNPLNVGRASRGRFTCF 60
           MA AFATSS V GLG++SLSSP S S R   L SGF+KS   ARNPL    ++ G+F CF
Sbjct: 1   MAAAFATSSTVIGLGSSSLSSPRSCSCRRTCLSSGFVKSVATARNPLRQAGSNGGKFMCF 60

Query: 61  ERDWLRRDLNVIGFGLIGWIAPSSIPVINGKSLTGLFFESIGTELAHFPSPPALTSQF 115
           ERDWLRRDLNVIGFGLIGW+APSSIP INGKSLTGLFFESIG ELAHFP+PPALTSQF
Sbjct: 61  ERDWLRRDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGAELAHFPTPPALTSQF 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSAO_ARATH1.6e-3666.96Photosystem I subunit O OS=Arabidopsis thaliana GN=PSAO PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LT61_CUCSA4.3e-5292.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168350 PE=4 SV=1[more]
A0A166C9D6_DAUCA7.7e-4173.28Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012226 PE=4 SV=1[more]
A0A068UGV8_COFCA3.8e-4075.63Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023914001 PE=4 SV=1[more]
A0A067JJG3_JATCU1.4e-3975.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26726 PE=4 SV=1[more]
A0A067DED3_CITSI4.2e-3976.32Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032156mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G08380.19.3e-3866.96 photosystem I subunit O[more]
Match NameE-valueIdentityDescription
gi|659127336|ref|XP_008463649.1|6.4e-57100.00PREDICTED: uncharacterized protein LOC103501744 [Cucumis melo][more]
gi|449443468|ref|XP_004139499.1|6.2e-5292.98PREDICTED: photosystem I subunit O [Cucumis sativus][more]
gi|1021045689|gb|KZN03470.1|1.1e-4073.28hypothetical protein DCAR_012226 [Daucus carota subsp. sativus][more]
gi|661889291|emb|CDP06878.1|5.5e-4075.63unnamed protein product [Coffea canephora][more]
gi|802753230|ref|XP_012088445.1|2.1e-3975.42PREDICTED: photosystem I subunit O [Jatropha curcas][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009657 plastid organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006364 rRNA processing
cellular_component GO:0009507 chloroplast
cellular_component GO:0009522 photosystem I
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C025587MELO3C025587gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C025587T2MELO3C025587T2-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C025587T2.cds4MELO3C025587T2.cds4CDS
MELO3C025587T2.cds3MELO3C025587T2.cds3CDS
MELO3C025587T2.cds2MELO3C025587T2.cds2CDS
MELO3C025587T2.cds1MELO3C025587T2.cds1CDS


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36311FAMILY NOT NAMEDcoord: 2..114
score: 4.6