MELO3C025038T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C025038T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSpindle pole body component alp4
Locationchr3 : 16409965 .. 16410843 (-)
Sequence length879
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCGATCGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAACCGAAGAAAATCAACAATTGTTTTTACAATACGTTGAAACCACGGTGAAGGAAAAATCGACAGTGAGTGAAAGAATCGCAACGAATCTACCAGTAATAAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGAACGAAGAACAAAGGAAGGAAATAGATCTTGAAGAACAAAGGAAGGAAATAGAAACTGAAGAGAAGGTGAGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGCGATCGAAACAAATTCAAGAAGGTCTGCGGCAAGAAGTTTGATTCACTTATTTTTTGGACTGAACGGAATCTCCAAAAATATAAACCGATCGATTCTGAGAGAGTAATCGTCGCTGTAATCAGATTCGATAGAACCACATTAGATTGGTCTCGGTCGAAGGATGAACACAATGCATTCAAGGATTGGTTGAGATTAAAACAGAGGTTGTTACTTCCTTTCCAATCAGTGAGGGAAGAACTTAACCGCAGGCGAGTTTTAGCAAACAAACCGAAAATCATGGAAGATCGGCGAGAATTACCGGCGAGACCCGAAACAAAGATCTCAGTGAAGAAAAAGTTGCTGTTCGGAGATGCCGGAAGTGACTGGTTTCGATGGAAAAAGAAGACGGCAGCAGTTGTGTGGATGAGAAGGAGGAAGAAAACGCCGGCAAATGGTGGTTGTCCGAGAAGGCGATACGTAAAGAAGAAGATGTTGCCATGA

mRNA sequence

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCGATCGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAACCGAAGAAAATCAACAATTGTTTTTACAATACGTTGAAACCACGGTGAAGGAAAAATCGACAGTGAGTGAAAGAATCGCAACGAATCTACCAGTAATAAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGAACGAAGAACAAAGGAAGGAAATAGATCTTGAAGAACAAAGGAAGGAAATAGAAACTGAAGAGAAGGTGAGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGCGATCGAAACAAATTCAAGAAGGTCTGCGGCAAGAAGTTTGATTCACTTATTTTTTGGACTGAACGGAATCTCCAAAAATATAAACCGATCGATTCTGAGAGAGTAATCGTCGCTGTAATCAGATTCGATAGAACCACATTAGATTGGTCTCGGTCGAAGGATGAACACAATGCATTCAAGGATTGGTTGAGATTAAAACAGAGGTTGTTACTTCCTTTCCAATCAGTGAGGGAAGAACTTAACCGCAGGCGAGTTTTAGCAAACAAACCGAAAATCATGGAAGATCGGCGAGAATTACCGGCGAGACCCGAAACAAAGATCTCAGTGAAGAAAAAGTTGCTGTTCGGAGATGCCGGAAGTGACTGGTTTCGATGGAAAAAGAAGACGGCAGCAGTTGTGTGGATGAGAAGGAGGAAGAAAACGCCGGCAAATGGTGGTTGTCCGAGAAGGCGATACGTAAAGAAGAAGATGTTGCCATGA

Coding sequence (CDS)

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCGATCGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAACCGAAGAAAATCAACAATTGTTTTTACAATACGTTGAAACCACGGTGAAGGAAAAATCGACAGTGAGTGAAAGAATCGCAACGAATCTACCAGTAATAAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGAACGAAGAACAAAGGAAGGAAATAGATCTTGAAGAACAAAGGAAGGAAATAGAAACTGAAGAGAAGGTGAGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGCGATCGAAACAAATTCAAGAAGGTCTGCGGCAAGAAGTTTGATTCACTTATTTTTTGGACTGAACGGAATCTCCAAAAATATAAACCGATCGATTCTGAGAGAGTAATCGTCGCTGTAATCAGATTCGATAGAACCACATTAGATTGGTCTCGGTCGAAGGATGAACACAATGCATTCAAGGATTGGTTGAGATTAAAACAGAGGTTGTTACTTCCTTTCCAATCAGTGAGGGAAGAACTTAACCGCAGGCGAGTTTTAGCAAACAAACCGAAAATCATGGAAGATCGGCGAGAATTACCGGCGAGACCCGAAACAAAGATCTCAGTGAAGAAAAAGTTGCTGTTCGGAGATGCCGGAAGTGACTGGTTTCGATGGAAAAAGAAGACGGCAGCAGTTGTGTGGATGAGAAGGAGGAAGAAAACGCCGGCAAATGGTGGTTGTCCGAGAAGGCGATACGTAAAGAAGAAGATGTTGCCATGA

Protein sequence

MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVETTVKEKSTVSERIATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEEQTKKIGIEEDISDRNKFKKVCGKKFDSLIFWTERNLQKYKPIDSERVIVAVIRFDRTTLDWSRSKDEHNAFKDWLRLKQRLLLPFQSVREELNRRRVLANKPKIMEDRRELPARPETKISVKKKLLFGDAGSDWFRWKKKTAAVVWMRRRKKTPANGGCPRRRYVKKKMLP*
Homology
[Close]
BLAST of MELO3C025038T1 vs. TrEMBL
Match: A0A0H1S888_9MOLU (Uncharacterized protein OS=Mycoplasmataceae bacterium CE_OT135 GN=MRECE_13c009 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 63/277 (22.74%), Postives = 129/277 (46.57%), Query Frame = 1 

Query: 2   EQMQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVET 61
           E+ +I+EKL++ EQE+I ++ +L +I   ++N   L + L +     EE +    +  E 
Sbjct: 215 EETEIKEKLQSKEQEIISLQNQLKEIKNNQQNNELLQEKLTQAEKAKEELETRLTKTQEE 274

Query: 62  TVKEKSTVSERIATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEE 121
            +K+              ++S  +      K++E + Q+ + ++E + KE+   ++ SE+
Sbjct: 275 HLKK--------------LESYQKAQEEEFKKLEEQIQKLQKEMEVKEKELTKTQEESEK 334

Query: 122 QTKKIGIEEDISDRNKFKKVCGKKFDSLIFWTERNLQKYKPIDSE-RVIVAVIRFDRTTL 181
           + +++ +E  I    K KK   +K  +L   T+  +   +  D E   +  +I+   TT+
Sbjct: 335 EKRRLEVE--ILSEQKQKKKLQEKVSALEILTDNQIVNQEDKDKEINQLKTLIQEKETTI 394

Query: 182 DW-----SRSKDEHNAFKDWLR----LKQRLLLPFQ-----------SVREELNRRRVLA 241
           +      ++  +E    ++ LR    L ++   PFQ            +++++   +   
Sbjct: 395 NQLQRQKTQKGEEFKKLQENLRHYRELAEKNAQPFQQEKKNFQKKIDELKKQITNLKKEK 454

Query: 242 NKPKIMEDRRELPARPET------KISVKKKLLFGDA 252
           NKP I ++ +EL   PE+      KI+ K  LLFG A
Sbjct: 455 NKPLIQKENQEL--NPESDWIGWIKINGKSILLFGGA 473

[Close]
BLAST of MELO3C025038T1 vs. NCBI nr
Match: gi|659113968|ref|XP_008456845.1| (PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo])

HSP 1 Score: 339.7 bits (870), Expect = 5.0e-90
Identity = 177/225 (78.67%), Postives = 190/225 (84.44%), Query Frame = 1 

Query: 79  VIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEEQTKKIGIEEDISDRNKF 138
           ++KSIVEGGSTPM+RIE +EQRKEI         +TEEKV EEQTKKIGIEEDISDR+KF
Sbjct: 1   MMKSIVEGGSTPMERIETKEQRKEI---------QTEEKVGEEQTKKIGIEEDISDRHKF 60

Query: 139 KKV-----CGKKFDSLIFWTERNLQKYKPIDSERVIVAVIRFDRTTLDWSRSKDEHNAFK 198
           KKV      GKKFDS IF  +RN QKY+PIDSERV VAVIRFD TTLDWSRSKDEHNAFK
Sbjct: 61  KKVELQRFSGKKFDSFIFRIKRNFQKYEPIDSERVNVAVIRFDGTTLDWSRSKDEHNAFK 120

Query: 199 DWLRLKQRLLLPFQSVREELNRRRVLANKPKIMEDRRELPARPETKISVKKKLLFGDAGS 258
           DWLRLKQRLLLPFQSVREEL+R R LANKP+I+EDRRELPARP+TKI VKKKL FGDAG 
Sbjct: 121 DWLRLKQRLLLPFQSVREELSRGRFLANKPEIVEDRRELPARPKTKIQVKKKLQFGDAGI 180

Query: 259 DWFRWKKKTAAVVWMRRRKKTPANGGCPRRRY------VKKKMLP 293
           DWFRWKKKTAAVVWMRRRKKTP NGGCPRRRY      VKK+MLP
Sbjct: 181 DWFRWKKKTAAVVWMRRRKKTPENGGCPRRRYGKRESGVKKEMLP 216

[Close]
BLAST of MELO3C025038T1 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 83/216 (38.43%), Postives = 128/216 (59.26%), Query Frame = 1 

Query: 1   MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVE 60
           M Q +IEE+LE  +QE+ GMKKELSK+PAIE +L  + KSL+ +R+Q+E+ QQL    +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61  TTVKEKSTVSERIATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSE 120
           T  KE+ST+S R+ T             +P K  E + + KE D    +         ++
Sbjct: 61  TNSKERSTMS-RLET------------ESPAKEFE-KMKGKEDDASSSKAIDSGRNFGAD 120

Query: 121 EQTKKIGIEEDISDRNKFKKV-----CGKKFDSLIFWTERNLQKYKPIDSERVIVAVIRF 180
              ++I  ++ +SDRNKFKK+      G+  DS +F  ER  Q +K  DSE+++V+ I F
Sbjct: 121 RNDRRIDGDDGVSDRNKFKKIEMPVFTGEDPDSWLFRAERYFQIHKLTDSEKMLVSTISF 180

Query: 181 DRTTLDWSRSKDEHNAFKDWLRLKQRLLLPFQSVRE 212
           D   L+W RS++E + F  W  +K+RLL+ F+S ++
Sbjct: 181 DGPALNWFRSQEERDKFTSWSNMKERLLIRFRSNKD 202

[Close]
BLAST of MELO3C025038T1 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 7.5e-30
Identity = 84/220 (38.18%), Postives = 126/220 (57.27%), Query Frame = 1 

Query: 1   MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVE 60
           M Q +IEE++E+FEQEV G+KKEL+K+P IE  L  LT++++ +R+Q+E+ QQ  L Y+E
Sbjct: 1   MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61  TTVKEKSTVSERI----ATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEE 120
              KE+S   ER+      N P +KS            +N++     D+E          
Sbjct: 61  MNAKERSMAGERMNESDTQNSPTVKS------------KNDKASSSRDVE---------- 120

Query: 121 KVSEEQTKKIGIEEDISDRNKFKKV-----CGKKFDSLIFWTERNLQKYKPIDSERVIVA 180
              E  TKK   +E+ +DR+KFKKV      G+  +S +F  ER  Q +K  +SE+++V+
Sbjct: 121 ---EINTKKNEPDENSNDRSKFKKVEMPVFTGEDPESWLFRAERYFQIHKLTESEKMLVS 180

Query: 181 VIRFDRTTLDWSRSKDEHNAFKDWLRLKQRLLLPFQSVRE 212
            I FD   L+W R+++E   F  W  LK+RLL+ FQS RE
Sbjct: 181 TICFDGPALNWYRAQEEREKFVSWTNLKERLLIRFQSTRE 195

[Close]
BLAST of MELO3C025038T1 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 1.0e-26
Identity = 78/217 (35.94%), Postives = 126/217 (58.06%), Query Frame = 1 

Query: 1   MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVE 60
           M Q +IEE+LE  +QE+ GMKKELSK+P IE +L  + KS+  +R+Q+E+ QQL    +E
Sbjct: 1   MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61  TTVKEKSTVSERIATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSE 120
           T+ KE+S +S + AT  P +K               + + KE D    R  IE++     
Sbjct: 61  TSSKERSMMSGQ-ATE-PTVKEF------------EKAKGKESDASSSRM-IESDRNFRA 120

Query: 121 EQTKKIGIEED-ISDRNKFKKV-----CGKKFDSLIFWTERNLQKYKPIDSERVIVAVIR 180
           + +++    +D   DRNKFKK+      G+  DS +F  ER  Q ++  +SE+++V+ + 
Sbjct: 121 DGSERRNDSDDSFPDRNKFKKIEMPIFTGEDPDSWLFRAERYFQIHRLTESEKLLVSTVS 180

Query: 181 FDRTTLDWSRSKDEHNAFKDWLRLKQRLLLPFQSVRE 212
           FD   L+W RS++E + F  W  +K+RLL+ F+S ++
Sbjct: 181 FDGPALNWYRSQEERDKFTSWSNMKERLLVRFRSNKD 202

[Close]
BLAST of MELO3C025038T1 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 87.8 bits (216), Expect = 3.4e-14
Identity = 65/214 (30.37%), Postives = 109/214 (50.93%), Query Frame = 1 

Query: 5   QIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVETTVK 64
           ++EE+++  EQE       L ++P I+ENL  LTKS++ +  Q  + QQ+ L+Y+E  ++
Sbjct: 4   KMEERMDLVEQE-------LQRLPIIDENLPLLTKSIKEMNAQINKQQQVILKYIEGIIR 63

Query: 65  EKSTVSERIATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEEQTK 124
           + S+  +    +    KS    G T +  + ++                     S+  T+
Sbjct: 64  DNSSAGKTTEGSTSHTKS----GDTILSEVVDD---------------------SKTNTR 123

Query: 125 KIGIEEDIS--DRNKFKKV-----CGKKFDSLIFWTERNLQKYKPIDSERVIVAVIRFDR 184
                EDI+  DR+KFKKV      G   D  +F  +R  + +     E++ V VI FD 
Sbjct: 124 ----HEDINPMDRSKFKKVEMPVFNGTNPDPWLFRADRFFKIH-----EKLTVVVISFDG 176

Query: 185 TTLDWSRSKDEHNAFKDWLRLKQRLLLPFQSVRE 212
           + LDW RS DE  AFK+W  LKQR+L+ F+++++
Sbjct: 184 SALDWYRSNDELEAFKNWDDLKQRILVRFRTIQD 176

The following BLAST results are available for this feature:
BLAST of MELO3C025038T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0H1S888_9MOLU6.2e-0722.74Uncharacterized protein OS=Mycoplasmataceae bacterium CE_OT135 GN=MRECE_13c009 P... [more]
BLAST of MELO3C025038T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113968|ref|XP_008456845.1|5.0e-9078.67PREDICTED: uncharacterized protein LOC103496676 [Cucumis melo][more]
gi|659109397|ref|XP_008454696.1|1.5e-3038.43PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo][more]
gi|659134102|ref|XP_008467029.1|7.5e-3038.18PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
gi|659119521|ref|XP_008459701.1|1.0e-2635.94PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo][more]
gi|659118578|ref|XP_008459193.1|3.4e-1430.37PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C025038MELO3C025038gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C025038T1MELO3C025038T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C025038T1.cds1MELO3C025038T1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 91..125
score: -coord: 27..47
score: -coord: 3..23
scor