MELO3C025038 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025038
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Spindle pole body component alp4
Location	chr3 : 16409965 .. 16410843 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCGATCGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAACCGAAGAAAATCAACAATTGTTTTTACAATACGTTGAAACCACGGTGAAGGAAAAATCGACAGTGAGTGAAAGAATCGCAACGAATCTACCAGTAATAAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGAACGAAGAACAAAGGAAGGAAATAGATCTTGAAGAACAAAGGAAGGAAATAGAAACTGAAGAGAAGGTGAGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGCGATCGAAACAAATTCAAGAAGGTCTGCGGCAAGAAGTTTGATTCACTTATTTTTTGGACTGAACGGAATCTCCAAAAATATAAACCGATCGATTCTGAGAGAGTAATCGTCGCTGTAATCAGATTCGATAGAACCACATTAGATTGGTCTCGGTCGAAGGATGAACACAATGCATTCAAGGATTGGTTGAGATTAAAACAGAGGTTGTTACTTCCTTTCCAATCAGTGAGGGAAGAACTTAACCGCAGGCGAGTTTTAGCAAACAAACCGAAAATCATGGAAGATCGGCGAGAATTACCGGCGAGACCCGAAACAAAGATCTCAGTGAAGAAAAAGTTGCTGTTCGGAGATGCCGGAAGTGACTGGTTTCGATGGAAAAAGAAGACGGCAGCAGTTGTGTGGATGAGAAGGAGGAAGAAAACGCCGGCAAATGGTGGTTGTCCGAGAAGGCGATACGTAAAGAAGAAGATGTTGCCATGA

mRNA sequence

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCGATCGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAACCGAAGAAAATCAACAATTGTTTTTACAATACGTTGAAACCACGGTGAAGGAAAAATCGACAGTGAGTGAAAGAATCGCAACGAATCTACCAGTAATAAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGAACGAAGAACAAAGGAAGGAAATAGATCTTGAAGAACAAAGGAAGGAAATAGAAACTGAAGAGAAGGTGAGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGCGATCGAAACAAATTCAAGAAGGTCTGCGGCAAGAAGTTTGATTCACTTATTTTTTGGACTGAACGGAATCTCCAAAAATATAAACCGATCGATTCTGAGAGAGTAATCGTCGCTGTAATCAGATTCGATAGAACCACATTAGATTGGTCTCGGTCGAAGGATGAACACAATGCATTCAAGGATTGGTTGAGATTAAAACAGAGGTTGTTACTTCCTTTCCAATCAGTGAGGGAAGAACTTAACCGCAGGCGAGTTTTAGCAAACAAACCGAAAATCATGGAAGATCGGCGAGAATTACCGGCGAGACCCGAAACAAAGATCTCAGTGAAGAAAAAGTTGCTGTTCGGAGATGCCGGAAGTGACTGGTTTCGATGGAAAAAGAAGACGGCAGCAGTTGTGTGGATGAGAAGGAGGAAGAAAACGCCGGCAAATGGTGGTTGTCCGAGAAGGCGATACGTAAAGAAGAAGATGTTGCCATGA

Coding sequence (CDS)

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCGATCGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAACCGAAGAAAATCAACAATTGTTTTTACAATACGTTGAAACCACGGTGAAGGAAAAATCGACAGTGAGTGAAAGAATCGCAACGAATCTACCAGTAATAAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGAACGAAGAACAAAGGAAGGAAATAGATCTTGAAGAACAAAGGAAGGAAATAGAAACTGAAGAGAAGGTGAGCGAAGAACAAACAAAGAAGATAGGAATTGAAGAAGATATAAGCGATCGAAACAAATTCAAGAAGGTCTGCGGCAAGAAGTTTGATTCACTTATTTTTTGGACTGAACGGAATCTCCAAAAATATAAACCGATCGATTCTGAGAGAGTAATCGTCGCTGTAATCAGATTCGATAGAACCACATTAGATTGGTCTCGGTCGAAGGATGAACACAATGCATTCAAGGATTGGTTGAGATTAAAACAGAGGTTGTTACTTCCTTTCCAATCAGTGAGGGAAGAACTTAACCGCAGGCGAGTTTTAGCAAACAAACCGAAAATCATGGAAGATCGGCGAGAATTACCGGCGAGACCCGAAACAAAGATCTCAGTGAAGAAAAAGTTGCTGTTCGGAGATGCCGGAAGTGACTGGTTTCGATGGAAAAAGAAGACGGCAGCAGTTGTGTGGATGAGAAGGAGGAAGAAAACGCCGGCAAATGGTGGTTGTCCGAGAAGGCGATACGTAAAGAAGAAGATGTTGCCATGA

Protein sequence

MEQMQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLQRLRIQTEENQQLFLQYVETTVKEKSTVSERIATNLPVIKSIVEGGSTPMKRIENEEQRKEIDLEEQRKEIETEEKVSEEQTKKIGIEEDISDRNKFKKVCGKKFDSLIFWTERNLQKYKPIDSERVIVAVIRFDRTTLDWSRSKDEHNAFKDWLRLKQRLLLPFQSVREELNRRRVLANKPKIMEDRRELPARPETKISVKKKLLFGDAGSDWFRWKKKTAAVVWMRRRKKTPANGGCPRRRYVKKKMLP*

Homology

[Close]

BLAST of MELO3C025038 vs. TrEMBL
Match: A0A0A0KBU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014720 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-53
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 61
            TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI
Sbjct: 1025 TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 1084

Query: 62   KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
            KDIRKRRKMEVFTDDD+VG+LSDSSDGSMFSEDELQDVDESSERRE SGSDE
Sbjct: 1085 KDIRKRRKMEVFTDDDDVGLLSDSSDGSMFSEDELQDVDESSERREASGSDE 1136

[Close]

BLAST of MELO3C025038 vs. TrEMBL
Match: A0A067K0D4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20375 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.6e-29
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRK-RRLALQGKG 61
            TNSSRKRRK D EESED++YGKGRT K  EGKSLESQ+EEFPK KR  RK RRLALQG+ 
Sbjct: 1031 TNSSRKRRKLDTEESEDTDYGKGRTAKEGEGKSLESQREEFPKGKRKARKRRRLALQGRR 1090

Query: 62   IKDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQD 99
            IK+IRKRRK ++ TDDD  G  S+SS+ S+FSEDE+QD
Sbjct: 1091 IKEIRKRRKADLLTDDDS-GPFSNSSEDSLFSEDEIQD 1127

[Close]

BLAST of MELO3C025038 vs. TrEMBL
Match: A0A061G3S9_THECC (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4 OS=Theobroma cacao GN=TCM_015616 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 71/113 (62.83%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 2   TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRK-RRLALQGKG 61
           TNSSRKRRK D EESED+EY KGRT K  E KSLESQKEEFPK KR  RK RRLALQG+G
Sbjct: 778 TNSSRKRRKADAEESEDNEYSKGRTTKEVESKSLESQKEEFPKGKRKARKRRRLALQGRG 837

Query: 62  IKDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
           IKD+++RRK++ F++DD  G  S+SS+ SMFSEDE+Q         E S S +
Sbjct: 838 IKDVQRRRKVD-FSEDD-AGPFSNSSEESMFSEDEIQGGGACPAGSEASASSD 888

[Close]

BLAST of MELO3C025038 vs. TrEMBL
Match: A0A061G1X7_THECC (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_015616 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 71/113 (62.83%), Postives = 84/113 (74.34%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRK-RRLALQGKG 61
            TNSSRKRRK D EESED+EY KGRT K  E KSLESQKEEFPK KR  RK RRLALQG+G
Sbjct: 1015 TNSSRKRRKADAEESEDNEYSKGRTTKEVESKSLESQKEEFPKGKRKARKRRRLALQGRG 1074

Query: 62   IKDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
            IKD+++RRK++ F++DD  G  S+SS+ SMFSEDE+Q         E S S +
Sbjct: 1075 IKDVQRRRKVD-FSEDD-AGPFSNSSEESMFSEDEIQGGGACPAGSEASASSD 1125

[Close]

BLAST of MELO3C025038 vs. TrEMBL
Match: A0A0D2T738_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G259800 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-26
Identity = 65/97 (67.01%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 2   TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRK-RRLALQGKG 61
           TNSS+KRRK D E+S+D+E+GKGR+ K  E KSLESQKEEFPK KR  RK RRLALQG+G
Sbjct: 757 TNSSKKRRKADAEDSDDNEFGKGRSTKEVESKSLESQKEEFPKGKRKARKRRRLALQGRG 816

Query: 62  IKDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQ 98
           IKD+R+RRK++ F+DDD  G  S+SS+ SMFS+DE+Q
Sbjct: 817 IKDVRRRRKVD-FSDDD-AGPFSNSSEESMFSDDEIQ 851

[Close]

BLAST of MELO3C025038 vs. TAIR10
Match: AT1G32810.2 (AT1G32810.2 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 44/103 (42.72%), Postives = 65/103 (63.11%), Query Frame = 1


Query: 2    TNSSRKRRKFDV--EESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRR-LALQG 61
            TNS +K+RK D   E+S+++E  KG   +  +     SQ EEFPK KR  RKRR L++Q 
Sbjct: 947  TNSGKKKRKLDAAEEDSDENESSKGGRKRLHQH---HSQGEEFPKGKRKARKRRRLSIQR 1006

Query: 62   KGIKDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDE 102
            KGIK +RK+R  E  +++DE    SD+S+ S+F ++E ++ +E
Sbjct: 1007 KGIKVLRKKRNEEEVSEEDEEDAFSDTSEESIFCDEEEEEEEE 1046

[Close]

BLAST of MELO3C025038 vs. NCBI nr
Match: gi|659126267|ref|XP_008463097.1| (PREDICTED: probable GPI-anchored adhesin-like protein PGA55 isoform X2 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 61
            TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI
Sbjct: 1015 TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 1074

Query: 62   KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
            KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE
Sbjct: 1075 KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 1126

[Close]

BLAST of MELO3C025038 vs. NCBI nr
Match: gi|659126263|ref|XP_008463095.1| (PREDICTED: dentin sialophosphoprotein isoform X1 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 61
            TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI
Sbjct: 1027 TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 1086

Query: 62   KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
            KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE
Sbjct: 1087 KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 1138

[Close]

BLAST of MELO3C025038 vs. NCBI nr
Match: gi|449441556|ref|XP_004138548.1| (PREDICTED: uncharacterized protein LOC101213020 isoform X1 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 61
            TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI
Sbjct: 1025 TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 1084

Query: 62   KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
            KDIRKRRKMEVFTDDD+VG+LSDSSDGSMFSEDELQDVDESSERRE SGSDE
Sbjct: 1085 KDIRKRRKMEVFTDDDDVGLLSDSSDGSMFSEDELQDVDESSERREASGSDE 1136

[Close]

BLAST of MELO3C025038 vs. NCBI nr
Match: gi|778709772|ref|XP_011656454.1| (PREDICTED: uncharacterized protein LOC101213020 isoform X2 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 61
            TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI
Sbjct: 1013 TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRKRRLALQGKGI 1072

Query: 62   KDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQDVDESSERREDSGSDE 114
            KDIRKRRKMEVFTDDD+VG+LSDSSDGSMFSEDELQDVDESSERRE SGSDE
Sbjct: 1073 KDIRKRRKMEVFTDDDDVGLLSDSSDGSMFSEDELQDVDESSERREASGSDE 1124

[Close]

BLAST of MELO3C025038 vs. NCBI nr
Match: gi|802733472|ref|XP_012086625.1| (PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-28
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1


Query: 2    TNSSRKRRKFDVEESEDSEYGKGRTVKATEGKSLESQKEEFPKRKRNTRK-RRLALQGKG 61
            TNSSRKRRK D EESED++YGKGRT K  EGKSLESQ+EEFPK KR  RK RRLALQG+ 
Sbjct: 1031 TNSSRKRRKLDTEESEDTDYGKGRTAKEGEGKSLESQREEFPKGKRKARKRRRLALQGRR 1090

Query: 62   IKDIRKRRKMEVFTDDDEVGMLSDSSDGSMFSEDELQD 99
            IK+IRKRRK ++ TDDD  G  S+SS+ S+FSEDE+QD
Sbjct: 1091 IKEIRKRRKADLLTDDDS-GPFSNSSEDSLFSEDEIQD 1127

The following BLAST results are available for this feature:

BLAST of MELO3C025038 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU4_CUCSA	2.9e-53	97.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014720 PE=4 SV=1	[more]
A0A067K0D4_JATCU	8.6e-29	71.43	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20375 PE=4 SV=1	[more]
A0A061G3S9_THECC	1.0e-26	62.83	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 4 OS=Theobroma c...	[more]
A0A061G1X7_THECC	1.0e-26	62.83	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Theobroma c...	[more]
A0A0D2T738_GOSRA	6.8e-26	67.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G259800 PE=4 SV=1	[more]

BLAST of MELO3C025038 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32810.2	1.4e-14	42.72	RING/FYVE/PHD zinc finger superfamily protein	[more]

BLAST of MELO3C025038 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126267\|ref\|XP_008463097.1\|	1.0e-54	100.00	PREDICTED: probable GPI-anchored adhesin-like protein PGA55 isoform X2 [Cucumis ...	[more]
gi\|659126263\|ref\|XP_008463095.1\|	1.0e-54	100.00	PREDICTED: dentin sialophosphoprotein isoform X1 [Cucumis melo]	[more]
gi\|449441556\|ref\|XP_004138548.1\|	4.2e-53	97.32	PREDICTED: uncharacterized protein LOC101213020 isoform X1 [Cucumis sativus]	[more]
gi\|778709772\|ref\|XP_011656454.1\|	4.2e-53	97.32	PREDICTED: uncharacterized protein LOC101213020 isoform X2 [Cucumis sativus]	[more]
gi\|802733472\|ref\|XP_012086625.1\|	1.2e-28	71.43	PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025038T1	MELO3C025038T1	mRNA
MELO3C025038T2	MELO3C025038T2	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 91..125 score: -coord: 27..47 score: -coord: 3..23 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025038	Silver-seed gourd	carmeB0564
MELO3C025038	Cucumber (Chinese Long) v3	cucmeB478
MELO3C025038	Wax gourd	mewgoB338
MELO3C025038	Cucumber (Gy14) v1	cgymeB537
MELO3C025038	Cucurbita maxima (Rimu)	cmameB029
MELO3C025038	Cucurbita maxima (Rimu)	cmameB410
MELO3C025038	Cucurbita moschata (Rifu)	cmomeB018
MELO3C025038	Cucurbita moschata (Rifu)	cmomeB401
MELO3C025038	Wild cucumber (PI 183967)	cpimeB468
MELO3C025038	Cucumber (Chinese Long) v2	cumeB415
MELO3C025038	Cucurbita pepo (Zucchini)	cpemeB305
MELO3C025038	Cucurbita pepo (Zucchini)	cpemeB512
MELO3C025038	Bottle gourd (USVL1VR-Ls)	lsimeB471
MELO3C025038	Cucumber (Gy14) v2	cgybmeB409