MELO3C024786T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C024786T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr11 : 8244276 .. 8244506 (+)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCAAGGAAGGATAA

mRNA sequence

ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCAAGGAAGGATAA

Coding sequence (CDS)

ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCAAGGAAGGATAA

Protein sequence

MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG*
Homology
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BLAST of MELO3C024786T1 vs. NCBI nr
Match: gi|659090012|ref|XP_008445785.1| (PREDICTED: uncharacterized protein LOC103488709 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-15
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDA 58
           ME+SLT+LH MLKI++LNIKS+ EVLMVQKGKNPKKR  DQG G GKVVVK S+VDA
Sbjct: 78  MEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA 134

The following BLAST results are available for this feature:
BLAST of MELO3C024786T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090012|ref|XP_008445785.1|5.2e-1577.19PREDICTED: uncharacterized protein LOC103488709 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C024786MELO3C024786gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C024786T1MELO3C024786T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C024786T1.cds1MELO3C024786T1.cds1CDS