MELO3C024786 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024786
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr11 : 8244276 .. 8244506 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCAAGGAAGGATAA

mRNA sequence

ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCAAGGAAGGATAA

Coding sequence (CDS)

ATGGAGAGGAGTTTGACTGAGCTGCATGAGATGCTGAAGATCGCTGAATTGAACATCAAGTCCAGTTATGAGGTTTTAATGGTGCAAAAAGGGAAGAATCCCAAGAAAAGGGAACGAGATCAAGGAAATGGTAAGGGGAAAGTTGTTGTCAAGGCATCAAGAGTTGATGCTTCTACTGCACCAAGGCTGATACCCAAACCTAAAGAGCCTAAGCCACCCAAGGAAGGATAA

Protein sequence

MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDASTAPRLIPKPKEPKPPKEG*
Homology
[Close]
BLAST of MELO3C024786 vs. NCBI nr
Match: gi|659090012|ref|XP_008445785.1| (PREDICTED: uncharacterized protein LOC103488709 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-15
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1   MERSLTELHEMLKIAELNIKSSYEVLMVQKGKNPKKRERDQGNGKGKVVVKASRVDA 58
           ME+SLT+LH MLKI++LNIKS+ EVLMVQKGKNPKKR  DQG G GKVVVK S+VDA
Sbjct: 78  MEKSLTKLHGMLKISKLNIKSNSEVLMVQKGKNPKKRRLDQGKGNGKVVVKTSKVDA 134

The following BLAST results are available for this feature:
BLAST of MELO3C024786 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090012|ref|XP_008445785.1|5.2e-1577.19PREDICTED: uncharacterized protein LOC103488709 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024786T1MELO3C024786T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024786Watermelon (97103) v2mewmbB092
MELO3C024786Wax gourdmewgoB126
MELO3C024786Cucumber (Gy14) v1cgymeB072
MELO3C024786Cucurbita maxima (Rimu)cmameB493
MELO3C024786Cucurbita maxima (Rimu)cmameB534
MELO3C024786Cucurbita moschata (Rifu)cmomeB483
MELO3C024786Cucurbita moschata (Rifu)cmomeB524
MELO3C024786Wild cucumber (PI 183967)cpimeB096
MELO3C024786Cucumber (Chinese Long) v2cumeB087
MELO3C024786Watermelon (Charleston Gray)mewcgB090
MELO3C024786Watermelon (97103) v1mewmB125
MELO3C024786Cucurbita pepo (Zucchini)cpemeB260
MELO3C024786Cucurbita pepo (Zucchini)cpemeB672
MELO3C024786Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C024786Cucumber (Gy14) v2cgybmeB083
MELO3C024786Silver-seed gourdcarmeB0416
MELO3C024786Silver-seed gourdcarmeB0935
MELO3C024786Cucumber (Chinese Long) v3cucmeB103