MELO3C024735T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C024735T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass, expressed
Locationchr11 : 7307999 .. 7308220 (-)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTTAAGAATTCTCTAAGGCACAAGACGAAGAAGTTCTCCCTAGAGATTCTGATCACCCCGCTGAGAATCGAGGAGGAAGCTCATAAGTATGACCAAAAGGAGGAGGAAAACATTGTCCCTAAAAAGAATTTCACTGTTGTTCTGAAACCAAAACTGAAATCAAAAGGAAAGAAAATGAAGGCTCAGAACCGTGGTCCTAACAACAAGAAAAATTCTTAA

mRNA sequence

GATTTTAAGAATTCTCTAAGGCACAAGACGAAGAAGTTCTCCCTAGAGATTCTGATCACCCCGCTGAGAATCGAGGAGGAAGCTCATAAGTATGACCAAAAGGAGGAGGAAAACATTGTCCCTAAAAAGAATTTCACTGTTGTTCTGAAACCAAAACTGAAATCAAAAGGAAAGAAAATGAAGGCTCAGAACCGTGGTCCTAACAACAAGAAAAATTCTTAA

Coding sequence (CDS)

GATTTTAAGAATTCTCTAAGGCACAAGACGAAGAAGTTCTCCCTAGAGATTCTGATCACCCCGCTGAGAATCGAGGAGGAAGCTCATAAGTATGACCAAAAGGAGGAGGAAAACATTGTCCCTAAAAAGAATTTCACTGTTGTTCTGAAACCAAAACTGAAATCAAAAGGAAAGAAAATGAAGGCTCAGAACCGTGGTCCTAACAACAAGAAAAATTCTTAA

Protein sequence

DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFTVVLKPKLKSKGKKMKAQNRGPNNKKNS*
Homology
[Close]
BLAST of MELO3C024735T1 vs. TrEMBL
Match: M5W680_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014392mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-07
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFT-----VVLKPKLKS 60
           DFKN+LRHKTK+FSLE LIT L IEEEA K+D KEE  ++   N             LK+
Sbjct: 112 DFKNALRHKTKEFSLESLITRLHIEEEARKHDMKEEVLLISNNNKNHNSNRNQTTAALKT 171

Query: 61  KGKKMK 62
            GK MK
Sbjct: 172 NGKNMK 177

[Close]
BLAST of MELO3C024735T1 vs. NCBI nr
Match: gi|659126076|ref|XP_008462998.1| (PREDICTED: uncharacterized protein LOC103501247 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 11 KKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFTVVLKPKLKSKGKKMKAQNR 66
          K+FSLE LIT LRIEEE  K+D KEE N++PKK  T+VLKP LKSKG KMK  ++
Sbjct: 6  KEFSLESLITRLRIEEETRKHDLKEEVNVIPKKKSTIVLKPDLKSKGNKMKCGSK 60

[Close]
BLAST of MELO3C024735T1 vs. NCBI nr
Match: gi|955391754|ref|XP_014627888.1| (PREDICTED: uncharacterized protein LOC106797581 [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEE-----ENIVPKKNFTVVLKPKLKS 60
           DFKN LRHKTK+FSLE LIT LRIEEEA + DQK+E      N + +KN   VLKP    
Sbjct: 140 DFKNLLRHKTKEFSLESLITRLRIEEEARRQDQKDEVLVVSHNNIKRKNTGAVLKP---- 199

Query: 61  KGKKMKAQNRGPNNKKN 73
            GK  K QNR  +N  N
Sbjct: 200 IGKNFKNQNRNVSNTSN 212

[Close]
BLAST of MELO3C024735T1 vs. NCBI nr
Match: gi|955343485|ref|XP_014618094.1| (PREDICTED: uncharacterized protein LOC106794728 [Glycine max])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-10
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEE-----ENIVPKKNFTVVLKPKLKS 60
           DFKN LRHKTK+FSL+ LIT LRIEEEA + DQK+E      N   +KN  VVLKP    
Sbjct: 114 DFKNLLRHKTKEFSLDSLITRLRIEEEARRQDQKDEVLVVSHNNTKRKNTGVVLKP---- 173

Query: 61  KGKKMKAQNRGPNNKKN 73
            GK  K QNR  +N  N
Sbjct: 174 IGKNFKNQNRNVSNTSN 186

[Close]
BLAST of MELO3C024735T1 vs. NCBI nr
Match: gi|828291416|ref|XP_012574804.1| (PREDICTED: uncharacterized protein LOC105852727 [Cicer arietinum])

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-09
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFTVVLKPKLKSKGKKM 60
           DFKNSL+HKTK+FSLE LIT LRIEEE+ K DQK+E  +V        +   LK  GK++
Sbjct: 141 DFKNSLKHKTKEFSLESLITHLRIEEESRKQDQKDEVLLVANNKKKKFIGSVLKQNGKQL 200

Query: 61  KAQNRGPNNKKNS 74
           K  N+    K N+
Sbjct: 201 KNPNKNFTLKTNN 213

[Close]
BLAST of MELO3C024735T1 vs. NCBI nr
Match: gi|955338959|ref|XP_014617124.1| (PREDICTED: uncharacterized protein LOC106794375 [Glycine max])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEE-----ENIVPKKNFTVVLKPKLKS 60
           DF N LRHKTK+F LE L+T L IEEEAH+ D+K+E      N   +KN   VLKP    
Sbjct: 47  DFINLLRHKTKEFPLESLLTRLHIEEEAHRQDRKDEVLVVSHNNTKRKNTGAVLKP---- 106

Query: 61  KGKKMKAQNRGPNNKKN 73
            GK  K QNR  +N  N
Sbjct: 107 IGKNFKNQNRNVSNTSN 119

The following BLAST results are available for this feature:
BLAST of MELO3C024735T1 vs. TrEMBL
Match NameE-valueIdentityDescription
M5W680_PRUPE4.6e-0753.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014392mg PE=4 SV=1[more]
BLAST of MELO3C024735T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126076|ref|XP_008462998.1|1.3e-1065.45PREDICTED: uncharacterized protein LOC103501247 [Cucumis melo][more]
gi|955391754|ref|XP_014627888.1|2.2e-1055.84PREDICTED: uncharacterized protein LOC106797581 [Glycine max][more]
gi|955343485|ref|XP_014618094.1|3.7e-1055.84PREDICTED: uncharacterized protein LOC106794728 [Glycine max][more]
gi|828291416|ref|XP_012574804.1|3.2e-0950.68PREDICTED: uncharacterized protein LOC105852727 [Cicer arietinum][more]
gi|955338959|ref|XP_014617124.1|3.5e-0850.65PREDICTED: uncharacterized protein LOC106794375 [Glycine max][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C024735MELO3C024735gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C024735T1MELO3C024735T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C024735T1.cds1MELO3C024735T1.cds1CDS