MELO3C024735 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024735
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass, expressed
Locationchr11 : 7307999 .. 7308220 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTTAAGAATTCTCTAAGGCACAAGACGAAGAAGTTCTCCCTAGAGATTCTGATCACCCCGCTGAGAATCGAGGAGGAAGCTCATAAGTATGACCAAAAGGAGGAGGAAAACATTGTCCCTAAAAAGAATTTCACTGTTGTTCTGAAACCAAAACTGAAATCAAAAGGAAAGAAAATGAAGGCTCAGAACCGTGGTCCTAACAACAAGAAAAATTCTTAA

mRNA sequence

GATTTTAAGAATTCTCTAAGGCACAAGACGAAGAAGTTCTCCCTAGAGATTCTGATCACCCCGCTGAGAATCGAGGAGGAAGCTCATAAGTATGACCAAAAGGAGGAGGAAAACATTGTCCCTAAAAAGAATTTCACTGTTGTTCTGAAACCAAAACTGAAATCAAAAGGAAAGAAAATGAAGGCTCAGAACCGTGGTCCTAACAACAAGAAAAATTCTTAA

Coding sequence (CDS)

GATTTTAAGAATTCTCTAAGGCACAAGACGAAGAAGTTCTCCCTAGAGATTCTGATCACCCCGCTGAGAATCGAGGAGGAAGCTCATAAGTATGACCAAAAGGAGGAGGAAAACATTGTCCCTAAAAAGAATTTCACTGTTGTTCTGAAACCAAAACTGAAATCAAAAGGAAAGAAAATGAAGGCTCAGAACCGTGGTCCTAACAACAAGAAAAATTCTTAA

Protein sequence

DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFTVVLKPKLKSKGKKMKAQNRGPNNKKNS*
Homology
[Close]
BLAST of MELO3C024735 vs. TrEMBL
Match: M5W680_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014392mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-07
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFT-----VVLKPKLKS 60
           DFKN+LRHKTK+FSLE LIT L IEEEA K+D KEE  ++   N             LK+
Sbjct: 112 DFKNALRHKTKEFSLESLITRLHIEEEARKHDMKEEVLLISNNNKNHNSNRNQTTAALKT 171

Query: 61  KGKKMK 62
            GK MK
Sbjct: 172 NGKNMK 177

[Close]
BLAST of MELO3C024735 vs. NCBI nr
Match: gi|659126076|ref|XP_008462998.1| (PREDICTED: uncharacterized protein LOC103501247 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 11 KKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFTVVLKPKLKSKGKKMKAQNR 66
          K+FSLE LIT LRIEEE  K+D KEE N++PKK  T+VLKP LKSKG KMK  ++
Sbjct: 6  KEFSLESLITRLRIEEETRKHDLKEEVNVIPKKKSTIVLKPDLKSKGNKMKCGSK 60

[Close]
BLAST of MELO3C024735 vs. NCBI nr
Match: gi|955391754|ref|XP_014627888.1| (PREDICTED: uncharacterized protein LOC106797581 [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEE-----ENIVPKKNFTVVLKPKLKS 60
           DFKN LRHKTK+FSLE LIT LRIEEEA + DQK+E      N + +KN   VLKP    
Sbjct: 140 DFKNLLRHKTKEFSLESLITRLRIEEEARRQDQKDEVLVVSHNNIKRKNTGAVLKP---- 199

Query: 61  KGKKMKAQNRGPNNKKN 73
            GK  K QNR  +N  N
Sbjct: 200 IGKNFKNQNRNVSNTSN 212

[Close]
BLAST of MELO3C024735 vs. NCBI nr
Match: gi|955343485|ref|XP_014618094.1| (PREDICTED: uncharacterized protein LOC106794728 [Glycine max])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-10
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEE-----ENIVPKKNFTVVLKPKLKS 60
           DFKN LRHKTK+FSL+ LIT LRIEEEA + DQK+E      N   +KN  VVLKP    
Sbjct: 114 DFKNLLRHKTKEFSLDSLITRLRIEEEARRQDQKDEVLVVSHNNTKRKNTGVVLKP---- 173

Query: 61  KGKKMKAQNRGPNNKKN 73
            GK  K QNR  +N  N
Sbjct: 174 IGKNFKNQNRNVSNTSN 186

[Close]
BLAST of MELO3C024735 vs. NCBI nr
Match: gi|828291416|ref|XP_012574804.1| (PREDICTED: uncharacterized protein LOC105852727 [Cicer arietinum])

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-09
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEEENIVPKKNFTVVLKPKLKSKGKKM 60
           DFKNSL+HKTK+FSLE LIT LRIEEE+ K DQK+E  +V        +   LK  GK++
Sbjct: 141 DFKNSLKHKTKEFSLESLITHLRIEEESRKQDQKDEVLLVANNKKKKFIGSVLKQNGKQL 200

Query: 61  KAQNRGPNNKKNS 74
           K  N+    K N+
Sbjct: 201 KNPNKNFTLKTNN 213

[Close]
BLAST of MELO3C024735 vs. NCBI nr
Match: gi|955338959|ref|XP_014617124.1| (PREDICTED: uncharacterized protein LOC106794375 [Glycine max])

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-08
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 1   DFKNSLRHKTKKFSLEILITPLRIEEEAHKYDQKEE-----ENIVPKKNFTVVLKPKLKS 60
           DF N LRHKTK+F LE L+T L IEEEAH+ D+K+E      N   +KN   VLKP    
Sbjct: 47  DFINLLRHKTKEFPLESLLTRLHIEEEAHRQDRKDEVLVVSHNNTKRKNTGAVLKP---- 106

Query: 61  KGKKMKAQNRGPNNKKN 73
            GK  K QNR  +N  N
Sbjct: 107 IGKNFKNQNRNVSNTSN 119

The following BLAST results are available for this feature:
BLAST of MELO3C024735 vs. TrEMBL
Match NameE-valueIdentityDescription
M5W680_PRUPE4.6e-0753.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb014392mg PE=4 SV=1[more]
BLAST of MELO3C024735 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126076|ref|XP_008462998.1|1.3e-1065.45PREDICTED: uncharacterized protein LOC103501247 [Cucumis melo][more]
gi|955391754|ref|XP_014627888.1|2.2e-1055.84PREDICTED: uncharacterized protein LOC106797581 [Glycine max][more]
gi|955343485|ref|XP_014618094.1|3.7e-1055.84PREDICTED: uncharacterized protein LOC106794728 [Glycine max][more]
gi|828291416|ref|XP_012574804.1|3.2e-0950.68PREDICTED: uncharacterized protein LOC105852727 [Cicer arietinum][more]
gi|955338959|ref|XP_014617124.1|3.5e-0850.65PREDICTED: uncharacterized protein LOC106794375 [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54921melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024735T1MELO3C024735T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54921MU54921transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024735Watermelon (97103) v1mewmB125
MELO3C024735Cucurbita pepo (Zucchini)cpemeB260
MELO3C024735Cucurbita pepo (Zucchini)cpemeB672
MELO3C024735Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C024735Cucumber (Gy14) v2cgybmeB083
MELO3C024735Silver-seed gourdcarmeB0935
MELO3C024735Silver-seed gourdcarmeB1022
MELO3C024735Cucumber (Chinese Long) v3cucmeB103
MELO3C024735Watermelon (97103) v2mewmbB092
MELO3C024735Wax gourdmewgoB126
MELO3C024735Cucumber (Gy14) v1cgymeB440
MELO3C024735Cucurbita maxima (Rimu)cmameB493
MELO3C024735Cucurbita maxima (Rimu)cmameB534
MELO3C024735Cucurbita moschata (Rifu)cmomeB483
MELO3C024735Cucurbita moschata (Rifu)cmomeB524
MELO3C024735Wild cucumber (PI 183967)cpimeB096
MELO3C024735Cucumber (Chinese Long) v2cumeB087
MELO3C024735Watermelon (Charleston Gray)mewcgB090