MELO3C024727T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C024727T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATPase family AAA domain-containing protein 1-A
Locationchr11 : 7232471 .. 7232668 (+)
Sequence length198
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

mRNA sequence

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

Coding sequence (CDS)

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

Protein sequence

MGIAPRLDRLITNWRRWRNTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF*
Homology
[Close]
BLAST of MELO3C024727T1 vs. TrEMBL
Match: A0A0A0LTU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050430 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 568 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 613

[Close]
BLAST of MELO3C024727T1 vs. NCBI nr
Match: gi|778658090|ref|XP_011652073.1| (PREDICTED: uncharacterized protein LOC101214766 isoform X1 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]
BLAST of MELO3C024727T1 vs. NCBI nr
Match: gi|700209308|gb|KGN64404.1| (hypothetical protein Csa_1G050430 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 568 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 613

[Close]
BLAST of MELO3C024727T1 vs. NCBI nr
Match: gi|659067489|ref|XP_008439688.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 545 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 590

[Close]
BLAST of MELO3C024727T1 vs. NCBI nr
Match: gi|778658092|ref|XP_011652077.1| (PREDICTED: uncharacterized protein LOC101214766 isoform X2 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]
BLAST of MELO3C024727T1 vs. NCBI nr
Match: gi|778658098|ref|XP_011652083.1| (PREDICTED: uncharacterized protein LOC101214766 isoform X3 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 519 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 564

The following BLAST results are available for this feature:
BLAST of MELO3C024727T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTU2_CUCSA1.7e-1697.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050430 PE=4 SV=1[more]
BLAST of MELO3C024727T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778658090|ref|XP_011652073.1|2.4e-1697.83PREDICTED: uncharacterized protein LOC101214766 isoform X1 [Cucumis sativus][more]
gi|700209308|gb|KGN64404.1|2.4e-1697.83hypothetical protein Csa_1G050430 [Cucumis sativus][more]
gi|659067489|ref|XP_008439688.1|2.4e-1697.83PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 [Cucumis me... [more]
gi|778658092|ref|XP_011652077.1|2.4e-1697.83PREDICTED: uncharacterized protein LOC101214766 isoform X2 [Cucumis sativus][more]
gi|778658098|ref|XP_011652083.1|2.4e-1697.83PREDICTED: uncharacterized protein LOC101214766 isoform X3 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C024727MELO3C024727gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C024727T1MELO3C024727T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C024727T1.cds1MELO3C024727T1.cds1CDS