MELO3C024727 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024727
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATPase family AAA domain-containing protein 1-A
Location	chr11 : 7232471 .. 7232668 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

mRNA sequence

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

Coding sequence (CDS)

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

Protein sequence

MGIAPRLDRLITNWRRWRNTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF*

Homology

[Close]

BLAST of MELO3C024727 vs. TrEMBL
Match: A0A0A0LTU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050430 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 568 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 613

[Close]

BLAST of MELO3C024727 vs. NCBI nr
Match: gi|778658090|ref|XP_011652073.1| (PREDICTED: uncharacterized protein LOC101214766 isoform X1 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]

BLAST of MELO3C024727 vs. NCBI nr
Match: gi|700209308|gb|KGN64404.1| (hypothetical protein Csa_1G050430 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 568 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 613

[Close]

BLAST of MELO3C024727 vs. NCBI nr
Match: gi|659067489|ref|XP_008439688.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 545 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 590

[Close]

BLAST of MELO3C024727 vs. NCBI nr
Match: gi|778658092|ref|XP_011652077.1| (PREDICTED: uncharacterized protein LOC101214766 isoform X2 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]

BLAST of MELO3C024727 vs. NCBI nr
Match: gi|778658098|ref|XP_011652083.1| (PREDICTED: uncharacterized protein LOC101214766 isoform X3 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 519 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 564

The following BLAST results are available for this feature:

BLAST of MELO3C024727 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU2_CUCSA	1.7e-16	97.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050430 PE=4 SV=1	[more]

BLAST of MELO3C024727 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658090\|ref\|XP_011652073.1\|	2.4e-16	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X1 [Cucumis sativus]	[more]
gi\|700209308\|gb\|KGN64404.1\|	2.4e-16	97.83	hypothetical protein Csa_1G050430 [Cucumis sativus]	[more]
gi\|659067489\|ref\|XP_008439688.1\|	2.4e-16	97.83	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 [Cucumis me...	[more]
gi\|778658092\|ref\|XP_011652077.1\|	2.4e-16	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X2 [Cucumis sativus]	[more]
gi\|778658098\|ref\|XP_011652083.1\|	2.4e-16	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X3 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54921	melon EST collection version 4.0	transcribed_cluster
MU60903	melon EST collection version 4.0	transcribed_cluster
MU61831	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024727T1	MELO3C024727T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54921	MU54921	transcribed_cluster
MU61831	MU61831	transcribed_cluster
MU60903	MU60903	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024727	Wax gourd	mewgoB126
MELO3C024727	Cucumber (Gy14) v1	cgymeB440
MELO3C024727	Cucurbita maxima (Rimu)	cmameB493
MELO3C024727	Cucurbita maxima (Rimu)	cmameB534
MELO3C024727	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024727	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024727	Wild cucumber (PI 183967)	cpimeB096
MELO3C024727	Cucumber (Chinese Long) v2	cumeB087
MELO3C024727	Watermelon (Charleston Gray)	mewcgB090
MELO3C024727	Watermelon (97103) v1	mewmB125
MELO3C024727	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024727	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024727	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C024727	Cucumber (Gy14) v2	cgybmeB083
MELO3C024727	Silver-seed gourd	carmeB1022
MELO3C024727	Cucumber (Chinese Long) v3	cucmeB103
MELO3C024727	Watermelon (97103) v2	mewmbB092