MELO3C024059T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C024059T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSimilar to ATP-dependent RNA helicase
Locationchr1 : 7890615 .. 7891232 (-)
Sequence length618
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAAGCACATTTATGGATGCCTTTGTGATGGGGCTGTCACCGGAACTGAGGGCAGAGGTGGTAAGTCGGCATCCGAAGAAGAAGGATGAATGTATGAGAGAAGCCCAGTTGGTGAACGATCACAAAAATCTGGCTTTGAATGAGTTGGGGCTTCAAGGGGCTAATACGATGAAAGCCCAGCTGACGAAAGCCCCTATACCCCAGATGGAAAAATCTGAATTAAAAGACAAGGAGACCCAAACCAGACAAATAACTCTAAACACACGTGGGAATTTCGTAAAGAAAGAAGCGGGGGAGGCATCGACGAAGAGACTCTCAGATAGTGAGTTACAAATGAGGATTGATAAAGGTCTGTATTTCAGGTGTAACGACAAATGGTCACAAGGACACTGGGGCAAGATGAGAGAGAATAGAGAACTGAGGTTGTATATTACGAATGTCAAAGTGGAACTCGAGGAAGAAGGAGAAGTCAAAACAGAGGCTAATGAAATCGTGGAACTGAAAAATTATGGAGCTAGGAGACAATGTGGAAATCTCCTTGAGGTCCTTACATGGTTTTTCCGACAAAGGGGCCATAAAACTGAAGGGAAAAATAAAAGGGATAGGTGGTGA

mRNA sequence

ATGGCAGAAAGCACATTTATGGATGCCTTTGTGATGGGGCTGTCACCGGAACTGAGGGCAGAGGTGGTAAGTCGGCATCCGAAGAAGAAGGATGAATGTATGAGAGAAGCCCAGTTGGTGAACGATCACAAAAATCTGGCTTTGAATGAGTTGGGGCTTCAAGGGGCTAATACGATGAAAGCCCAGCTGACGAAAGCCCCTATACCCCAGATGGAAAAATCTGAATTAAAAGACAAGGAGACCCAAACCAGACAAATAACTCTAAACACACGTGGGAATTTCGTAAAGAAAGAAGCGGGGGAGGCATCGACGAAGAGACTCTCAGATAGTGAGTTACAAATGAGGATTGATAAAGGTCTGTATTTCAGGTGTAACGACAAATGGTCACAAGGACACTGGGGCAAGATGAGAGAGAATAGAGAACTGAGGTTGTATATTACGAATGTCAAAGTGGAACTCGAGGAAGAAGGAGAAGTCAAAACAGAGGCTAATGAAATCGTGGAACTGAAAAATTATGGAGCTAGGAGACAATGTGGAAATCTCCTTGAGGTCCTTACATGGTTTTTCCGACAAAGGGGCCATAAAACTGAAGGGAAAAATAAAAGGGATAGGTGGTGA

Coding sequence (CDS)

ATGGCAGAAAGCACATTTATGGATGCCTTTGTGATGGGGCTGTCACCGGAACTGAGGGCAGAGGTGGTAAGTCGGCATCCGAAGAAGAAGGATGAATGTATGAGAGAAGCCCAGTTGGTGAACGATCACAAAAATCTGGCTTTGAATGAGTTGGGGCTTCAAGGGGCTAATACGATGAAAGCCCAGCTGACGAAAGCCCCTATACCCCAGATGGAAAAATCTGAATTAAAAGACAAGGAGACCCAAACCAGACAAATAACTCTAAACACACGTGGGAATTTCGTAAAGAAAGAAGCGGGGGAGGCATCGACGAAGAGACTCTCAGATAGTGAGTTACAAATGAGGATTGATAAAGGTCTGTATTTCAGGTGTAACGACAAATGGTCACAAGGACACTGGGGCAAGATGAGAGAGAATAGAGAACTGAGGTTGTATATTACGAATGTCAAAGTGGAACTCGAGGAAGAAGGAGAAGTCAAAACAGAGGCTAATGAAATCGTGGAACTGAAAAATTATGGAGCTAGGAGACAATGTGGAAATCTCCTTGAGGTCCTTACATGGTTTTTCCGACAAAGGGGCCATAAAACTGAAGGGAAAAATAAAAGGGATAGGTGGTGA

Protein sequence

MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALNELGLQGANTMKAQLTKAPIPQMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRIDKGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGEVKTEANEIVELKNYGARRQCGNLLEVLTWFFRQRGHKTEGKNKRDRW*
Homology
[Close]
BLAST of MELO3C024059T1 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 

Query: 84  RQITLNTRGNFVKKEAGEASTKRLSDSELQMRIDKGLYFRCNDKWSQGHWGKMRENRELR 143
           +Q+TL  +GNFVKKE  +   KRLSDSE + R+DKGL FRCNDK+S GH  K + NREL 
Sbjct: 210 KQLTLPIKGNFVKKEP-QPPVKRLSDSEFRARLDKGLCFRCNDKYSPGHRCKAKTNRELM 269

Query: 144 LYITNVKVELEEEGEVKTEANEIVEL 170
            +ITN   EL  E E + E  E  EL
Sbjct: 270 FFITNEDEELGTEKEKEDEVTEEAEL 294

[Close]
BLAST of MELO3C024059T1 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 1.6e-01
Identity = 26/77 (33.77%), Postives = 40/77 (51.95%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALNELGLQGANTMK 60
           MAES  +DAFV GL   L+AEV SRHP   +EC  + +      + A+ +L L       
Sbjct: 166 MAESVLIDAFVTGLETNLQAEVKSRHPVTLEECSGKPKWA----DFAMKQLTLPIKGNFV 225

Query: 61  AQLTKAPIPQMEKSELK 78
            +  + P+ ++  SE +
Sbjct: 226 KKEPQPPVKRLSDSEFR 238


HSP 2 Score: 66.2 bits (160), Expect = 5.2e-08
Identity = 57/172 (33.14%), Postives = 85/172 (49.42%), Query Frame = 1 

Query: 3    ESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALNELGLQGANTMKAQ 62
            ESTFM+    GL PE+RAE     P      M  AQ V D +NLA+     + A      
Sbjct: 887  ESTFMN----GLLPEIRAEQRLLQPYGLGHLMEMAQRVED-RNLAM-----RAAREPNGP 946

Query: 63   LTKAPIPQMEKSELKDKET-QTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRIDKGLY 122
             +   +    + E K  E  QTR + +   G     +  E   KRL++SELQ R +KGL+
Sbjct: 947  KSTKMLSTANRGEWKIGENFQTRAVAV---GEKTMSQRREIPIKRLTESELQARREKGLW 1006

Query: 123  FRCNDKWSQGHWGKMRENRELRLYITNVKVELEEE--GEVKTEANEIVELKN 172
            F+C +K+S GH    R  +ELR+ + +   E ++    +  TE   ++ELK+
Sbjct: 1007 FKCEEKFSPGH----RCKKELRVLLVHEDEEEDDNQFDDRATEEPALIELKD 1041

[Close]
BLAST of MELO3C024059T1 vs. TrEMBL
Match: W9R6D8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026170 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-07
Identity = 51/171 (29.82%), Postives = 78/171 (45.61%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALN---ELGLQGAN 60
           ++E     +FV  L PE+RAE+    P      M  AQ V +   +      +    G N
Sbjct: 96  VSEQVLESSFVNRLKPEVRAEIRLMKPIWLGRIMEVAQRVEERNLMVCGPKPKAHRSGFN 155

Query: 61  TMKAQLTKAPIPQMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRID 120
             K   T         S L+  E  T +  +  +   + ++ G A  +R+ D+ELQ + +
Sbjct: 156 ETKGGQTTTN----SGSGLRFYEAPTEKGKILDKRKAINQDTGAAPFRRMIDAELQAKRE 215

Query: 121 KGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGEVKTEANEIVE 169
           KGL +RC+ K+  GH      NREL++ I     E EE+GEV+ E  E  E
Sbjct: 216 KGLCYRCDGKYYVGH---RCPNRELQVLIVR---EEEEQGEVEVEKIEAAE 256

[Close]
BLAST of MELO3C024059T1 vs. TrEMBL
Match: A0A151S7Y7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_027260 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-06
Identity = 38/151 (25.17%), Postives = 75/151 (49.67%), Query Frame = 1 

Query: 10  FVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALNELGLQGANTMKAQLTKAPIP 69
           F+ GL  E++AE+        +E M  A L+    ++   E+G   + T +    K    
Sbjct: 101 FLNGLKEEVKAELRLHRLNSLEEIMDLALLIESRNSILRKEVGGSLSTTNRGGWNKNLY- 160

Query: 70  QMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRIDKGLYFRCNDKWS 129
                  +D+E +       T+G   +K  G+ + + ++D+E Q R  +G+ FRC +K+S
Sbjct: 161 ----GSRRDEEKKNHDEPRETKGEDNQKGEGKTNWRWMTDAEYQERWRRGICFRCEEKYS 220

Query: 130 QGHWGKMRENRELRLYITNVKVELEEEGEVK 161
            GH   + +N+++R+ +   + E +EE E++
Sbjct: 221 PGH---VCKNKQIRIMLEEGETEEDEEEEIQ 243

[Close]
BLAST of MELO3C024059T1 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 4.5e-29
Identity = 86/179 (48.04%), Postives = 112/179 (62.57%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALN----ELGL--- 60
           MA S  +DAFV GL P L+AEV+SRHP+  ++CMREAQLVND +NLAL     ELG+   
Sbjct: 137 MAGSVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVND-RNLALKLSKMELGMTEW 196

Query: 61  -QGANTMKAQLTKAPIPQMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSEL 120
            +G ++   +L     P   K++      Q +QIT+  +GNF K   GE   KRLSD+E 
Sbjct: 197 EEGGSSKVKKLGDVDKPPPRKTDF-----QMKQITIPIKGNFKK---GEPPVKRLSDAEF 256

Query: 121 QMRIDKGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGEVKTEANE-IVELK 171
           + R+D+GL FRCNDK+S GH  K +E REL  +I N + E +EEGE   E  E  VELK
Sbjct: 257 RARLDRGLCFRCNDKYSPGHRCKTKEKRELMFFIMNEEEE-DEEGESHEEVTEGTVELK 305

[Close]
BLAST of MELO3C024059T1 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 5.9e-29
Identity = 80/174 (45.98%), Postives = 110/174 (63.22%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALN----ELGLQGA 60
           MAES   DAF+ GL P L+AEVVSRHP+  +ECM EA LVND  NLAL     ELG+   
Sbjct: 194 MAESVLRDAFLTGLEPTLQAEVVSRHPQTLEECMMEALLVNDC-NLALKLSRAELGIHKY 253

Query: 61  NTMKAQLTKAPIPQMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRI 120
              +   TKAP+   EK   +  E Q +QIT+  +G++ K   G+   KRLSD+E + R+
Sbjct: 254 KGGEPANTKAPVSN-EKGNPRKNEFQMKQITIPLKGSYQK---GDPLVKRLSDAEFRSRL 313

Query: 121 DKGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGEVKTEANEIVELK 171
           ++GL FRCN+K+S GH  K++E REL L+I N +   +E    +T+  +I+ELK
Sbjct: 314 ERGLCFRCNEKYSHGHHCKVKEKRELMLFILNEEESADEGENSETQREKIMELK 362

[Close]
BLAST of MELO3C024059T1 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 79/168 (47.02%), Postives = 104/168 (61.90%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALN----ELGLQGA 60
           MAES   DAF+ GL P L+AEV+SRHP   +ECM  AQLVND +NLAL     E+G+   
Sbjct: 188 MAESVLRDAFLTGLEPALQAEVMSRHPHTLEECMMAAQLVND-RNLALKLAHAEMGIIEP 247

Query: 61  NTMKAQLTKAPIPQMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRI 120
              +A  TK P    +K  ++  E Q +QIT+  +G++ K   GE   KRLSD+E + R+
Sbjct: 248 KRNEATSTKVPWNN-DKGNMRKNEFQMKQITIPLKGSYQK---GEPPVKRLSDAEFRARL 307

Query: 121 DKGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGEVKTEAN 165
           DKGL FRCN+K+S GH  K++E  EL L+I N + E  EEGE     N
Sbjct: 308 DKGLCFRCNEKYSHGHRCKIKEKGELMLFILN-EEESTEEGESSEAQN 349

[Close]
BLAST of MELO3C024059T1 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 74/172 (43.02%), Postives = 103/172 (59.88%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALNELGLQGA--NT 60
           M ES   DAF+ GL P L+AEVVS +P   +ECMREAQLVND +NLAL     +G   N 
Sbjct: 194 MTESVLRDAFLTGLEPNLQAEVVSHNPLTLEECMREAQLVND-RNLALQWSKAEGGGLNY 253

Query: 61  MKAQLTKAPIPQM-EKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRID 120
            K + +    P+  EK   +  E   +Q+T+  +GN+ K E      KRL D E + R+D
Sbjct: 254 KKGEGSTNKGPEGGEKGITRKTEFPLKQVTIPIKGNYQKSEP---PVKRLLDVEFKARLD 313

Query: 121 KGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGEVKTEANEIVEL 170
           KGL F+CN+++S GH  KM++ REL L+I N +  LE+E   +    E++EL
Sbjct: 314 KGLCFKCNERYSPGHRCKMKDKRELMLFIMNEEESLEDEDRTEETNEEVLEL 361

[Close]
BLAST of MELO3C024059T1 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 6.7e-25
Identity = 78/178 (43.82%), Postives = 107/178 (60.11%), Query Frame = 1 

Query: 1   MAESTFMDAFVMGLSPELRAEVVSRHPKKKDECMREAQLVNDHKNLALN----ELGLQGA 60
           M ES   D F+ GL P L+ EV+S HP+  +ECM  AQLVND +NLAL     E+G+   
Sbjct: 194 MVESVLRDTFLTGLEPTLQVEVMSCHPQTLEECMMAAQLVND-RNLALKLAQAEMGIMEP 253

Query: 61  NTMKAQLTKAPIPQMEKSELKDKETQTRQITLNTRGNFVKKEAGEASTKRLSDSELQMRI 120
              +A  TK P    +K  ++  E Q +QIT+  + ++ K   GE   KRLSD+E + R+
Sbjct: 254 KRSEATNTKVPWNN-DKGSMRKNEFQMKQITIPLKRSYHK---GEPPVKRLSDAEFRARL 313

Query: 121 DKGLYFRCNDKWSQGHWGKMRENRELRLYITNVKVELEEEGE----VKTEANEIVELK 171
           DKGL FRCN+K+S  H  K++E R+L L+I N + E  EEGE     KTE  EI +L+
Sbjct: 314 DKGLCFRCNEKYSHEHHCKIKEKRDLMLFILN-EEESTEEGEGSDTQKTEPLEINQLE 365

The following BLAST results are available for this feature:
BLAST of MELO3C024059T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCI2_CUCME2.2e-1454.65Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCI2_CUCME1.6e-0133.77Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
W9R6D8_9ROSA9.8e-0729.82Uncharacterized protein OS=Morus notabilis GN=L484_026170 PE=4 SV=1[more]
A0A151S7Y7_CAJCA8.3e-0625.17Uncharacterized protein OS=Cajanus cajan GN=KK1_027260 PE=4 SV=1[more]
BLAST of MELO3C024059T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659094491|ref|XP_008448087.1|4.5e-2948.04PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
gi|659112485|ref|XP_008456244.1|5.9e-2945.98PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
gi|659093928|ref|XP_008447791.1|2.5e-2747.02PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|3.0e-2543.02PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659093726|ref|XP_008447685.1|6.7e-2543.82PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0016491 oxidoreductase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C024059MELO3C024059gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C024059T1.cds1MELO3C024059T1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C024059T1MELO3C024059T1-proteinpolypeptide