MELO3C024018.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024018.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	E3 ubiquitin-protein ligase
Location	chr04 : 23591727 .. 23592283 (-)
Sequence length	557

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATATTTATTCCATAAAATAAACGATTTCCTATTCAGAAACTAAATTGCCATTCTAATTCCATTATAAATCTAAATTTAGATTCATAACTTCCTTCCTTCATTCTCTTCATCCCATTCATAATTCCTAATTAATTCCCAATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGAAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAG

mRNA sequence

TAATAATATTTATTCCATAAAATAAACGATTTCCTATTCAGAAACTAAATTGCCATTCTAATTCCATTATAAATCTAAATTTAGATTCATAACTTCCTTCCTTCATTCTCTTCATCCCATTCATAATTCCTAATTAATTCCCAATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGAAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAG

Coding sequence (CDS)

ATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGAAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAG

Protein sequence

MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKIELCNVD

Homology

[Close]

BLAST of MELO3C024018.2.1 vs. NCBI nr
Match: KGN58546.1 (hypothetical protein Csa_3G680620 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60

Query: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKKE 100
           EEDPA              SE+ DG  E E  GDCCIC EELN    EK KKE
Sbjct: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN--GGEKKKKE 106

[Close]

BLAST of MELO3C024018.2.1 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 67  EEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPL 126
           +E DG  EEE EGDC +C E L      KG++EV R+ CGHVYHK CIL W++ + SCPL
Sbjct: 163 QEFDGLREEEEEGDCSVCCEAL------KGEEEVSRIPCGHVYHKCCILKWLQMSNSCPL 222

Query: 127 CRRKIE 133
           CR K+E
Sbjct: 223 CRTKLE 222

[Close]

BLAST of MELO3C024018.2.1 vs. NCBI nr
Match: XP_008466247.1 (PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 6.4e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 70  DGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRR 129
           DG   EE+   CC+C+E+LN E  E+ ++EV R+ CGHVYHK CIL W+  N SCPLCRR
Sbjct: 156 DGNGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

Query: 130 K 131
           +
Sbjct: 216 E 216

[Close]

BLAST of MELO3C024018.2.1 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 67  EEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPL 126
           E+ DG+  E+L G+C +C++E+ +     G +EV R+ CGHVYHKSC+L W++RN SCPL
Sbjct: 180 EKFDGFGGEDL-GNCSVCYDEMKD-----GGEEVSRIPCGHVYHKSCVLTWLQRNNSCPL 239

Query: 127 CRRKIE 133
           CR+K+E
Sbjct: 240 CRKKLE 239

[Close]

BLAST of MELO3C024018.2.1 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 67  EEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPL 126
           ++ DG  EEE EGDC +C E L      KG++EV R+ CGHVYHK CIL W++ + SCPL
Sbjct: 163 QKFDGLREEEEEGDCSVCCEAL------KGEEEVSRIPCGHVYHKFCILKWLQMSNSCPL 222

Query: 127 CRRKIE 133
           CR K+E
Sbjct: 223 CRTKLE 222

[Close]

BLAST of MELO3C024018.2.1 vs. TAIR10
Match: AT5G05910.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 76  ELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKI 132
           ++E  C IC E+L +  N+  K  VC  KC H +H +CI +W+R +  CP+CR  +
Sbjct: 87  DVELCCPICLEDLKKVDNDDDKVVVCLSKCNHSFHMNCIFSWLRESQDCPICRSTV 142

[Close]

BLAST of MELO3C024018.2.1 vs. TAIR10
Match: AT5G41440.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 74  EEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKIEL 133
           EE  EG C IC EE      + G + +C  KC HV+H+ C+L+W+  N +CP+CR     
Sbjct: 71  EEGDEGCCSICLEEF-----KIGHELMCIKKCRHVFHRFCMLSWIDANRNCPICR----- 124

Query: 134 CNVD 138
           C+VD
Sbjct: 131 CSVD 124

[Close]

BLAST of MELO3C024018.2.1 vs. TAIR10
Match: AT4G05350.1 (RING/U-box superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-08
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 81  CCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKI 132
           C IC E L   P     ++V R+ C HV+H  C+L W++R  +CPLCR +I
Sbjct: 157 CSICLESLVSGPK---PRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

[Close]

BLAST of MELO3C024018.2.1 vs. TAIR10
Match: AT4G12190.1 (RING/U-box superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 81  CCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKI 132
           C IC E L   P     +++ R+ C HV+H  C+L W++R  +CPLCR ++
Sbjct: 22  CSICLESLVSGPK---PRDITRMTCSHVFHNGCLLEWLKRKNTCPLCRTEL 69

[Close]

BLAST of MELO3C024018.2.1 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 58  VIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAW 117
           +I +ED   E+V           C IC EE   E  E+GK+    +KC H+YH SCI++W
Sbjct: 126 IITDEDLVKEKV-----------CAICKEEF--EVGEEGKE----LKCLHLYHSSCIVSW 184

Query: 118 VRRNLSCPLCRRKIEL 134
           +  + +CP+CR ++ L
Sbjct: 186 LNIHNTCPICRFEVNL 184

[Close]

BLAST of MELO3C024018.2.1 vs. Swiss-Prot
Match: sp|Q08109|HRD1_YEAST (ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-06
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 81  CCICWEELNEEPNEK----GKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129
           C IC +EL   PN++      K+  R+ CGH+ H SC+  W+ R+ +CP+CR
Sbjct: 349 CIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICR 400

[Close]

BLAST of MELO3C024018.2.1 vs. Swiss-Prot
Match: sp|Q9UKV5|AMFR_HUMAN (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 24/95 (25.26%), Postives = 45/95 (47.37%), Query Frame = 0


Query: 44  VIHPFRRRVLRDE---RVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEV 103
           + H  +RR+ R +   RV+   +         E      DC ICW+ +         +  
Sbjct: 301 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSM---------QAA 360

Query: 104 CRVKCGHVYHKSCILAWVRRNLSCPLCRRKIELCN 136
            ++ CGH++H SC+ +W+ ++ SCP CR  + + +
Sbjct: 361 RKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386

[Close]

BLAST of MELO3C024018.2.1 vs. Swiss-Prot
Match: sp|Q9R049|AMFR_MOUSE (E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 24/95 (25.26%), Postives = 45/95 (47.37%), Query Frame = 0


Query: 44  VIHPFRRRVLRDE---RVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEV 103
           + H  +RR+ R +   RV+   +         E      DC ICW+ +         +  
Sbjct: 301 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSM---------QAA 360

Query: 104 CRVKCGHVYHKSCILAWVRRNLSCPLCRRKIELCN 136
            ++ CGH++H SC+ +W+ ++ SCP CR  + + +
Sbjct: 361 RKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386

[Close]

BLAST of MELO3C024018.2.1 vs. Swiss-Prot
Match: sp|Q8GXF8|SHGR9_ARATH (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 20/51 (39.22%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 78  EGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129
           E +C IC EE++E       ++VC + C H +H  CIL W+ +  +CP CR
Sbjct: 211 EVECVICKEEMSE------GRDVCEMPCQHFFHWKCILPWLSKKNTCPFCR 255

[Close]

BLAST of MELO3C024018.2.1 vs. Swiss-Prot
Match: sp|Q9VE61|RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 62  EDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRN 121
           E P  E V   E  +LE  C +C     +EP E+G+K    + C H +H+ CIL W+++ 
Sbjct: 53  ELPVHEIVKSDEGGDLE--CSVC-----KEPAEEGQKYRI-LPCKHEFHEECILLWLKKT 112

Query: 122 LSCPLCRRKIE 133
            SCPLCR ++E
Sbjct: 113 NSCPLCRYELE 115

[Close]

BLAST of MELO3C024018.2.1 vs. TrEMBL
Match: tr|A0A0A0LER3|A0A0A0LER3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60

Query: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKKE 100
           EEDPA              SE+ DG  E E  GDCCIC EELN    EK KKE
Sbjct: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN--GGEKKKKE 106

[Close]

BLAST of MELO3C024018.2.1 vs. TrEMBL
Match: tr|A0A1S3CR16|A0A1S3CR16_CUCME (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 70  DGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRR 129
           DG   EE+   CC+C+E+LN E  E+ ++EV R+ CGHVYHK CIL W+  N SCPLCRR
Sbjct: 156 DGNGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

Query: 130 K 131
           +
Sbjct: 216 E 216

[Close]

BLAST of MELO3C024018.2.1 vs. TrEMBL
Match: tr|A0A1S3B605|A0A1S3B605_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 67  EEVDGY--EEEELEGDCCICWEELNEEPNEKGK-KEVCRVKCGHVYHKSCILAWVRRNLS 126
           ++ DG+  EEEE  GDC +C+EEL      KGK KEV R+ CGHVYHKSC+L W++ N S
Sbjct: 101 QKFDGFNKEEEEEIGDCSVCYEEL------KGKGKEVSRIPCGHVYHKSCVLTWLQINNS 160

Query: 127 CPLCRRKIE 133
           CPLCR  +E
Sbjct: 161 CPLCRAPLE 163

[Close]

BLAST of MELO3C024018.2.1 vs. TrEMBL
Match: tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 70  DGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129
           DG   E + G CC+C+E+LN E  E+ K+E  R+ CGHVYHKSCIL W+  N SCPLCR
Sbjct: 154 DGNGGEGMGGQCCVCYEDLNCE-REEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCR 211

[Close]

BLAST of MELO3C024018.2.1 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 67  EEVDGYEEEELEGD--CCICWEEL--NEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNL 126
           E+ DG   EE EGD  C +C+E+L    E      KEV R+ CGH+YHKSCIL W++ + 
Sbjct: 161 EKYDGNGGEEKEGDDQCSVCYEQLYGKRENEXXXXKEVSRIPCGHMYHKSCILKWLKISN 220

Query: 127 SCPLCRRKIE 133
           SCPLCRR++E
Sbjct: 221 SCPLCRRELE 230

The following BLAST results are available for this feature:

BLAST of MELO3C024018.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58546.1	1.5e-13	52.21	hypothetical protein Csa_3G680620 [Cucumis sativus]	[more]
XP_022947933.1	3.8e-12	56.06	E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ...	[more]
XP_008466247.1	6.4e-12	55.74	PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo]	[more]
XP_023539471.1	1.1e-11	51.52	uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]	[more]
XP_023006826.1	1.4e-11	54.55	E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima]	[more]

BLAST of MELO3C024018.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05910.1	1.8e-08	39.29	RING/U-box superfamily protein	[more]
AT5G41440.1	6.9e-08	42.19	RING/U-box superfamily protein	[more]
AT4G05350.1	9.0e-08	43.14	RING/U-box superfamily protein	[more]
AT4G12190.1	2.0e-07	39.22	RING/U-box superfamily protein	[more]
AT1G68180.1	2.6e-07	36.84	RING/U-box superfamily protein	[more]

BLAST of MELO3C024018.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q08109\|HRD1_YEAST	4.7e-06	40.38	ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (st...	[more]
sp\|Q9UKV5\|AMFR_HUMAN	5.2e-05	25.26	E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2	[more]
sp\|Q9R049\|AMFR_MOUSE	5.2e-05	25.26	E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2	[more]
sp\|Q8GXF8\|SHGR9_ARATH	5.2e-05	39.22	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9VE61\|RN181_DROME	6.8e-05	39.44	E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN...	[more]

BLAST of MELO3C024018.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LER3\|A0A0A0LER3_CUCSA	1.0e-13	52.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1	[more]
tr\|A0A1S3CR16\|A0A1S3CR16_CUCME	4.3e-12	55.74	E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A1S3B605\|A0A1S3B605_CUCME	2.1e-11	56.52	RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1	[more]
tr\|A0A0A0LHI3\|A0A0A0LHI3_CUCSA	1.4e-10	57.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1	[more]
tr\|A0A0A0L3Z2\|A0A0A0L3Z2_CUCSA	5.2e-10	51.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019786	Zinc_finger_PHD-type_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C024018.2	MELO3C024018.2	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024018.2.1.five_prime_UTR.1	MELO3C024018.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024018.2.1.exon.1	MELO3C024018.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024018.2.1.CDS.1	MELO3C024018.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C024018.2.1	MELO3C024018.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 81..127 e-value: 6.3E-6 score: 35.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 80..128 e-value: 4.3E-12 score: 46.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 81..128 score: 12.519
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 52..133 e-value: 4.9E-16 score: 60.2
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 57..129
None	No IPR available	PANTHER	PTHR14155:SF430	GH10160P	coord: 57..129
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 80..132
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 81..127