MELO3C024018.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C024018.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionE3 ubiquitin-protein ligase
Locationchr04 : 23591727 .. 23592283 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATAATATTTATTCCATAAAATAAACGATTTCCTATTCAGAAACTAAATTGCCATTCTAATTCCATTATAAATCTAAATTTAGATTCATAACTTCCTTCCTTCATTCTCTTCATCCCATTCATAATTCCTAATTAATTCCCAATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGAAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAG

mRNA sequence

TAATAATATTTATTCCATAAAATAAACGATTTCCTATTCAGAAACTAAATTGCCATTCTAATTCCATTATAAATCTAAATTTAGATTCATAACTTCCTTCCTTCATTCTCTTCATCCCATTCATAATTCCTAATTAATTCCCAATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGAAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAG

Coding sequence (CDS)

ATGTCTAACCCCATACGCTTCACTCGCCGCCGCCACATCGCCAGGCACGATCGATCGCTCCAAAACCGATCGAGGCTTCGGGGCCATCCCTTCCCCCCACTACCACCCAACGAACTTCTTCCGTACGATGTCATCCATCCATTTAGGCGCCGCGTTCTGAGGGACGAGAGAGTGATTCCAGAAGAAGATCCAGCGAGCGAGGAAGTTGATGGGTATGAGGAAGAAGAGTTGGAGGGAGATTGTTGTATTTGTTGGGAAGAACTGAATGAAGAACCGAATGAAAAAGGGAAGAAGGAGGTGTGTAGAGTCAAGTGCGGCCATGTGTATCATAAGTCTTGTATACTCGCTTGGGTTCGAAGAAATCTTTCTTGTCCTTTGTGTAGAAGAAAAATAGAATTATGCAATGTAGATTAG

Protein sequence

MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKIELCNVD
Homology
[Close]
BLAST of MELO3C024018.2 vs. NCBI nr
Match: KGN58546.1 (hypothetical protein Csa_3G680620 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60

Query: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKKE 100
           EEDPA              SE+ DG  E E  GDCCIC EELN    EK KKE
Sbjct: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN--GGEKKKKE 106

[Close]
BLAST of MELO3C024018.2 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 67  EEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPL 126
           +E DG  EEE EGDC +C E L      KG++EV R+ CGHVYHK CIL W++ + SCPL
Sbjct: 163 QEFDGLREEEEEGDCSVCCEAL------KGEEEVSRIPCGHVYHKCCILKWLQMSNSCPL 222

Query: 127 CRRKIE 133
           CR K+E
Sbjct: 223 CRTKLE 222

[Close]
BLAST of MELO3C024018.2 vs. NCBI nr
Match: XP_008466247.1 (PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 6.4e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 70  DGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRR 129
           DG   EE+   CC+C+E+LN E  E+ ++EV R+ CGHVYHK CIL W+  N SCPLCRR
Sbjct: 156 DGNGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

Query: 130 K 131
           +
Sbjct: 216 E 216

[Close]
BLAST of MELO3C024018.2 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 67  EEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPL 126
           E+ DG+  E+L G+C +C++E+ +     G +EV R+ CGHVYHKSC+L W++RN SCPL
Sbjct: 180 EKFDGFGGEDL-GNCSVCYDEMKD-----GGEEVSRIPCGHVYHKSCVLTWLQRNNSCPL 239

Query: 127 CRRKIE 133
           CR+K+E
Sbjct: 240 CRKKLE 239

[Close]
BLAST of MELO3C024018.2 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 67  EEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPL 126
           ++ DG  EEE EGDC +C E L      KG++EV R+ CGHVYHK CIL W++ + SCPL
Sbjct: 163 QKFDGLREEEEEGDCSVCCEAL------KGEEEVSRIPCGHVYHKFCILKWLQMSNSCPL 222

Query: 127 CRRKIE 133
           CR K+E
Sbjct: 223 CRTKLE 222

[Close]
BLAST of MELO3C024018.2 vs. TAIR10
Match: AT5G05910.1 (RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 0 

Query: 76  ELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKI 132
           ++E  C IC E+L +  N+  K  VC  KC H +H +CI +W+R +  CP+CR  +
Sbjct: 87  DVELCCPICLEDLKKVDNDDDKVVVCLSKCNHSFHMNCIFSWLRESQDCPICRSTV 142

[Close]
BLAST of MELO3C024018.2 vs. TAIR10
Match: AT5G41440.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 74  EEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKIEL 133
           EE  EG C IC EE      + G + +C  KC HV+H+ C+L+W+  N +CP+CR     
Sbjct: 71  EEGDEGCCSICLEEF-----KIGHELMCIKKCRHVFHRFCMLSWIDANRNCPICR----- 124

Query: 134 CNVD 138
           C+VD
Sbjct: 131 CSVD 124

[Close]
BLAST of MELO3C024018.2 vs. TAIR10
Match: AT4G05350.1 (RING/U-box superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-08
Identity = 22/51 (43.14%), Postives = 31/51 (60.78%), Query Frame = 0 

Query: 81  CCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKI 132
           C IC E L   P     ++V R+ C HV+H  C+L W++R  +CPLCR +I
Sbjct: 157 CSICLESLVSGPK---PRDVTRMTCSHVFHNGCLLEWLKRKNTCPLCRTEI 204

[Close]
BLAST of MELO3C024018.2 vs. TAIR10
Match: AT4G12190.1 (RING/U-box superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 0 

Query: 81  CCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRRKI 132
           C IC E L   P     +++ R+ C HV+H  C+L W++R  +CPLCR ++
Sbjct: 22  CSICLESLVSGPK---PRDITRMTCSHVFHNGCLLEWLKRKNTCPLCRTEL 69

[Close]
BLAST of MELO3C024018.2 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0 

Query: 58  VIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAW 117
           +I +ED   E+V           C IC EE   E  E+GK+    +KC H+YH SCI++W
Sbjct: 126 IITDEDLVKEKV-----------CAICKEEF--EVGEEGKE----LKCLHLYHSSCIVSW 184

Query: 118 VRRNLSCPLCRRKIEL 134
           +  + +CP+CR ++ L
Sbjct: 186 LNIHNTCPICRFEVNL 184

[Close]
BLAST of MELO3C024018.2 vs. Swiss-Prot
Match: sp|Q08109|HRD1_YEAST (ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRD1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.7e-06
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 81  CCICWEELNEEPNEK----GKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129
           C IC +EL   PN++      K+  R+ CGH+ H SC+  W+ R+ +CP+CR
Sbjct: 349 CIICMDELIHSPNQQTWKNKNKKPKRLPCGHILHLSCLKNWMERSQTCPICR 400

[Close]
BLAST of MELO3C024018.2 vs. Swiss-Prot
Match: sp|Q9UKV5|AMFR_HUMAN (E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 24/95 (25.26%), Postives = 45/95 (47.37%), Query Frame = 0 

Query: 44  VIHPFRRRVLRDE---RVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEV 103
           + H  +RR+ R +   RV+   +         E      DC ICW+ +         +  
Sbjct: 301 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSM---------QAA 360

Query: 104 CRVKCGHVYHKSCILAWVRRNLSCPLCRRKIELCN 136
            ++ CGH++H SC+ +W+ ++ SCP CR  + + +
Sbjct: 361 RKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386

[Close]
BLAST of MELO3C024018.2 vs. Swiss-Prot
Match: sp|Q9R049|AMFR_MOUSE (E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 24/95 (25.26%), Postives = 45/95 (47.37%), Query Frame = 0 

Query: 44  VIHPFRRRVLRDE---RVIPEEDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEV 103
           + H  +RR+ R +   RV+   +         E      DC ICW+ +         +  
Sbjct: 301 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSM---------QAA 360

Query: 104 CRVKCGHVYHKSCILAWVRRNLSCPLCRRKIELCN 136
            ++ CGH++H SC+ +W+ ++ SCP CR  + + +
Sbjct: 361 RKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386

[Close]
BLAST of MELO3C024018.2 vs. Swiss-Prot
Match: sp|Q8GXF8|SHGR9_ARATH (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 20/51 (39.22%), Postives = 30/51 (58.82%), Query Frame = 0 

Query: 78  EGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129
           E +C IC EE++E       ++VC + C H +H  CIL W+ +  +CP CR
Sbjct: 211 EVECVICKEEMSE------GRDVCEMPCQHFFHWKCILPWLSKKNTCPFCR 255

[Close]
BLAST of MELO3C024018.2 vs. Swiss-Prot
Match: sp|Q9VE61|RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 62  EDPASEEVDGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRN 121
           E P  E V   E  +LE  C +C     +EP E+G+K    + C H +H+ CIL W+++ 
Sbjct: 53  ELPVHEIVKSDEGGDLE--CSVC-----KEPAEEGQKYRI-LPCKHEFHEECILLWLKKT 112

Query: 122 LSCPLCRRKIE 133
            SCPLCR ++E
Sbjct: 113 NSCPLCRYELE 115

[Close]
BLAST of MELO3C024018.2 vs. TrEMBL
Match: tr|A0A0A0LER3|A0A0A0LER3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60

Query: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKKE 100
           EEDPA              SE+ DG  E E  GDCCIC EELN    EK KKE
Sbjct: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN--GGEKKKKE 106

[Close]
BLAST of MELO3C024018.2 vs. TrEMBL
Match: tr|A0A1S3CR16|A0A1S3CR16_CUCME (E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC103503717 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 70  DGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCRR 129
           DG   EE+   CC+C+E+LN E  E+ ++EV R+ CGHVYHK CIL W+  N SCPLCRR
Sbjct: 156 DGNGREEMGDQCCVCYEDLNCEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCRR 215

Query: 130 K 131
           +
Sbjct: 216 E 216

[Close]
BLAST of MELO3C024018.2 vs. TrEMBL
Match: tr|A0A1S3B605|A0A1S3B605_CUCME (RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 67  EEVDGY--EEEELEGDCCICWEELNEEPNEKGK-KEVCRVKCGHVYHKSCILAWVRRNLS 126
           ++ DG+  EEEE  GDC +C+EEL      KGK KEV R+ CGHVYHKSC+L W++ N S
Sbjct: 101 QKFDGFNKEEEEEIGDCSVCYEEL------KGKGKEVSRIPCGHVYHKSCVLTWLQINNS 160

Query: 127 CPLCRRKIE 133
           CPLCR  +E
Sbjct: 161 CPLCRAPLE 163

[Close]
BLAST of MELO3C024018.2 vs. TrEMBL
Match: tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 70  DGYEEEELEGDCCICWEELNEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNLSCPLCR 129
           DG   E + G CC+C+E+LN E  E+ K+E  R+ CGHVYHKSCIL W+  N SCPLCR
Sbjct: 154 DGNGGEGMGGQCCVCYEDLNCE-REEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCR 211

[Close]
BLAST of MELO3C024018.2 vs. TrEMBL
Match: tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 67  EEVDGYEEEELEGD--CCICWEEL--NEEPNEKGKKEVCRVKCGHVYHKSCILAWVRRNL 126
           E+ DG   EE EGD  C +C+E+L    E      KEV R+ CGH+YHKSCIL W++ + 
Sbjct: 161 EKYDGNGGEEKEGDDQCSVCYEQLYGKRENEXXXXKEVSRIPCGHMYHKSCILKWLKISN 220

Query: 127 SCPLCRRKIE 133
           SCPLCRR++E
Sbjct: 221 SCPLCRRELE 230

The following BLAST results are available for this feature:
BLAST of MELO3C024018.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58546.11.5e-1352.21hypothetical protein Csa_3G680620 [Cucumis sativus][more]
XP_022947933.13.8e-1256.06E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ... [more]
XP_008466247.16.4e-1255.74PREDICTED: E3 ubiquitin-protein ligase synoviolin B-like [Cucumis melo][more]
XP_023539471.11.1e-1151.52uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo][more]
XP_023006826.11.4e-1154.55E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima][more]
BLAST of MELO3C024018.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G05910.11.8e-0839.29RING/U-box superfamily protein[more]
AT5G41440.16.9e-0842.19RING/U-box superfamily protein[more]
AT4G05350.19.0e-0843.14RING/U-box superfamily protein[more]
AT4G12190.12.0e-0739.22RING/U-box superfamily protein[more]
AT1G68180.12.6e-0736.84RING/U-box superfamily protein[more]
BLAST of MELO3C024018.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q08109|HRD1_YEAST4.7e-0640.38ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Saccharomyces cerevisiae (st... [more]
sp|Q9UKV5|AMFR_HUMAN5.2e-0525.26E3 ubiquitin-protein ligase AMFR OS=Homo sapiens OX=9606 GN=AMFR PE=1 SV=2[more]
sp|Q9R049|AMFR_MOUSE5.2e-0525.26E3 ubiquitin-protein ligase AMFR OS=Mus musculus OX=10090 GN=Amfr PE=1 SV=2[more]
sp|Q8GXF8|SHGR9_ARATH5.2e-0539.22E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q9VE61|RN181_DROME6.8e-0539.44E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN... [more]
BLAST of MELO3C024018.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LER3|A0A0A0LER3_CUCSA1.0e-1352.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1[more]
tr|A0A1S3CR16|A0A1S3CR16_CUCME4.3e-1255.74E3 ubiquitin-protein ligase synoviolin B-like OS=Cucumis melo OX=3656 GN=LOC1035... [more]
tr|A0A1S3B605|A0A1S3B605_CUCME2.1e-1156.52RING finger protein 165-like OS=Cucumis melo OX=3656 GN=LOC103486202 PE=4 SV=1[more]
tr|A0A0A0LHI3|A0A0A0LHI3_CUCSA1.4e-1057.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889100 PE=4 SV=1[more]
tr|A0A0A0L3Z2|A0A0A0L3Z2_CUCSA5.2e-1051.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G551140 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019786Zinc_finger_PHD-type_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024018.2.1MELO3C024018.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 81..127
e-value: 6.3E-6
score: 35.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 80..128
e-value: 4.3E-12
score: 46.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 81..128
score: 12.519
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 52..133
e-value: 4.9E-16
score: 60.2
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 57..129
NoneNo IPR availablePANTHERPTHR14155:SF430GH10160Pcoord: 57..129
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 80..132
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 81..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024018.2Csa3G680620Cucumber (Chinese Long) v2cumedB193
MELO3C024018.2CSPI03G29310Wild cucumber (PI 183967)cpimedB193
MELO3C024018.2CsGy3G027170Cucumber (Gy14) v2cgybmedB173
MELO3C024018.2CsaV3_3G031730Cucumber (Chinese Long) v3cucmedB198
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024018.2Cucumber (Gy14) v2cgybmedB485
MELO3C024018.2Cucumber (Gy14) v1cgymedB203
MELO3C024018.2Cucumber (Gy14) v1cgymedB342
MELO3C024018.2Cucurbita maxima (Rimu)cmamedB257
MELO3C024018.2Cucurbita maxima (Rimu)cmamedB387
MELO3C024018.2Cucurbita maxima (Rimu)cmamedB489
MELO3C024018.2Cucurbita maxima (Rimu)cmamedB943
MELO3C024018.2Cucurbita moschata (Rifu)cmomedB239
MELO3C024018.2Cucurbita moschata (Rifu)cmomedB374
MELO3C024018.2Cucurbita moschata (Rifu)cmomedB476
MELO3C024018.2Cucurbita moschata (Rifu)cmomedB932
MELO3C024018.2Cucurbita pepo (Zucchini)cpemedB160
MELO3C024018.2Cucurbita pepo (Zucchini)cpemedB360
MELO3C024018.2Cucurbita pepo (Zucchini)cpemedB615
MELO3C024018.2Cucurbita pepo (Zucchini)cpemedB673
MELO3C024018.2Wild cucumber (PI 183967)cpimedB544
MELO3C024018.2Cucumber (Chinese Long) v2cumedB528
MELO3C024018.2Melon (DHL92) v3.6.1medmedB084
MELO3C024018.2Bottle gourd (USVL1VR-Ls)lsimedB221
MELO3C024018.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C024018.2Watermelon (Charleston Gray)medwcgB308
MELO3C024018.2Watermelon (Charleston Gray)medwcgB309
MELO3C024018.2Watermelon (97103) v1medwmB343
MELO3C024018.2Watermelon (97103) v1medwmB344
MELO3C024018.2Silver-seed gourdcarmedB0460
MELO3C024018.2Silver-seed gourdcarmedB0770
MELO3C024018.2Silver-seed gourdcarmedB0822
MELO3C024018.2Cucumber (Chinese Long) v3cucmedB556
MELO3C024018.2Watermelon (97103) v2medwmbB305
MELO3C024018.2Watermelon (97103) v2medwmbB357
MELO3C024018.2Wax gourdmedwgoB375
MELO3C024018.2Wax gourdmedwgoB443