MELO3C023352T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C023352T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr11 : 1885805 .. 1885972 (-)
Sequence length168
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACGAGGACGAGAGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGATAATAAACGAGTGGTCTCAGTGGCGCGACGTCCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACGAGGACGAGAGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGATAATAAACGAGTGGTCTCAGTGGCGCGACGTCCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACGAGGACGAGAGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGATAATAAACGAGTGGTCTCAGTGGCGCGACGTCCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRNA*
Homology
[Close]
BLAST of MELO3C023352T1 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.7e-18
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLR 54
           MTYC DV+DEDE DSTYATTT SEDIQYIE  NEWSQWRD LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]
BLAST of MELO3C023352T1 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-18
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRNA 56
           MTYC+DVDD DE D  YATTTT E+I YIE+ NEWSQWRD LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]
BLAST of MELO3C023352T1 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-18
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLR 54
           MTYC DV+DEDE DSTYATTT SEDIQYIE  NEWSQWRD LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]
BLAST of MELO3C023352T1 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRN 55
           +TY  ++DDED+ DST+ATT+  +DI YIE  NEW++WRD LA SMFT+WQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTS-GDDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

[Close]
BLAST of MELO3C023352T1 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-10
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLR 54
           MT  ED+ D +E DS YATTTT ++IQYIE  NEW+QW+D L+++MF +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

[Close]
BLAST of MELO3C023352T1 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-10
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRN 55
           MT  +  D+ DE DST+ATT  ++DI YIE  NEWSQWRD LAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:
BLAST of MELO3C023352T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.7e-1883.02Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C023352T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|6.3e-1880.00PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|8.2e-1883.02retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659086609|ref|XP_008444024.1|1.1e-1162.96PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|1.7e-1060.38PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|6.3e-1064.81PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023352MELO3C023352gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023352T1MELO3C023352T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023352T1.cds1MELO3C023352T1.cds1CDS