MELO3C023352 (gene) Melon (DHL92) v3.5.1

NameMELO3C023352
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr11 : 1885805 .. 1885972 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGAGGACGTTGACGACGAGGACGAGAGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGATAATAAACGAGTGGTCTCAGTGGCGCGACGTCCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACGAGGACGAGAGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGATAATAAACGAGTGGTCTCAGTGGCGCGACGTCCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACGAGGACGAGAGGGACTCCACGTACGCGACGACCACCACTTCAGAAGACATTCAGTACATTGAGATAATAAACGAGTGGTCTCAGTGGCGCGACGTCCTAGCCGAATCGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRNA*
BLAST of MELO3C023352 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.7e-18
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLR 54
           MTYC DV+DEDE DSTYATTT SEDIQYIE  NEWSQWRD LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C023352 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-18
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRNA 56
           MTYC+DVDD DE D  YATTTT E+I YIE+ NEWSQWRD LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

BLAST of MELO3C023352 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-18
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLR 54
           MTYC DV+DEDE DSTYATTT SEDIQYIE  NEWSQWRD LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

BLAST of MELO3C023352 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRN 55
           +TY  ++DDED+ DST+ATT+  +DI YIE  NEW++WRD LA SMFT+WQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTS-GDDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

BLAST of MELO3C023352 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-10
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLR 54
           MT  ED+ D +E DS YATTTT ++IQYIE  NEW+QW+D L+++MF +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

BLAST of MELO3C023352 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-10
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1

Query: 1   MTYCEDVDDEDERDSTYATTTTSEDIQYIEIINEWSQWRDVLAESMFTDWQLRN 55
           MT  +  D+ DE DST+ATT  ++DI YIE  NEWSQWRD LAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHATTA-ADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.7e-1883.02Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|6.3e-1880.00PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|8.2e-1883.02retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659086609|ref|XP_008444024.1|1.1e-1162.96PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|1.7e-1060.38PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|6.3e-1064.81PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023352T1MELO3C023352T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023352Melon (DHL92) v3.5.1memeB042
MELO3C023352Cucumber (Gy14) v1cgymeB148
MELO3C023352Cucumber (Gy14) v1cgymeB611
MELO3C023352Cucurbita maxima (Rimu)cmameB503
MELO3C023352Cucurbita maxima (Rimu)cmameB549
MELO3C023352Cucurbita moschata (Rifu)cmomeB538
MELO3C023352Cucurbita moschata (Rifu)cmomeB495
MELO3C023352Wild cucumber (PI 183967)cpimeB090
MELO3C023352Wild cucumber (PI 183967)cpimeB267
MELO3C023352Wild cucumber (PI 183967)cpimeB518
MELO3C023352Cucumber (Chinese Long) v2cumeB092
MELO3C023352Cucumber (Chinese Long) v2cumeB513
MELO3C023352Watermelon (Charleston Gray)mewcgB081
MELO3C023352Watermelon (Charleston Gray)mewcgB111
MELO3C023352Watermelon (Charleston Gray)mewcgB125
MELO3C023352Watermelon (97103) v1mewmB129
MELO3C023352Watermelon (97103) v1mewmB134
MELO3C023352Cucurbita pepo (Zucchini)cpemeB210
MELO3C023352Cucurbita pepo (Zucchini)cpemeB248
MELO3C023352Bottle gourd (USVL1VR-Ls)lsimeB086
MELO3C023352Cucurbita pepo (Zucchini)cpemeB656
MELO3C023352Bottle gourd (USVL1VR-Ls)lsimeB045
MELO3C023352Cucumber (Gy14) v2cgybmeB078
MELO3C023352Cucumber (Gy14) v2cgybmeB451
MELO3C023352Silver-seed gourdcarmeB0320
MELO3C023352Silver-seed gourdcarmeB0438
MELO3C023352Silver-seed gourdcarmeB0818
MELO3C023352Cucumber (Chinese Long) v3cucmeB097
MELO3C023352Cucumber (Chinese Long) v3cucmeB273
MELO3C023352Cucumber (Chinese Long) v3cucmeB530
MELO3C023352Watermelon (97103) v2mewmbB089
MELO3C023352Watermelon (97103) v2mewmbB113
MELO3C023352Wax gourdmewgoB130