MELO3C023330T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C023330T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag-pro-like protein
Locationchr11 : 1618364 .. 1619293 (-)
Sequence length930
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTACACAGAGCTTTTGCCTCAACTTTTAAAGAGTCATCAAGTGGCTATCGTACCACAAGAGCCTCTGCAACCACCATATCCTAAGTGGTATGACCCTAATGCAAGATGTGAATATCATGCTGGGACAGTTGGGCATTCTATAGAGAATTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTTAAAGCCGGTTGGTTGAAATTCAAGAAGACAGGAGAAGAGCTTGATGTCAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTCGACACATTCACGGAAAGAAATAAGAATATGGTGAGCGGCGTAACTACTTCAATGAATACGCTTTTCCAAATCCTCCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGATGGAGAGAAGATTGGATGCGTCAACAAGGAGGAGTGTTTATTTTACCTAGAGACAAATGACCATTCCATTGAGGATTGTTGTGAGTTCAAGAATTGGGTGCAAAAGCTGATGGATGCAAAGATTCTCTTGGTAGGACAGATAAGCATGCAGGAAATCGAAGTTAATATGATTACTGATACTTCATCTACTAAGAAAACTTCAAATGAGACAACATCTATATGGAAACCATTAGTCATTCATTATGAAGAGAAGCCAAGTATTATGTCTTATATCCAAAAACCTAAAGCAATGACAATTGAAATACCAAGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAATTCATCACGAACAATGTTGTTTCTACAACAGTTGAAGGATTAACTCGTAGTGGAAGGTGTTATACACTAGCTAATTTAAAAGATGTCTCGAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGGTGAAGATGATCTAAATGATCTGAGTTAA

mRNA sequence

ATGTCGTACACAGAGCTTTTGCCTCAACTTTTAAAGAGTCATCAAGTGGCTATCGTACCACAAGAGCCTCTGCAACCACCATATCCTAAGTGGTATGACCCTAATGCAAGATGTGAATATCATGCTGGGACAGTTGGGCATTCTATAGAGAATTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTTAAAGCCGGTTGGTTGAAATTCAAGAAGACAGGAGAAGAGCTTGATGTCAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTCGACACATTCACGGAAAGAAATAAGAATATGGTGAGCGGCGTAACTACTTCAATGAATACGCTTTTCCAAATCCTCCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGATGGAGAGAAGATTGGATGCGTCAACAAGGAGGAGTGTTTATTTTACCTAGAGACAAATGACCATTCCATTGAGGATTGTTGTGAGTTCAAGAATTGGGTGCAAAAGCTGATGGATGCAAAGATTCTCTTGGTAGGACAGATAAGCATGCAGGAAATCGAAGTTAATATGATTACTGATACTTCATCTACTAAGAAAACTTCAAATGAGACAACATCTATATGGAAACCATTAGTCATTCATTATGAAGAGAAGCCAAGTATTATGTCTTATATCCAAAAACCTAAAGCAATGACAATTGAAATACCAAGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAATTCATCACGAACAATGTTGTTTCTACAACAGTTGAAGGATTAACTCGTAGTGGAAGGTGTTATACACTAGCTAATTTAAAAGATGTCTCGAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGGTGAAGATGATCTAAATGATCTGAGTTAA

Coding sequence (CDS)

ATGTCGTACACAGAGCTTTTGCCTCAACTTTTAAAGAGTCATCAAGTGGCTATCGTACCACAAGAGCCTCTGCAACCACCATATCCTAAGTGGTATGACCCTAATGCAAGATGTGAATATCATGCTGGGACAGTTGGGCATTCTATAGAGAATTGTTTTCCTTTGAAAGCTAAAGTGCAAAGTCTAGTTAAAGCCGGTTGGTTGAAATTCAAGAAGACAGGAGAAGAGCTTGATGTCAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATGTTGTCGACACATTCACGGAAAGAAATAAGAATATGGTGAGCGGCGTAACTACTTCAATGAATACGCTTTTCCAAATCCTCCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGATGGAGAGAAGATTGGATGCGTCAACAAGGAGGAGTGTTTATTTTACCTAGAGACAAATGACCATTCCATTGAGGATTGTTGTGAGTTCAAGAATTGGGTGCAAAAGCTGATGGATGCAAAGATTCTCTTGGTAGGACAGATAAGCATGCAGGAAATCGAAGTTAATATGATTACTGATACTTCATCTACTAAGAAAACTTCAAATGAGACAACATCTATATGGAAACCATTAGTCATTCATTATGAAGAGAAGCCAAGTATTATGTCTTATATCCAAAAACCTAAAGCAATGACAATTGAAATACCAAGTCCTTTTGCTTATAAGGATAACCATGTCGTTCCATGGAAGTATGAATGTCAATTCATCACGAACAATGTTGTTTCTACAACAGTTGAAGGATTAACTCGTAGTGGAAGGTGTTATACACTAGCTAATTTAAAAGATGTCTCGAAAGAGGATGAAGTTCGACGACGTAAAGGCAAAGCTATAGAAATGGCAGGTGAAGATGATCTAAATGATCTGAGTTAA

Protein sequence

MSYTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSLVKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKNMVSGVTTSMNTLFQILHGAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQISMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYKDNHVVPWKYECQFITNNVVSTTVEGLTRSGRCYTLANLKDVSKEDEVRRRKGKAIEMAGEDDLNDLS*
Homology
[Close]
BLAST of MELO3C023330T1 vs. TrEMBL
Match: A0A061ELG5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_020601 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.0e-47
Identity = 114/290 (39.31%), Postives = 163/290 (56.21%), Query Frame = 1 

Query: 3   YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
           YT LLPQL+++  +A  P EPL+PP+PKWYDPNA C+YH G  GHS ENC  LK KVQ+L
Sbjct: 355 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTTLKHKVQAL 414

Query: 63  VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
           +KAG L F K  +   V+ NPLPNH    +N + +    R K  +  + T M+ +F+ L 
Sbjct: 415 IKAGLLNFAKK-DNSSVDGNPLPNHGRSTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 474

Query: 123 GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
               ++P     D E++G      C F++    HSI++C  F+  +Q+LMD+ ++     
Sbjct: 475 KINAITP--EPIDTEELGHDLAYSCKFHMGAIGHSIQNCDSFRRKLQELMDSSVIEF--- 534

Query: 183 SMQEIEVNMI----TDTSSTKKTSNETTSIWKPLVIHYEEKPSIMS---YIQKPKAMTIE 242
             +E+E N++     DT +   +S+   +  KPL I YEE  S M+          +TIE
Sbjct: 535 -YEEVEENLVGTINGDTPTEVASSSFKGNKPKPLTIFYEENRSPMNDTFPTMIRSGITIE 594

Query: 243 IPSPFAYKDNHVVPWKYECQFITNNVVS--------TTVEGLTRSGRCYT 277
           +PSPF YK +  VPW YEC  +     S        T+V G+TRSGRCY+
Sbjct: 595 VPSPFPYKSDKAVPWNYECNILGTASSSPQASLEDLTSVGGITRSGRCYS 637

[Close]
BLAST of MELO3C023330T1 vs. TrEMBL
Match: A0A061EXR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.2e-46
Identity = 117/311 (37.62%), Postives = 166/311 (53.38%), Query Frame = 1 

Query: 3    YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
            YT LLPQL++   +   P EPL+PP+PKWYDPNA C+YH G  GHS ENC  LK KVQ+L
Sbjct: 1059 YTTLLPQLIEKRLLTQTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 1118

Query: 63   VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
            +KAG L F K  +   V+ NPL NH  P +N + +    R K  +  + T M+ +F+ L 
Sbjct: 1119 IKAGLLNFTKK-DSSSVDGNPLLNHGRPTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 1178

Query: 123  GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
                ++P     D +++G      C F++    HSI++C  F+  +Q+LMD+ I+   + 
Sbjct: 1179 KINAITP--EPIDTKELGHDLAYSCKFHMGAIGHSIQNCDGFRRKLQELMDSSIIEFYEG 1238

Query: 183  SMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIM---SYIQKPKAMTIEIPSP 242
            + + +   +  DT +   +S+   +  KPL I YEE  S M   S       +TIE+PSP
Sbjct: 1239 AEENLVGTIYGDTPAEVASSSFGANKPKPLTIFYEENKSPMNDTSPTMIRNGITIEVPSP 1298

Query: 243  FAYKDNHVVPWKYECQFITNNVVS--------TTVEGLTRSGRCYTLANLKDVSKEDEVR 302
            F YK++  VPW YEC  +     +        T V G+TRSGRCY        S E   R
Sbjct: 1299 FPYKNDKAVPWNYECNILGTASSAPQASFEDITGVGGITRSGRCY--------SPEVAER 1358

[Close]
BLAST of MELO3C023330T1 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.0e-44
Identity = 126/318 (39.62%), Postives = 166/318 (52.20%), Query Frame = 1 

Query: 3   YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
           Y EL  QL+ +H VA +  EPL+PP+P+WYD +A C+YH G  GHSIENC   K KVQ L
Sbjct: 456 YAELFTQLVANHLVAPLYIEPLKPPFPRWYDTSAHCDYHYGIEGHSIENCTAFKHKVQGL 515

Query: 63  VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV--DTFTERNKNMVSGVTTSMNTLFQIL 122
           +KAG L F+K  E+ +VN NPLPNH G  +N +  + + +RN   +  V TSM  +F+ L
Sbjct: 516 IKAGILNFEKKPEQ-NVNNNPLPNHAGAGVNAIEREVYVKRN---IREVETSMEKVFEAL 575

Query: 123 HGAGYLS-----PRFNND-DGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMD-A 182
             A  L      P  N+  D +++ C+  + C+       HSI+ C  F+  VQ++MD +
Sbjct: 576 VKADMLKVWPECPNVNDSRDIQRLCCLYHKGCV------GHSIQGCSSFRKEVQRMMDES 635

Query: 183 KILLVGQISMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTI 242
           KI    + S  E  VNMI+      K S     I KPL I YE K  ++      K M I
Sbjct: 636 KIEFYTEAS--ESAVNMIS------KESTHPMKI-KPLTIFYEPKGELVEDKNHAK-MVI 695

Query: 243 EIPSPFAYKDNHVVPWKYECQFITNNVVS------------TTVEGLTRSGRCYT----- 294
           E+P PF YKDN  VPW Y C    +                T V G+TRSGRCY+     
Sbjct: 696 EVPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITGVGGITRSGRCYSPEAFE 753

[Close]
BLAST of MELO3C023330T1 vs. TrEMBL
Match: A0A061DPM2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003960 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 115/315 (36.51%), Postives = 164/315 (52.06%), Query Frame = 1 

Query: 3    YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
            YT LLPQL+++  +A  P EPL+P +PKWYDPNA C+YH G  GHS ENC  LK KVQ L
Sbjct: 965  YTTLLPQLIENRLLARTPLEPLRPSFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQVL 1024

Query: 63   VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
            +KAG L F K  +   V+ NPLPNH  P +N + +      K  +  + T M+ +F+ L 
Sbjct: 1025 IKAGLLNFTKK-DSSGVDGNPLPNHGRPTVNAIHEGMIRMVKKGIDEIQTPMDKVFEALS 1084

Query: 123  GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
                ++P     D +++G      C F++    HSI++   F+  +Q+LMD+ ++   + 
Sbjct: 1085 KINAVTP--EPIDTKELGHDLTYSCKFHMGAIGHSIQNYDGFRRKLQELMDSSVIEFYEG 1144

Query: 183  SMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIM---SYIQKPKAMTIEIPSP 242
            + + +   +  DT +   +S+   +  KPL I YEE  S M   S       +TIE+PSP
Sbjct: 1145 AEENLVGTINGDTPAEMASSSFGANKPKPLTIFYEENRSPMNDTSPTMIRSGITIEVPSP 1204

Query: 243  FAYKDNHVVPWKYECQFITNNVVS--------TTVEGLTRSGRCYTLANLKDVSKEDEVR 302
            F YK +  VPW YEC  +     +        T V  +TRSGRCY+           EV 
Sbjct: 1205 FPYKSDKAVPWNYECNILGTASSAPQASFEDLTGVGDITRSGRCYS----------PEVA 1264

Query: 303  RRKGKAIEMAGEDDL 306
             R GK     GE  L
Sbjct: 1265 ERVGKGKPAQGEGGL 1266

[Close]
BLAST of MELO3C023330T1 vs. TrEMBL
Match: A0A061E2I6_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Theobroma cacao GN=TCM_007834 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.5e-40
Identity = 111/319 (34.80%), Postives = 161/319 (50.47%), Query Frame = 1 

Query: 3   YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
           YT LLPQL+++  +A  P EPL+PP+PKWYDPNA C+YH G  GHS ENC  LK KVQ+L
Sbjct: 368 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 427

Query: 63  VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
           +KAG L F K  +  +V+ NPLPNH  P +N + +    R K  +  +   M+ +F+ L 
Sbjct: 428 IKAGLLNFAKK-DSSNVDGNPLPNHGRPTVNAIHEGMIRRVKKGIDEIQMPMDKVFEALS 487

Query: 123 GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
               ++P     D +++G      C F++    HSI++C  F++                
Sbjct: 488 KINAITP--EPIDTKELGHDLTYSCKFHMGAIGHSIQNCDGFRH---------------- 547

Query: 183 SMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIM---SYIQKPKAMTIEIPSP 242
                       T +   +S+   +  KPL I YEE  S M   S       +TIE+PSP
Sbjct: 548 ------------TPAEVASSSFGANKPKPLTIFYEENKSPMNDTSPTMIRNGITIEVPSP 607

Query: 243 FAYKDNHVVPWKYECQFITNNVVS---------TTVEGLTRSGRCYTLANLKDVSKEDEV 302
           F YK +  VPW Y+C  I+    S         T V G+TRSGRCY+   ++ V K    
Sbjct: 608 FPYKSDKAVPWNYQCN-ISGTASSAPQASFEDLTGVGGITRSGRCYSPEVVERVGKGKPA 654

Query: 303 RRRKG-KAIEMAGEDDLND 308
           +   G K  +   +D +++
Sbjct: 668 QEEGGLKKADTFSKDQVDE 654

[Close]
BLAST of MELO3C023330T1 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 620.2 bits (1598), Expect = 2.0e-174
Identity = 298/304 (98.03%), Postives = 302/304 (99.34%), Query Frame = 1 

Query: 3   YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
           YT+LLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL
Sbjct: 321 YTKLLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 380

Query: 63  VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKNMVSGVTTSMNTLFQILHG 122
           VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKNMVSGVTTSMNTLFQILHG
Sbjct: 381 VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKNMVSGVTTSMNTLFQILHG 440

Query: 123 AGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQIS 182
           AGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQIS
Sbjct: 441 AGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQIS 500

Query: 183 MQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYK 242
           MQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYK
Sbjct: 501 MQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYK 560

Query: 243 DNHVVPWKYECQFITNNVVSTTVEGLTRSGRCYTLANLKDVSKEDEVRRRKGKAIEMAGE 302
           DNHVVPWKYECQFITNNVVSTTVEGLTRSGRCYTLANLKDVSKEDEVRRRKGKAIEMA E
Sbjct: 561 DNHVVPWKYECQFITNNVVSTTVEGLTRSGRCYTLANLKDVSKEDEVRRRKGKAIEMAVE 620

Query: 303 DDLN 307
            +++
Sbjct: 621 KEID 624

[Close]
BLAST of MELO3C023330T1 vs. NCBI nr
Match: gi|590658018|ref|XP_007034730.1| (Gag-pro-like protein [Theobroma cacao])

HSP 1 Score: 196.4 bits (498), Expect = 7.2e-47
Identity = 114/290 (39.31%), Postives = 163/290 (56.21%), Query Frame = 1 

Query: 3   YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
           YT LLPQL+++  +A  P EPL+PP+PKWYDPNA C+YH G  GHS ENC  LK KVQ+L
Sbjct: 355 YTTLLPQLIENRLLARTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTTLKHKVQAL 414

Query: 63  VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
           +KAG L F K  +   V+ NPLPNH    +N + +    R K  +  + T M+ +F+ L 
Sbjct: 415 IKAGLLNFAKK-DNSSVDGNPLPNHGRSTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 474

Query: 123 GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
               ++P     D E++G      C F++    HSI++C  F+  +Q+LMD+ ++     
Sbjct: 475 KINAITP--EPIDTEELGHDLAYSCKFHMGAIGHSIQNCDSFRRKLQELMDSSVIEF--- 534

Query: 183 SMQEIEVNMI----TDTSSTKKTSNETTSIWKPLVIHYEEKPSIMS---YIQKPKAMTIE 242
             +E+E N++     DT +   +S+   +  KPL I YEE  S M+          +TIE
Sbjct: 535 -YEEVEENLVGTINGDTPTEVASSSFKGNKPKPLTIFYEENRSPMNDTFPTMIRSGITIE 594

Query: 243 IPSPFAYKDNHVVPWKYECQFITNNVVS--------TTVEGLTRSGRCYT 277
           +PSPF YK +  VPW YEC  +     S        T+V G+TRSGRCY+
Sbjct: 595 VPSPFPYKSDKAVPWNYECNILGTASSSPQASLEDLTSVGGITRSGRCYS 637

[Close]
BLAST of MELO3C023330T1 vs. NCBI nr
Match: gi|590636870|ref|XP_007028966.1| (Uncharacterized protein TCM_024883 [Theobroma cacao])

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 117/311 (37.62%), Postives = 166/311 (53.38%), Query Frame = 1 

Query: 3    YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
            YT LLPQL++   +   P EPL+PP+PKWYDPNA C+YH G  GHS ENC  LK KVQ+L
Sbjct: 1059 YTTLLPQLIEKRLLTQTPLEPLRPPFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQAL 1118

Query: 63   VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
            +KAG L F K  +   V+ NPL NH  P +N + +    R K  +  + T M+ +F+ L 
Sbjct: 1119 IKAGLLNFTKK-DSSSVDGNPLLNHGRPTVNAIHEGMIRRVKKGIDEIQTPMDKVFEALS 1178

Query: 123  GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
                ++P     D +++G      C F++    HSI++C  F+  +Q+LMD+ I+   + 
Sbjct: 1179 KINAITP--EPIDTKELGHDLAYSCKFHMGAIGHSIQNCDGFRRKLQELMDSSIIEFYEG 1238

Query: 183  SMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIM---SYIQKPKAMTIEIPSP 242
            + + +   +  DT +   +S+   +  KPL I YEE  S M   S       +TIE+PSP
Sbjct: 1239 AEENLVGTIYGDTPAEVASSSFGANKPKPLTIFYEENKSPMNDTSPTMIRNGITIEVPSP 1298

Query: 243  FAYKDNHVVPWKYECQFITNNVVS--------TTVEGLTRSGRCYTLANLKDVSKEDEVR 302
            F YK++  VPW YEC  +     +        T V G+TRSGRCY        S E   R
Sbjct: 1299 FPYKNDKAVPWNYECNILGTASSAPQASFEDITGVGGITRSGRCY--------SPEVAER 1358

[Close]
BLAST of MELO3C023330T1 vs. NCBI nr
Match: gi|590695072|ref|XP_007044788.1| (Uncharacterized protein TCM_010507 [Theobroma cacao])

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 126/318 (39.62%), Postives = 166/318 (52.20%), Query Frame = 1 

Query: 3   YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
           Y EL  QL+ +H VA +  EPL+PP+P+WYD +A C+YH G  GHSIENC   K KVQ L
Sbjct: 456 YAELFTQLVANHLVAPLYIEPLKPPFPRWYDTSAHCDYHYGIEGHSIENCTAFKHKVQGL 515

Query: 63  VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV--DTFTERNKNMVSGVTTSMNTLFQIL 122
           +KAG L F+K  E+ +VN NPLPNH G  +N +  + + +RN   +  V TSM  +F+ L
Sbjct: 516 IKAGILNFEKKPEQ-NVNNNPLPNHAGAGVNAIEREVYVKRN---IREVETSMEKVFEAL 575

Query: 123 HGAGYLS-----PRFNND-DGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMD-A 182
             A  L      P  N+  D +++ C+  + C+       HSI+ C  F+  VQ++MD +
Sbjct: 576 VKADMLKVWPECPNVNDSRDIQRLCCLYHKGCV------GHSIQGCSSFRKEVQRMMDES 635

Query: 183 KILLVGQISMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPKAMTI 242
           KI    + S  E  VNMI+      K S     I KPL I YE K  ++      K M I
Sbjct: 636 KIEFYTEAS--ESAVNMIS------KESTHPMKI-KPLTIFYEPKGELVEDKNHAK-MVI 695

Query: 243 EIPSPFAYKDNHVVPWKYECQFITNNVVS------------TTVEGLTRSGRCYT----- 294
           E+P PF YKDN  VPW Y C    +                T V G+TRSGRCY+     
Sbjct: 696 EVPKPFPYKDNKAVPWNYNCNVQVSEAKKWIAESQDDAANITGVGGITRSGRCYSPEAFE 753

[Close]
BLAST of MELO3C023330T1 vs. NCBI nr
Match: gi|590715508|ref|XP_007050215.1| (Uncharacterized protein TCM_003960 [Theobroma cacao])

HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43
Identity = 115/315 (36.51%), Postives = 164/315 (52.06%), Query Frame = 1 

Query: 3    YTELLPQLLKSHQVAIVPQEPLQPPYPKWYDPNARCEYHAGTVGHSIENCFPLKAKVQSL 62
            YT LLPQL+++  +A  P EPL+P +PKWYDPNA C+YH G  GHS ENC  LK KVQ L
Sbjct: 965  YTTLLPQLIENRLLARTPLEPLRPSFPKWYDPNAHCDYHFGIQGHSTENCTALKHKVQVL 1024

Query: 63   VKAGWLKFKKTGEELDVNQNPLPNHEGPAINVV-DTFTERNKNMVSGVTTSMNTLFQILH 122
            +KAG L F K  +   V+ NPLPNH  P +N + +      K  +  + T M+ +F+ L 
Sbjct: 1025 IKAGLLNFTKK-DSSGVDGNPLPNHGRPTVNAIHEGMIRMVKKGIDEIQTPMDKVFEALS 1084

Query: 123  GAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLVGQI 182
                ++P     D +++G      C F++    HSI++   F+  +Q+LMD+ ++   + 
Sbjct: 1085 KINAVTP--EPIDTKELGHDLTYSCKFHMGAIGHSIQNYDGFRRKLQELMDSSVIEFYEG 1144

Query: 183  SMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIM---SYIQKPKAMTIEIPSP 242
            + + +   +  DT +   +S+   +  KPL I YEE  S M   S       +TIE+PSP
Sbjct: 1145 AEENLVGTINGDTPAEMASSSFGANKPKPLTIFYEENRSPMNDTSPTMIRSGITIEVPSP 1204

Query: 243  FAYKDNHVVPWKYECQFITNNVVS--------TTVEGLTRSGRCYTLANLKDVSKEDEVR 302
            F YK +  VPW YEC  +     +        T V  +TRSGRCY+           EV 
Sbjct: 1205 FPYKSDKAVPWNYECNILGTASSAPQASFEDLTGVGDITRSGRCYS----------PEVA 1264

Query: 303  RRKGKAIEMAGEDDL 306
             R GK     GE  L
Sbjct: 1265 ERVGKGKPAQGEGGL 1266

The following BLAST results are available for this feature:
BLAST of MELO3C023330T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061ELG5_THECC5.0e-4739.31Gag-pro-like protein OS=Theobroma cacao GN=TCM_020601 PE=4 SV=1[more]
A0A061EXR3_THECC7.2e-4637.62Uncharacterized protein OS=Theobroma cacao GN=TCM_024883 PE=4 SV=1[more]
A0A061E6J4_THECC1.0e-4439.62Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1[more]
A0A061DPM2_THECC2.0e-4336.51Uncharacterized protein OS=Theobroma cacao GN=TCM_003960 PE=4 SV=1[more]
A0A061E2I6_THECC4.5e-4034.80RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
BLAST of MELO3C023330T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122237|ref|XP_008461036.1|2.0e-17498.03PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
gi|590658018|ref|XP_007034730.1|7.2e-4739.31Gag-pro-like protein [Theobroma cacao][more]
gi|590636870|ref|XP_007028966.1|1.0e-4537.62Uncharacterized protein TCM_024883 [Theobroma cacao][more]
gi|590695072|ref|XP_007044788.1|1.5e-4439.62Uncharacterized protein TCM_010507 [Theobroma cacao][more]
gi|590715508|ref|XP_007050215.1|2.8e-4336.51Uncharacterized protein TCM_003960 [Theobroma cacao][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023330MELO3C023330gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023330T1MELO3C023330T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023330T1.cds1MELO3C023330T1.cds1CDS