MELO3C023292.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023292.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein RADIALIS-like 2
Location	chr11 : 995710 .. 998100 (+)
Sequence length	602

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGTACCTCTCGGCCTTCATTTTTTCTTTTTCTAAGTTTTAACCTTTCGAAATATTACATATTTCTCAACTACTAAACTACATTTTTAAAGCTTTTTTACGACAAAAAAAGTCCAACCTCTAAGTCGCTTTCAACTCACTTTTATTTTGGTTCGCTTTCGAGATTCTCTCTTCATATGTATCTCTGCATAGTTTTTAATCTTTTTGATCTTCTCATCTCCACAATGTTTCTTTTTTTTCTTTTCTTCTTGAAATTCCTTAGAGCTTCCTTTTAATGCCTTACAAAAAGCTATACATCTTTTTTATCACCTCCATGTCCTTCCCCTCTCTCATGTGACTTTCCTATGTATTTTCAAGTTTTTCTTTTTTATTTCTTAACCAAACTATAATATAAACAAACCCAATTAAAAAGAATCAAATTGATTAGAGTTTTTATTTCAAAATTAAAAAACAATACAAGTTGCATCGAGTTTTCCTACCTATCTCCTTCAATCACGTAGCAAAAAAAAAGAAACACGAAAAATTGTTATCTCGTAACAATGGATTGAGCTACACAAAGATAAGTAGGTCGGACCTTTACTCTATTTATAATATTTTAATTAAAGAAAAGGGTATTTGAAAGTTGGTTTTTTTTCGAGGATAATGGGTTCCAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTCTTTTTATATAAAAATAAAAGGAAAAAAAGTCAACAGTTTACGAGAAACCCAGCCTCGTGCCGGTCACGTGCCTTGCTCCTACAAATAGGGCTGATTAATTAATTAATACCAATAATTGCATTCTTAATATTATAATTAACCCTCATAATTTATGTATTAATTATTGGCGTTATCTAATCTTATAACTTAATTATTTTTTTAATGTTGATATTTTGTTTTCCTGACAAATATCCAACTTGTCGGATTGTATTCTAACAATCCCCATTACTCCACAAAAACAATACACATCTTCTTTTTTCTTTTTTCTTTTTTTCTTTTTTCTTTCCATTTTTGGGAGCTTTTTATTCTTTAATCAAAACAAAAAAAATAATTCACCCAAACTTTCAAATTAAGAAATATTTTCTCCCAAAAAAATTTTTAGAAGTTAAAAAAAAATGAAAAATGAATAAAATTTATATATAAAAAGAAAAAAGGTATAGCCAAGAACTTATAATGAAAATCCATATGAGTAACTGAGGAGTCTAATCTATAGCAAATTAAAAGAAAAGAAATATGATCTTAATTTAAATAATTGAGATCTTATTTGATACGATTTTATTTCTAATTTTTTTAGTTTTCGTTCACTGTTTATTGTTTTCATTTCATAAACTAAAAGAAAAAGAAAAGAAAAAGTCATTGTCTTGATTTAAATCACTAAGGTCCTTTTTTTTTATGACGTACATCCCTTTGATTATATTTATGTATAAATAAGAATAATGATCTTTTTGTCGTGTTTGCTTGTCCTTCTTGTACTATTAGCCCTCCAAGTAATTTTTAAAAGATATAAAAAATATCTACTTTGGTCTTTGAATTTGAAAAATATATCTATTTTAGTTATTACAATTATTTTATTGTCAAATGTTACTCATTCTTTATCTATTTAGCGTATGGAAATATCACTGCATATTTGAAGTCATGTCATCATTTGTCAAATAATTGAGATTGAAGCAATGTTAGAGATCAAAATAGTTATGGTTGAATATGAAAATTAAATTAAGGTTTTGAAAATTGCAATCATGGGCCTAACTCATTTCATTTTTGCAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCATCCACTAATTTCCCC

mRNA sequence

ACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGGATGGGATTAAGAAGAATGAAAAAGTGGATAGGTGGTTGCTGTTTTTGCGCCTAAGATAACAAAAAAGGAATTAATGTAGCCAAATTTGCAATTTATGTGTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGTAGAAGAATCAATTTGATTTATGTTTCTTCCATCCACTAATTTCCCC

Coding sequence (CDS)

ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAA

Protein sequence

MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH

Homology

[Close]

BLAST of MELO3C023292.2.1 vs. NCBI nr
Match: XP_008460938.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 110

[Close]

BLAST of MELO3C023292.2.1 vs. NCBI nr
Match: XP_004148844.1 (PREDICTED: transcription factor RADIALIS-like [Cucumis sativus] >KGN61794.1 MYB transcription factor MYB142 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 3.7e-34
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTS                     RMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTS----SSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of MELO3C023292.2.1 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 9.4e-30
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTS 82
           LVEDVKHIESG VPFP Y+S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSS 78

[Close]

BLAST of MELO3C023292.2.1 vs. NCBI nr
Match: XP_022986646.1 (protein RADIALIS-like 2 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTS 82
           LVEDVKHIE G VPFP Y+S
Sbjct: 61 LLVEDVKHIEFGHVPFPNYSS 78

[Close]

BLAST of MELO3C023292.2.1 vs. NCBI nr
Match: XP_022944318.1 (protein RADIALIS-like 2 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMASSHR---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTS 82
           LVEDVKHIESG VPFP Y+S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSS 78

[Close]

BLAST of MELO3C023292.2.1 vs. TAIR10
Match: AT2G21650.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 3.9e-22
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1  MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 RLVEDVKHIESGRVPFPKY 80
           LV D++ IE+G VPFP Y
Sbjct: 61 LLVRDIESIENGHVPFPDY 76

[Close]

BLAST of MELO3C023292.2.1 vs. TAIR10
Match: AT1G75250.1 (RAD-like 6)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-21
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE+GRVP P Y
Sbjct: 62 LINIETGRVPLPNY 74

[Close]

BLAST of MELO3C023292.2.1 vs. TAIR10
Match: AT1G19510.1 (RAD-like 5)

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-21
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE   VP PKY
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]

BLAST of MELO3C023292.2.1 vs. TAIR10
Match: AT4G39250.1 (RAD-like 1)

HSP 1 Score: 97.1 bits (240), Expect = 7.4e-21
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65 DVKHIESGRVPFPKY 80
          D+  IE+G VPFP Y
Sbjct: 63 DINSIENGHVPFPNY 76

[Close]

BLAST of MELO3C023292.2.1 vs. TAIR10
Match: AT2G18328.1 (RAD-like 4)

HSP 1 Score: 88.2 bits (217), Expect = 3.4e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 7  SSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDV 66
          +S   ++SSWT  ++K FE ALA FDKDTPDRW  +A AV GGK+ +EVKRH++ L+ DV
Sbjct: 2  ASSSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAV-GGKSTEEVKRHYELLLRDV 61

Query: 67 KHIESGRVPFPKY 80
            IESGR P P+Y
Sbjct: 62 NDIESGRYPQPRY 73

[Close]

BLAST of MELO3C023292.2.1 vs. Swiss-Prot
Match: sp|Q58FS3|RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-21
Identity = 45/64 (70.31%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 16 WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVP 75
          W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VP
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVP 70

Query: 76 FPKY 80
          FP Y
Sbjct: 71 FPNY 73

[Close]

BLAST of MELO3C023292.2.1 vs. Swiss-Prot
Match: sp|Q9SIJ5|RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-21
Identity = 53/79 (67.09%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1  MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 RLVEDVKHIESGRVPFPKY 80
           LV D++ IE+G VPFP Y
Sbjct: 61 LLVRDIESIENGHVPFPDY 76

[Close]

BLAST of MELO3C023292.2.1 vs. Swiss-Prot
Match: sp|Q1A173|RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-20
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE+GRVP P Y
Sbjct: 62 LINIETGRVPLPNY 74

[Close]

BLAST of MELO3C023292.2.1 vs. Swiss-Prot
Match: sp|Q8GW75|RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.6e-20
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE   VP PKY
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]

BLAST of MELO3C023292.2.1 vs. Swiss-Prot
Match: sp|F4JVB8|RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65 DVKHIESGRVPFPKY 80
          D+  IE+G VPFP Y
Sbjct: 63 DINSIENGHVPFPNY 76

[Close]

BLAST of MELO3C023292.2.1 vs. TrEMBL
Match: tr|A0A1S3CDK8|A0A1S3CDK8_CUCME (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.8e-41
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 110

[Close]

BLAST of MELO3C023292.2.1 vs. TrEMBL
Match: tr|A0A0A0LL58|A0A0A0LL58_CUCSA (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-34
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSXXXXXXXXXXXXXXXXXXXXXRMRNMKLH 111
           RLVEDVKHIESGRVPFPKYTS                     RMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTS----SSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of MELO3C023292.2.1 vs. TrEMBL
Match: tr|A0A1S2Y7F5|A0A1S2Y7F5_CICAR (protein RADIALIS-like 3 OS=Cicer arietinum OX=3827 GN=LOC101499379 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  SAS SW+  +NKAFERALAVFDKDTPDRW NVA+AVGGGKT DEVKRH++ L+ D
Sbjct: 2  ASSSMSASGSWSTKENKAFERALAVFDKDTPDRWSNVAHAVGGGKTADEVKRHYEHLLRD 61

Query: 66 VKHIESGRVPFPKY 80
          V+HIESG+VPFPKY
Sbjct: 62 VRHIESGQVPFPKY 75

[Close]

BLAST of MELO3C023292.2.1 vs. TrEMBL
Match: tr|A0A2P4KGL3|A0A2P4KGL3_QUESU (Transcription factor radialis OS=Quercus suber OX=58331 GN=CFP56_47155 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-24
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+S SWT  +NKAFERALAV+DKDTPDRW NVA AV GGKTP+EVKRH++ LVED
Sbjct: 2  ASSSMSSSDSWTAKENKAFERALAVYDKDTPDRWHNVAKAV-GGKTPEEVKRHYELLVED 61

Query: 66 VKHIESGRVPFPKY 80
          VKHIESGRVPFPKY
Sbjct: 62 VKHIESGRVPFPKY 74

[Close]

BLAST of MELO3C023292.2.1 vs. TrEMBL
Match: tr|A0A2N9HQL9|A0A2N9HQL9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41932 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  +NKAFERALAV+DKDTPDRW NVA AV GGKTP+EVKRH++ LVE
Sbjct: 3  SSSLSSQSSDSWTAKENKAFERALAVYDKDTPDRWHNVAKAV-GGKTPEEVKRHYELLVE 62

Query: 65 DVKHIESGRVPFPKY 80
          DVKHIESGRVPFPKY
Sbjct: 63 DVKHIESGRVPFPKY 76

The following BLAST results are available for this feature:

BLAST of MELO3C023292.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460938.1	1.2e-40	100.00	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
XP_004148844.1	3.7e-34	75.45	PREDICTED: transcription factor RADIALIS-like [Cucumis sativus] >KGN61794.1 MYB ...	[more]
XP_023513343.1	9.4e-30	85.19	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022986646.1	1.0e-28	82.72	protein RADIALIS-like 2 [Cucurbita maxima]	[more]
XP_022944318.1	1.8e-28	82.72	protein RADIALIS-like 2 [Cucurbita moschata]	[more]

BLAST of MELO3C023292.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21650.1	3.9e-22	67.09	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.0e-21	67.57	RAD-like 6	[more]
AT1G19510.1	2.5e-21	67.57	RAD-like 5	[more]
AT4G39250.1	7.4e-21	61.33	RAD-like 1	[more]
AT2G18328.1	3.4e-18	57.53	RAD-like 4	[more]

BLAST of MELO3C023292.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q58FS3\|RAD_ANTMA	3.2e-21	70.31	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
sp\|Q9SIJ5\|RADL2_ARATH	7.1e-21	67.09	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
sp\|Q1A173\|RADL6_ARATH	3.5e-20	67.57	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
sp\|Q8GW75\|RADL5_ARATH	4.6e-20	67.57	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
sp\|F4JVB8\|RADL1_ARATH	1.3e-19	61.33	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]

BLAST of MELO3C023292.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CDK8\|A0A1S3CDK8_CUCME	7.8e-41	100.00	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
tr\|A0A0A0LL58\|A0A0A0LL58_CUCSA	2.4e-34	75.45	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
tr\|A0A1S2Y7F5\|A0A1S2Y7F5_CICAR	2.3e-24	75.68	protein RADIALIS-like 3 OS=Cicer arietinum OX=3827 GN=LOC101499379 PE=4 SV=1	[more]
tr\|A0A2P4KGL3\|A0A2P4KGL3_QUESU	8.7e-24	78.38	Transcription factor radialis OS=Quercus suber OX=58331 GN=CFP56_47155 PE=4 SV=1	[more]
tr\|A0A2N9HQL9\|A0A2N9HQL9_FAGSY	1.1e-23	77.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41932 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023292.2	MELO3C023292.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C023292.2.1	MELO3C023292.2.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023292.2.1.exon.1	MELO3C023292.2.1.exon.1	exon
MELO3C023292.2.1.exon.2	MELO3C023292.2.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023292.2.1.five_prime_UTR.1	MELO3C023292.2.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023292.2.1.CDS.1	MELO3C023292.2.1.CDS.1	CDS
MELO3C023292.2.1.CDS.2	MELO3C023292.2.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023292.2.1.three_prime_UTR.1	MELO3C023292.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 4.6E-4 score: 29.5
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 7..76 e-value: 1.6E-20 score: 74.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..110
None	No IPR available	PANTHER	PTHR43952	FAMILY NOT NAMED	coord: 6..109
None	No IPR available	PANTHER	PTHR43952:SF14	PROTEIN RADIALIS-LIKE 1-RELATED	coord: 6..109
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 14..71