MELO3C023121T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C023121T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAsc-type amino acid transporter 1
Locationchr8 : 15057587 .. 15057889 (-)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACAAATCCTCAAGCCTCCCTACAATCCCAAGAATCCAAACCCATAAAATCCAAATCGCCACGTCCCATCACTGACCTGACCACCACTTCCTCGCCCAGGCATGAATCTAATAAGGATCTTGCCCTTATTTTGATTGAGTCAACTGGAACCTCCTTATCGCGTCAAGAGGAAACTCCTCAACCTTTTGATGCAATCCCTCCCAACCAAACCAAATCACCTAGCCCTGAAACTTTGAATTACAATGTCTTCCACGAAACCTCCTCTGACCCAGCAACATTGTTGGATAATGCGACTTAG

mRNA sequence

ATGCCAACAAATCCTCAAGCCTCCCTACAATCCCAAGAATCCAAACCCATAAAATCCAAATCGCCACGTCCCATCACTGACCTGACCACCACTTCCTCGCCCAGGCATGAATCTAATAAGGATCTTGCCCTTATTTTGATTGAGTCAACTGGAACCTCCTTATCGCGTCAAGAGGAAACTCCTCAACCTTTTGATGCAATCCCTCCCAACCAAACCAAATCACCTAGCCCTGAAACTTTGAATTACAATGTCTTCCACGAAACCTCCTCTGACCCAGCAACATTGTTGGATAATGCGACTTAG

Coding sequence (CDS)

ATGCCAACAAATCCTCAAGCCTCCCTACAATCCCAAGAATCCAAACCCATAAAATCCAAATCGCCACGTCCCATCACTGACCTGACCACCACTTCCTCGCCCAGGCATGAATCTAATAAGGATCTTGCCCTTATTTTGATTGAGTCAACTGGAACCTCCTTATCGCGTCAAGAGGAAACTCCTCAACCTTTTGATGCAATCCCTCCCAACCAAACCAAATCACCTAGCCCTGAAACTTTGAATTACAATGTCTTCCACGAAACCTCCTCTGACCCAGCAACATTGTTGGATAATGCGACTTAG

Protein sequence

MPTNPQASLQSQESKPIKSKSPRPITDLTTTSSPRHESNKDLALILIESTGTSLSRQEETPQPFDAIPPNQTKSPSPETLNYNVFHETSSDPATLLDNAT*
Homology
[Close]
BLAST of MELO3C023121T1 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.3e-27
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 1   MPTNPQASLQSQESKPIKSKSPRPITDLTTTSSPRHESNKDLALILIESTGTSLSRQEET 60
           MPT  + S QSQ+SKP KSKSP PI  LTTTSSP+H++NK   LIL    GTSL  QEET
Sbjct: 1   MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET 60

Query: 61  PQPFDAIPPNQTKSPSPETLNYNVFHETSSDPATLLDNAT 101
           PQP DAIP NQ K PSPET N +VFHET   P TLLD+AT
Sbjct: 61  PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDAT 100

[Close]
BLAST of MELO3C023121T1 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 66/100 (66.00%), Postives = 73/100 (73.00%), Query Frame = 1 

Query: 1   MPTNPQASLQSQESKPIKSKSPRPITDLTTTSSPRHESNKDLALILIESTGTSLSRQEET 60
           MPT  + S QSQ+SKP KSKSP PI  LTTTSSP+H++NK   LIL    GTSL  QEET
Sbjct: 1   MPTTSRVSPQSQKSKPTKSKSPPPIEKLTTTSSPKHKTNKKCVLILFYLAGTSLPCQEET 60

Query: 61  PQPFDAIPPNQTKSPSPETLNYNVFHETSSDPATLLDNAT 101
           PQP DAIP NQ K PSPET N +VFHET   P TLLD+AT
Sbjct: 61  PQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDAT 100

The following BLAST results are available for this feature:
BLAST of MELO3C023121T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCD9_CUCME9.3e-2766.00Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C023121T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136315|gb|ADN34138.1|1.3e-2666.00hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023121MELO3C023121gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023121T1MELO3C023121T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023121T1.cds1MELO3C023121T1.cds1CDS