MELO3C023097T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C023097T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionFerric reductase transmembrane component 4
Locationchr8 : 14574062 .. 14574469 (+)
Sequence length408
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGGAAAAAGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATCACCCATCTTCTTCTTCTAATTCTGCATCCTCACCTATGAATTCAGATCAATATGCAATGGATTTAGAGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGACTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTTAGCCAATCTTATCCGTCCTTCTGGCGGAGTTGTTCAAATGAGGCCTCCTACCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGATTTGTGCCAAGACCCAAAATCAAATCTTATTTTCAAAAGCCTATCGTCGTTTATGATCCTATCATATAA

mRNA sequence

ATGAGTTCGGAAAAAGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATCACCCATCTTCTTCTTCTAATTCTGCATCCTCACCTATGAATTCAGATCAATATGCAATGGATTTAGAGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGACTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTTAGCCAATCTTATCCGTCCTTCTGGCGGAGTTGTTCAAATGAGGCCTCCTACCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGATTTGTGCCAAGACCCAAAATCAAATCTTATTTTCAAAAGCCTATCGTCGTTTATGATCCTATCATATAA

Coding sequence (CDS)

ATGAGTTCGGAAAAAGGAAGTGCTAGAGGAAGAACAAACTCTACCTCTTCAAAGGGCAATCACCCATCTTCTTCTTCTAATTCTGCATCCTCACCTATGAATTCAGATCAATATGCAATGGATTTAGAGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGACTGGGTCTCCCACGGAGTCATCAACTCCACCTAGGCCTTTAGCCAATCTTATCCGTCCTTCTGGCGGAGTTGTTCAAATGAGGCCTCCTACCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTGTCACCCCCGATAAACGATTTGTGCCAAGACCCAAAATCAAATCTTATTTTCAAAAGCCTATCGTCGTTTATGATCCTATCATATAA

Protein sequence

MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTGSPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKIKSYFQKPIVVYDPII*
Homology
[Close]
BLAST of MELO3C023097T1 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.4e-56
Identity = 115/135 (85.19%), Postives = 120/135 (88.89%), Query Frame = 1 

Query: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60
           MSSEKGSARGRTNSTSSKG+ PSSSSNS  SPM++ QY MDL FT VTRSRSR SSI  G
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120
           SPTESSTPPRP  NLIRPSGGV+QMRPP SPSSNRESSTPPTTYSQAVT DKRFVPRP+I
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPII 136
           KSYFQK IVVYDPII
Sbjct: 121 KSYFQKSIVVYDPII 135

[Close]
BLAST of MELO3C023097T1 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-31
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60
           MS E+GS RGR NS SS+GNHPSS SN A SPM++DQYAM+L FTTVT SR+RSS I+ G
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  -SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYS 106
            + TESSTPPRP  NLIRPSG V+Q RP  S  SNR+SS PPTTYS
Sbjct: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]
BLAST of MELO3C023097T1 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-58
Identity = 119/135 (88.15%), Postives = 122/135 (90.37%), Query Frame = 1 

Query: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60
           MSSEKGSARGRTNSTSSKGN PSSSSN A SPM++DQYAMDLEFTT+TRSRSRSS IR G
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120
           SPTESSTPPRP ANLIR S GVVQMRP  SPSSNRESSTPPTTYS  VTPDKRFVPRPKI
Sbjct: 61  SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYSHTVTPDKRFVPRPKI 120

Query: 121 KSYFQKPIVVYDPII 136
           KSYFQK IVVYDPII
Sbjct: 121 KSYFQKSIVVYDPII 135

[Close]
BLAST of MELO3C023097T1 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 225.3 bits (573), Expect = 6.3e-56
Identity = 115/135 (85.19%), Postives = 120/135 (88.89%), Query Frame = 1 

Query: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60
           MSSEKGSARGRTNSTSSKG+ PSSSSNS  SPM++ QY MDL FT VTRSRSR SSI  G
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYSQAVTPDKRFVPRPKI 120
           SPTESSTPPRP  NLIRPSGGV+QMRPP SPSSNRESSTPPTTYSQAVT DKRFVPRP+I
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 KSYFQKPIVVYDPII 136
           KSYFQK IVVYDPII
Sbjct: 121 KSYFQKSIVVYDPII 135

[Close]
BLAST of MELO3C023097T1 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-31
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1   MSSEKGSARGRTNSTSSKGNHPSSSSNSASSPMNSDQYAMDLEFTTVTRSRSRSSSIRTG 60
           MS E+GS RGR NS SS+GNHPSS SN A SPM++DQYAM+L FTTVT SR+RSS I+ G
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  -SPTESSTPPRPLANLIRPSGGVVQMRPPTSPSSNRESSTPPTTYS 106
            + TESSTPPRP  NLIRPSG V+Q RP  S  SNR+SS PPTTYS
Sbjct: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C023097T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME4.4e-5685.19Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA4.9e-3169.81Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C023097T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098578|ref|XP_008450208.1|1.4e-5888.15PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|307136323|gb|ADN34145.1|6.3e-5685.19hypothetical protein [Cucumis melo subsp. melo][more]
gi|700189415|gb|KGN44648.1|7.0e-3169.81hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023097MELO3C023097gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023097T1MELO3C023097T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023097T1.cds1MELO3C023097T1.cds1CDS