MELO3C022940T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C022940T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHomeobox protein Hox-B6
Locationchr10 : 24886611 .. 24886778 (-)
Sequence length168
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

mRNA sequence

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

Coding sequence (CDS)

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

Protein sequence

MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN*
Homology
[Close]
BLAST of MELO3C022940T1 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 1   MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA 55
           MS ED+MD RP RS+ CR  SS SKRKR  Q ++TM V   AM+ ANDQL+ IA
Sbjct: 213 MSPEDIMDTRPSRSSECRTGSSRSKRKRRGQDVETMEVTCSAMEYANDQLKAIA 266

The following BLAST results are available for this feature:
BLAST of MELO3C022940T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708415|ref|XP_004148199.2|2.2e-0759.26PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C022940MELO3C022940gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C022940T1MELO3C022940T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C022940T1.cds1MELO3C022940T1.cds1CDS