MELO3C022940 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C022940
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHomeobox protein Hox-B6
Locationchr10 : 24886611 .. 24886778 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

mRNA sequence

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

Coding sequence (CDS)

ATGTCAGCCGAAGACATGATGGACGCACGACCTGTGAGGTCTAATAGCTGTAGGGCGAGTTCTAGTGGATCAAAGAGGAAGCGTGGAAGACAGACTATCAAGACTATGGTCGTCATTCGCGATGCCATGGATTGTGCGAATGACCAGCTTAGGGTCATTGCGAACTAG

Protein sequence

MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIAN*
Homology
[Close]
BLAST of MELO3C022940 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 1   MSAEDMMDARPVRSNSCRASSSGSKRKRGRQTIKTMVVIRDAMDCANDQLRVIA 55
           MS ED+MD RP RS+ CR  SS SKRKR  Q ++TM V   AM+ ANDQL+ IA
Sbjct: 213 MSPEDIMDTRPSRSSECRTGSSRSKRKRRGQDVETMEVTCSAMEYANDQLKAIA 266

The following BLAST results are available for this feature:
BLAST of MELO3C022940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778708415|ref|XP_004148199.2|2.2e-0759.26PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022940T1MELO3C022940T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C022940Cucumber (Chinese Long) v3cucmeB388
MELO3C022940Watermelon (97103) v2mewmbB050
MELO3C022940Watermelon (97103) v2mewmbB052
MELO3C022940Wax gourdmewgoB065
MELO3C022940Wax gourdmewgoB088
MELO3C022940Cucumber (Gy14) v1cgymeB330
MELO3C022940Cucurbita maxima (Rimu)cmameB646
MELO3C022940Cucurbita moschata (Rifu)cmomeB639
MELO3C022940Wild cucumber (PI 183967)cpimeB376
MELO3C022940Cucumber (Chinese Long) v2cumeB381
MELO3C022940Watermelon (Charleston Gray)mewcgB046
MELO3C022940Watermelon (Charleston Gray)mewcgB050
MELO3C022940Watermelon (97103) v1mewmB073
MELO3C022940Watermelon (97103) v1mewmB080
MELO3C022940Cucurbita pepo (Zucchini)cpemeB371
MELO3C022940Cucumber (Gy14) v2cgybmeB325
MELO3C022940Bottle gourd (USVL1VR-Ls)lsimeB082