MELO3C021996T1 (mRNA) Melon (DHL92) v3.5.1

NameMELO3C021996T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMutator-like transposase
Locationchr9 : 2058143 .. 2058718 (-)
Sequence length270
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACTGATCGTTCTATTCCTAAAGAGATTATGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAATCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACATAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCTAGGTATGATCAGTTTTTTATATATAAACGATCGTTTAATATTGTTTAGATATTAAACGATCATTTATAAACGATATTAGATATTAGTGTTGTATATGTAAACGGTCGCTTAATATTGTTTATGTATAGTAAGAAGATCGCTTAAAGATATATAAACGATCGCTTAAAGATATATAAACGATCGCTTAAATATATATAAATGATCGCTTAACTAATATAAACGATCGCTTAACTAACATAAACAATCGCTTAACTAATATAAACGATTGTTTGTTTGTGCTAATAGAAATATGTTTTTAATTATTATAGGTACATGCACTGTTTTAGAAATGGATGATAGTGGTAATTTCAAGTTATGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGA

mRNA sequence

ATGTCTACTGATCGTTCTATTCCTAAAGAGATTATGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAATCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACATAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCTAGGTACATGCACTGTTTTAGAAATGGATGATAGTGGTAATTTCAAGTTATGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGA

Coding sequence (CDS)

ATGTCTACTGATCGTTCTATTCCTAAAGAGATTATGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAATCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACATAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCTAGGTACATGCACTGTTTTAGAAATGGATGATAGTGGTAATTTCAAGTTATGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGA

Protein sequence

MSTDRSIPKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTVLEMDDSGNFKLCFMAFGASIEG*
BLAST of MELO3C021996T1 vs. TrEMBL
Match: Q9ZUM3_ARATH (Mutator-like transposase OS=Arabidopsis thaliana GN=At2g02190 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+++   R + GV I+Y K+WR +EH  ++  G   +S+ ++PR+F ++  +N G+ T 
Sbjct: 277 PKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPRWFHRVQVTNPGSITF 336

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
            + D +  FK  F+AFGASI G
Sbjct: 337 FKKDSANKFKYAFLAFGASIRG 358

BLAST of MELO3C021996T1 vs. TrEMBL
Match: Q9SKM2_ARATH (Mutator-like transposase OS=Arabidopsis thaliana GN=At2g15150 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+++   R + GV I+Y K+WR +EH  ++  G   +S+ ++PR+F ++  +N G+ T 
Sbjct: 154 PKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPRWFHRVQVTNPGSITF 213

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
            + D +  FK  F+AFGASI G
Sbjct: 214 FKKDSANKFKYAFLAFGASIRG 235

BLAST of MELO3C021996T1 vs. TrEMBL
Match: Q9SI31_ARATH (Mutator-like transposase OS=Arabidopsis thaliana GN=At2g04950 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+++   R + GV I+Y K+WR +EH  ++  G   +S+ ++PR+F ++  +N G+ T 
Sbjct: 154 PKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPRWFHRVQVTNPGSITF 213

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
            + D +  FK  F+AFGASI G
Sbjct: 214 FKKDSANKFKYAFLAFGASIRG 235

BLAST of MELO3C021996T1 vs. TrEMBL
Match: U5D175_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p00001680 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           P++I  + +   GV ++Y K+WR+KEH  + L G   ESY L+P F   L ++N GT   
Sbjct: 214 PQDIRGEMKHKYGVRMNYMKAWRSKEHAQEELRGKANESYRLLPGFLHMLQKTNPGTIVH 273

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E +D  +FK  F+A  ASI+G
Sbjct: 274 METEDDNSFKYLFVALDASIKG 295

BLAST of MELO3C021996T1 vs. TrEMBL
Match: W1PUP6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00070750 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PKEIM     N GV I Y ++ R KE  +KILHG   ++Y ++P +  KL++ N GT   
Sbjct: 381 PKEIMKDIHRNYGVQIGYSQARRGKELAMKILHGSYDDAYHILPSYCQKLIDKNPGTIAN 440

Query: 68  LEMD-DSGNFKLCFMAFGASIEG 90
           +E+D +  +FK  F+AF A+I G
Sbjct: 441 IEVDKEDKSFKRLFVAFHATISG 463

BLAST of MELO3C021996T1 vs. NCBI nr
Match: gi|659102873|ref|XP_008452360.1| (PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-18
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1

Query: 2   STDRSIPKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESN 61
           S DRS P +IM   RT LGVN+SY K+WRAKE ++  L+G+  ESYALIP F  KL E N
Sbjct: 95  SFDRSTPNDIMIHMRTKLGVNVSYYKAWRAKELLMNSLNGEAKESYALIPNFCMKLKEIN 154

Query: 62  LGTCTVLEMDDSGNFKLCFMAFGASIEG 90
            G+ T  E D  G+FK CFMA GA IEG
Sbjct: 155 PGSFTAYETDTEGHFKYCFMAIGACIEG 182

BLAST of MELO3C021996T1 vs. NCBI nr
Match: gi|659082609|ref|XP_008441933.1| (PREDICTED: uncharacterized protein LOC103485927 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1

Query: 16 RTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTVLEMDDSGN 75
          R N GV++SY K+WRAKE ++K+L GD  +SYALIP+FF KL E N G+ T  E+D +G+
Sbjct: 2  RMNYGVSVSYYKAWRAKESVMKLLKGDADDSYALIPKFFSKLKEINPGSFTAYEIDPNGH 61

Query: 76 FKLCFMAFGASIEG 90
          FK CFMA  +SIEG
Sbjct: 62 FKYCFMAIASSIEG 75

BLAST of MELO3C021996T1 vs. NCBI nr
Match: gi|658015373|ref|XP_008343020.1| (PREDICTED: uncharacterized protein LOC103405783 [Malus domestica])

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+I+   R  +GVN+SY+K+WRA+EH   ++ G   ES+A +P +   L   N GT T 
Sbjct: 208 PKDIIEDMRAQVGVNMSYEKAWRAREHAFDMIRGSPEESFAALPAYCXMLEXKNPGTITH 267

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E DD+ +F   FMA GASI G
Sbjct: 268 IETDDNNHFLYFFMAMGASIRG 289

BLAST of MELO3C021996T1 vs. NCBI nr
Match: gi|658037456|ref|XP_008354295.1| (PREDICTED: uncharacterized protein LOC103417917 [Malus domestica])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+I+   R  +GVN+SY+K+WRA+EH   ++ G   ES+A +P +   L   N GT T 
Sbjct: 240 PKDIIEDMRXQVGVNMSYEKAWRAREHAFDMIRGSPEESFAXLPXYCAMLESKNPGTITH 299

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E DD+ +F   FMA GASI G
Sbjct: 300 IETDDNNHFLYFFMAMGASIRG 321

BLAST of MELO3C021996T1 vs. NCBI nr
Match: gi|922410556|ref|XP_013627360.1| (PREDICTED: uncharacterized protein LOC106333459 [Brassica oleracea var. oleracea])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+IM KAR + GV ISY K+WR++EH   I  G   +SY  +P +F  + E N G+ T 
Sbjct: 19  PKQIMEKARKDHGVVISYSKAWRSQEHAQDIARGTPDDSYEALPSWFHMIKEKNSGSVTF 78

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E+D  G FK  F++ G SI G
Sbjct: 79  IEVDSVGKFKYAFLSLGPSIRG 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZUM3_ARATH1.6e-0937.80Mutator-like transposase OS=Arabidopsis thaliana GN=At2g02190 PE=4 SV=1[more]
Q9SKM2_ARATH1.6e-0937.80Mutator-like transposase OS=Arabidopsis thaliana GN=At2g15150 PE=4 SV=1[more]
Q9SI31_ARATH1.6e-0937.80Mutator-like transposase OS=Arabidopsis thaliana GN=At2g04950 PE=4 SV=1[more]
U5D175_AMBTC3.5e-0940.24Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p000016... [more]
W1PUP6_AMBTC4.6e-0942.17Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00070750 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|659102873|ref|XP_008452360.1|2.0e-1857.95PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo][more]
gi|659082609|ref|XP_008441933.1|3.2e-1658.11PREDICTED: uncharacterized protein LOC103485927 [Cucumis melo][more]
gi|658015373|ref|XP_008343020.1|4.8e-1245.12PREDICTED: uncharacterized protein LOC103405783 [Malus domestica][more]
gi|658037456|ref|XP_008354295.1|6.3e-1245.12PREDICTED: uncharacterized protein LOC103417917 [Malus domestica][more]
gi|922410556|ref|XP_013627360.1|1.1e-1145.12PREDICTED: uncharacterized protein LOC106333459 [Brassica oleracea var. oleracea... [more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C021996MELO3C021996gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C021996T1MELO3C021996T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C021996T1.cds2MELO3C021996T1.cds2CDS
MELO3C021996T1.cds1MELO3C021996T1.cds1CDS


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 8..89
score: 9.0
NoneNo IPR availablePANTHERPTHR31973:SF22SUBFAMILY NOT NAMEDcoord: 8..89
score: 9.0