MELO3C021996 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021996
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMutator-like transposase
Locationchr9 : 2058143 .. 2058718 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTACTGATCGTTCTATTCCTAAAGAGATTATGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAATCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACATAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCTAGGTATGATCAGTTTTTTATATATAAACGATCGTTTAATATTGTTTAGATATTAAACGATCATTTATAAACGATATTAGATATTAGTGTTGTATATGTAAACGGTCGCTTAATATTGTTTATGTATAGTAAGAAGATCGCTTAAAGATATATAAACGATCGCTTAAAGATATATAAACGATCGCTTAAATATATATAAATGATCGCTTAACTAATATAAACGATCGCTTAACTAACATAAACAATCGCTTAACTAATATAAACGATTGTTTGTTTGTGCTAATAGAAATATGTTTTTAATTATTATAGGTACATGCACTGTTTTAGAAATGGATGATAGTGGTAATTTCAAGTTATGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGA

mRNA sequence

ATGTCTACTGATCGTTCTATTCCTAAAGAGATTATGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAATCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACATAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCTAGGTACATGCACTGTTTTAGAAATGGATGATAGTGGTAATTTCAAGTTATGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGA

Coding sequence (CDS)

ATGTCTACTGATCGTTCTATTCCTAAAGAGATTATGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAGAAATCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACATGGTGACATAGTTGAATCGTATGCATTGATTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCTAGGTACATGCACTGTTTTAGAAATGGATGATAGTGGTAATTTCAAGTTATGTTTTATGGCTTTTGGTGCATCAATTGAGGGGTGA

Protein sequence

MSTDRSIPKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTVLEMDDSGNFKLCFMAFGASIEG*
Homology
[Close]
BLAST of MELO3C021996 vs. TrEMBL
Match: Q9ZUM3_ARATH (Mutator-like transposase OS=Arabidopsis thaliana GN=At2g02190 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+++   R + GV I+Y K+WR +EH  ++  G   +S+ ++PR+F ++  +N G+ T 
Sbjct: 277 PKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPRWFHRVQVTNPGSITF 336

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
            + D +  FK  F+AFGASI G
Sbjct: 337 FKKDSANKFKYAFLAFGASIRG 358

[Close]
BLAST of MELO3C021996 vs. TrEMBL
Match: Q9SKM2_ARATH (Mutator-like transposase OS=Arabidopsis thaliana GN=At2g15150 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+++   R + GV I+Y K+WR +EH  ++  G   +S+ ++PR+F ++  +N G+ T 
Sbjct: 154 PKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPRWFHRVQVTNPGSITF 213

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
            + D +  FK  F+AFGASI G
Sbjct: 214 FKKDSANKFKYAFLAFGASIRG 235

[Close]
BLAST of MELO3C021996 vs. TrEMBL
Match: Q9SI31_ARATH (Mutator-like transposase OS=Arabidopsis thaliana GN=At2g04950 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 31/82 (37.80%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+++   R + GV I+Y K+WR +EH  ++  G   +S+ ++PR+F ++  +N G+ T 
Sbjct: 154 PKQLIEIFRKDHGVGINYSKAWRVQEHAAELARGLPDDSFEVLPRWFHRVQVTNPGSITF 213

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
            + D +  FK  F+AFGASI G
Sbjct: 214 FKKDSANKFKYAFLAFGASIRG 235

[Close]
BLAST of MELO3C021996 vs. TrEMBL
Match: U5D175_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p00001680 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           P++I  + +   GV ++Y K+WR+KEH  + L G   ESY L+P F   L ++N GT   
Sbjct: 214 PQDIRGEMKHKYGVRMNYMKAWRSKEHAQEELRGKANESYRLLPGFLHMLQKTNPGTIVH 273

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E +D  +FK  F+A  ASI+G
Sbjct: 274 METEDDNSFKYLFVALDASIKG 295

[Close]
BLAST of MELO3C021996 vs. TrEMBL
Match: W1PUP6_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00070750 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PKEIM     N GV I Y ++ R KE  +KILHG   ++Y ++P +  KL++ N GT   
Sbjct: 381 PKEIMKDIHRNYGVQIGYSQARRGKELAMKILHGSYDDAYHILPSYCQKLIDKNPGTIAN 440

Query: 68  LEMD-DSGNFKLCFMAFGASIEG 90
           +E+D +  +FK  F+AF A+I G
Sbjct: 441 IEVDKEDKSFKRLFVAFHATISG 463

[Close]
BLAST of MELO3C021996 vs. NCBI nr
Match: gi|659102873|ref|XP_008452360.1| (PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-18
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 2   STDRSIPKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESN 61
           S DRS P +IM   RT LGVN+SY K+WRAKE ++  L+G+  ESYALIP F  KL E N
Sbjct: 95  SFDRSTPNDIMIHMRTKLGVNVSYYKAWRAKELLMNSLNGEAKESYALIPNFCMKLKEIN 154

Query: 62  LGTCTVLEMDDSGNFKLCFMAFGASIEG 90
            G+ T  E D  G+FK CFMA GA IEG
Sbjct: 155 PGSFTAYETDTEGHFKYCFMAIGACIEG 182

[Close]
BLAST of MELO3C021996 vs. NCBI nr
Match: gi|659082609|ref|XP_008441933.1| (PREDICTED: uncharacterized protein LOC103485927 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 16 RTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTVLEMDDSGN 75
          R N GV++SY K+WRAKE ++K+L GD  +SYALIP+FF KL E N G+ T  E+D +G+
Sbjct: 2  RMNYGVSVSYYKAWRAKESVMKLLKGDADDSYALIPKFFSKLKEINPGSFTAYEIDPNGH 61

Query: 76 FKLCFMAFGASIEG 90
          FK CFMA  +SIEG
Sbjct: 62 FKYCFMAIASSIEG 75

[Close]
BLAST of MELO3C021996 vs. NCBI nr
Match: gi|658015373|ref|XP_008343020.1| (PREDICTED: uncharacterized protein LOC103405783 [Malus domestica])

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+I+   R  +GVN+SY+K+WRA+EH   ++ G   ES+A +P +   L   N GT T 
Sbjct: 208 PKDIIEDMRAQVGVNMSYEKAWRAREHAFDMIRGSPEESFAALPAYCXMLEXKNPGTITH 267

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E DD+ +F   FMA GASI G
Sbjct: 268 IETDDNNHFLYFFMAMGASIRG 289

[Close]
BLAST of MELO3C021996 vs. NCBI nr
Match: gi|658037456|ref|XP_008354295.1| (PREDICTED: uncharacterized protein LOC103417917 [Malus domestica])

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-12
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+I+   R  +GVN+SY+K+WRA+EH   ++ G   ES+A +P +   L   N GT T 
Sbjct: 240 PKDIIEDMRXQVGVNMSYEKAWRAREHAFDMIRGSPEESFAXLPXYCAMLESKNPGTITH 299

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E DD+ +F   FMA GASI G
Sbjct: 300 IETDDNNHFLYFFMAMGASIRG 321

[Close]
BLAST of MELO3C021996 vs. NCBI nr
Match: gi|922410556|ref|XP_013627360.1| (PREDICTED: uncharacterized protein LOC106333459 [Brassica oleracea var. oleracea])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 8   PKEIMHKARTNLGVNISYQKSWRAKEHMVKILHGDIVESYALIPRFFDKLVESNLGTCTV 67
           PK+IM KAR + GV ISY K+WR++EH   I  G   +SY  +P +F  + E N G+ T 
Sbjct: 19  PKQIMEKARKDHGVVISYSKAWRSQEHAQDIARGTPDDSYEALPSWFHMIKEKNSGSVTF 78

Query: 68  LEMDDSGNFKLCFMAFGASIEG 90
           +E+D  G FK  F++ G SI G
Sbjct: 79  IEVDSVGKFKYAFLSLGPSIRG 100

The following BLAST results are available for this feature:
BLAST of MELO3C021996 vs. TrEMBL
Match NameE-valueIdentityDescription
Q9ZUM3_ARATH1.6e-0937.80Mutator-like transposase OS=Arabidopsis thaliana GN=At2g02190 PE=4 SV=1[more]
Q9SKM2_ARATH1.6e-0937.80Mutator-like transposase OS=Arabidopsis thaliana GN=At2g15150 PE=4 SV=1[more]
Q9SI31_ARATH1.6e-0937.80Mutator-like transposase OS=Arabidopsis thaliana GN=At2g04950 PE=4 SV=1[more]
U5D175_AMBTC3.5e-0940.24Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s04652p000016... [more]
W1PUP6_AMBTC4.6e-0942.17Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00070750 PE=4 SV=... [more]
BLAST of MELO3C021996 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102873|ref|XP_008452360.1|2.0e-1857.95PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo][more]
gi|659082609|ref|XP_008441933.1|3.2e-1658.11PREDICTED: uncharacterized protein LOC103485927 [Cucumis melo][more]
gi|658015373|ref|XP_008343020.1|4.8e-1245.12PREDICTED: uncharacterized protein LOC103405783 [Malus domestica][more]
gi|658037456|ref|XP_008354295.1|6.3e-1245.12PREDICTED: uncharacterized protein LOC103417917 [Malus domestica][more]
gi|922410556|ref|XP_013627360.1|1.1e-1145.12PREDICTED: uncharacterized protein LOC106333459 [Brassica oleracea var. oleracea... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021996T1MELO3C021996T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31973FAMILY NOT NAMEDcoord: 8..89
score: 9.0
NoneNo IPR availablePANTHERPTHR31973:SF22SUBFAMILY NOT NAMEDcoord: 8..89
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021996Watermelon (97103) v2mewmbB014
MELO3C021996Watermelon (97103) v2mewmbB022
MELO3C021996Watermelon (97103) v2mewmbB026
MELO3C021996Watermelon (97103) v2mewmbB038
MELO3C021996Wax gourdmewgoB045
MELO3C021996Wax gourdmewgoB046
MELO3C021996Melon (DHL92) v3.5.1memeB005
MELO3C021996Melon (DHL92) v3.5.1memeB011
MELO3C021996Melon (DHL92) v3.5.1memeB014
MELO3C021996Cucumber (Gy14) v1cgymeB152
MELO3C021996Cucumber (Gy14) v1cgymeB265
MELO3C021996Cucumber (Gy14) v1cgymeB472
MELO3C021996Cucumber (Gy14) v1cgymeB550
MELO3C021996Cucurbita maxima (Rimu)cmameB251
MELO3C021996Cucurbita maxima (Rimu)cmameB634
MELO3C021996Cucurbita moschata (Rifu)cmomeB239
MELO3C021996Cucurbita moschata (Rifu)cmomeB624
MELO3C021996Cucurbita moschata (Rifu)cmomeB630
MELO3C021996Wild cucumber (PI 183967)cpimeB001
MELO3C021996Wild cucumber (PI 183967)cpimeB165
MELO3C021996Wild cucumber (PI 183967)cpimeB349
MELO3C021996Wild cucumber (PI 183967)cpimeB354
MELO3C021996Cucumber (Chinese Long) v2cumeB006
MELO3C021996Cucumber (Chinese Long) v2cumeB174
MELO3C021996Cucumber (Chinese Long) v2cumeB358
MELO3C021996Cucumber (Chinese Long) v2cumeB366
MELO3C021996Watermelon (Charleston Gray)mewcgB025
MELO3C021996Watermelon (Charleston Gray)mewcgB002
MELO3C021996Watermelon (Charleston Gray)mewcgB007
MELO3C021996Watermelon (Charleston Gray)mewcgB029
MELO3C021996Watermelon (97103) v1mewmB003
MELO3C021996Watermelon (97103) v1mewmB008
MELO3C021996Watermelon (97103) v1mewmB036
MELO3C021996Watermelon (97103) v1mewmB021
MELO3C021996Cucurbita pepo (Zucchini)cpemeB019
MELO3C021996Cucurbita pepo (Zucchini)cpemeB155
MELO3C021996Cucurbita pepo (Zucchini)cpemeB358
MELO3C021996Bottle gourd (USVL1VR-Ls)lsimeB162
MELO3C021996Bottle gourd (USVL1VR-Ls)lsimeB165
MELO3C021996Cucumber (Gy14) v2cgybmeB002
MELO3C021996Cucumber (Gy14) v2cgybmeB299
MELO3C021996Cucumber (Gy14) v2cgybmeB306
MELO3C021996Silver-seed gourdcarmeB0100
MELO3C021996Silver-seed gourdcarmeB0260
MELO3C021996Silver-seed gourdcarmeB0682
MELO3C021996Wax gourdmewgoB022
MELO3C021996Cucumber (Chinese Long) v3cucmeB001
MELO3C021996Cucumber (Chinese Long) v3cucmeB167
MELO3C021996Cucumber (Chinese Long) v3cucmeB358
MELO3C021996Cucumber (Chinese Long) v3cucmeB367