MELO3C021857T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021857T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Biosynthetic arginine decarboxylase
Location	chr11 : 6355387 .. 6355671 (-)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGAATGACATGTCTCAGACAAATTCTATTAACTCACGTGTCGACAGTAAGGAGGGTGAGAATGACAGGTCTGAAACAACTGTCCTTGAAGATATGTGTGAGAAGGGCAGTGTTGATGAGATTAAGATCATTACAGACACAGAGCGAAGGGTTGATGAGAATGAGGCTATTGCAAAATCGACTGAAAATGAGACTAAGCAGTATCATCCAATAAATATCAGTAAGTATGATCCATCTCTTGATCTTCCTATTGTGCTGAGGAAAGGTATTAGGTCATGA

mRNA sequence

ATGGGTGAGAATGACATGTCTCAGACAAATTCTATTAACTCACGTGTCGACAGTAAGGAGGGTGAGAATGACAGGTCTGAAACAACTGTCCTTGAAGATATGTGTGAGAAGGGCAGTGTTGATGAGATTAAGATCATTACAGACACAGAGCGAAGGGTTGATGAGAATGAGGCTATTGCAAAATCGACTGAAAATGAGACTAAGCAGTATCATCCAATAAATATCAGTAAGTATGATCCATCTCTTGATCTTCCTATTGTGCTGAGGAAAGGTATTAGGTCATGA

Coding sequence (CDS)

ATGGGTGAGAATGACATGTCTCAGACAAATTCTATTAACTCACGTGTCGACAGTAAGGAGGGTGAGAATGACAGGTCTGAAACAACTGTCCTTGAAGATATGTGTGAGAAGGGCAGTGTTGATGAGATTAAGATCATTACAGACACAGAGCGAAGGGTTGATGAGAATGAGGCTATTGCAAAATCGACTGAAAATGAGACTAAGCAGTATCATCCAATAAATATCAGTAAGTATGATCCATCTCTTGATCTTCCTATTGTGCTGAGGAAAGGTATTAGGTCATGA

Protein sequence

MGENDMSQTNSINSRVDSKEGENDRSETTVLEDMCEKGSVDEIKIITDTERRVDENEAIAKSTENETKQYHPINISKYDPSLDLPIVLRKGIRS*

Homology

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BLAST of MELO3C021857T1 vs. NCBI nr
Match: gi|778674269|ref|XP_011650176.1| (PREDICTED: uncharacterized protein LOC105434746 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 9  TNSINSRVDSKEGENDRSETTVLEDMCEKGSVDEIKIITDTERRVDENEAIAKSTENETK 68
          T+SINS  +++  END SETTV+++M E+GS++E   + D E  + ENE +A+ TEN   
Sbjct: 2  TDSINSYSNNRTCENDESETTVMKNMGEQGSIEE--AVIDREDIIIENEVVAEHTENS-- 61

Query: 69 QYHPINISKYDPSLDLPIVLRKGIRS 95
                 S+YD S DLPI LRKG  S
Sbjct: 62 -------SRYDSSFDLPIALRKGTSS 76

The following BLAST results are available for this feature:

BLAST of MELO3C021857T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674269\|ref\|XP_011650176.1\|	3.1e-09	46.51	PREDICTED: uncharacterized protein LOC105434746 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021857	MELO3C021857	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C021857T1	MELO3C021857T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021857T1.cds1	MELO3C021857T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 46..66 scor