MELO3C021857 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021857
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBiosynthetic arginine decarboxylase
Locationchr11 : 6355387 .. 6355671 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAGAATGACATGTCTCAGACAAATTCTATTAACTCACGTGTCGACAGTAAGGAGGGTGAGAATGACAGGTCTGAAACAACTGTCCTTGAAGATATGTGTGAGAAGGGCAGTGTTGATGAGATTAAGATCATTACAGACACAGAGCGAAGGGTTGATGAGAATGAGGCTATTGCAAAATCGACTGAAAATGAGACTAAGCAGTATCATCCAATAAATATCAGTAAGTATGATCCATCTCTTGATCTTCCTATTGTGCTGAGGAAAGGTATTAGGTCATGA

mRNA sequence

ATGGGTGAGAATGACATGTCTCAGACAAATTCTATTAACTCACGTGTCGACAGTAAGGAGGGTGAGAATGACAGGTCTGAAACAACTGTCCTTGAAGATATGTGTGAGAAGGGCAGTGTTGATGAGATTAAGATCATTACAGACACAGAGCGAAGGGTTGATGAGAATGAGGCTATTGCAAAATCGACTGAAAATGAGACTAAGCAGTATCATCCAATAAATATCAGTAAGTATGATCCATCTCTTGATCTTCCTATTGTGCTGAGGAAAGGTATTAGGTCATGA

Coding sequence (CDS)

ATGGGTGAGAATGACATGTCTCAGACAAATTCTATTAACTCACGTGTCGACAGTAAGGAGGGTGAGAATGACAGGTCTGAAACAACTGTCCTTGAAGATATGTGTGAGAAGGGCAGTGTTGATGAGATTAAGATCATTACAGACACAGAGCGAAGGGTTGATGAGAATGAGGCTATTGCAAAATCGACTGAAAATGAGACTAAGCAGTATCATCCAATAAATATCAGTAAGTATGATCCATCTCTTGATCTTCCTATTGTGCTGAGGAAAGGTATTAGGTCATGA

Protein sequence

MGENDMSQTNSINSRVDSKEGENDRSETTVLEDMCEKGSVDEIKIITDTERRVDENEAIAKSTENETKQYHPINISKYDPSLDLPIVLRKGIRS*
Homology
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BLAST of MELO3C021857 vs. NCBI nr
Match: gi|778674269|ref|XP_011650176.1| (PREDICTED: uncharacterized protein LOC105434746 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 9  TNSINSRVDSKEGENDRSETTVLEDMCEKGSVDEIKIITDTERRVDENEAIAKSTENETK 68
          T+SINS  +++  END SETTV+++M E+GS++E   + D E  + ENE +A+ TEN   
Sbjct: 2  TDSINSYSNNRTCENDESETTVMKNMGEQGSIEE--AVIDREDIIIENEVVAEHTENS-- 61

Query: 69 QYHPINISKYDPSLDLPIVLRKGIRS 95
                 S+YD S DLPI LRKG  S
Sbjct: 62 -------SRYDSSFDLPIALRKGTSS 76

The following BLAST results are available for this feature:
BLAST of MELO3C021857 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674269|ref|XP_011650176.1|3.1e-0946.51PREDICTED: uncharacterized protein LOC105434746 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45059melon EST collection version 4.0transcribed_cluster
MU55587melon EST collection version 4.0transcribed_cluster
MU59135melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021857T1MELO3C021857T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45059MU45059transcribed_cluster
MU59135MU59135transcribed_cluster
MU55587MU55587transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 46..66
scor