MELO3C021828T2 (mRNA) Melon (DHL92) v3.5.1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACATCTGGGAGCAGCTCAAATTGATCGAATGCAATTAGACCTTCTTATAACAGAGTAAGAAGTGAACATAAATTTTTTCCAATTTTTTATTTCTCTTTTTCAGAGGAAAGCGATGCCGTAACATTGAATCTATTATCTAATTTTTTATCCAGAAATAAATGGTTTCAATTTTTATCTTCTAAGCATAGCTTAACTTCTTTAGACTTCGTATCTGTTTTGGTTCAAATATCCACTCTCACGTCACTGAATTCATAAAATAGGGGCAGAGGAACTTTCTTACTTACCCAGGACCTAGGTGATGTGCATTTTTAATGATTCCTAAGGCTCATCAAATACAAGGAATTGAGTGACCATTAAGGATAGGATAATAATTTAATGTCATCATACACCTATGACCTATATAAACTGTATATGACAAATAATGGTGGTCATAATGTAGTATGCTACGTCTAATGGGTTTGGATTGAACTTGGAAATAAATGGGTTTTAATGCTCCCATCAAGTTGGGTTATAAATGTTGATTGAACTAACCAGTCCTGATGTAGCCTATATCAAAGACTGGAATTGTTTTAGCCTGTTTTTTTTTTTTTTTGGTATTTTCAATTAACTGTTTAATTAGTAGTTAGTTAGAAATTAGTCTCAATAACTAACTAAGAGGTCATGTGTTCAATCCATGGTGGCCACCTAAGAATTAATTTCATACAAGTTTCCTTGACACTCAAAGGTTAGGCGCCTTGTCCCGTAAGATTAGTCAAGGTGCTCGTAAAAGGCATGAACACTCATGGATAAAAAAAAGAAATAGTAGTTAGTTAGGAATTAGTTTGACGGTTTGCTAAGTAGTATAAAGAACTAGACATTGCTTTGATAGGTTGTTTCCTAGATAGATCGGTTGGAGGGGTTTGACTTGTAGAACTAAATACTATGTTTTTTACTTTTTGGGATGGGAAACAATACAATAACCATTCATTGATATAATGAAATAGAATACAAAAGGTCCTATGTTCTATTTACAAAAAGCACCACAATTGATCGATGAGTGCTGTAAGGCTATAATTACAAAAAGAAAAATAGGTGACAATTTGCTTCAATTGATAGCTAAAATTGATGTACCTTCTATAAAATAGCCTGTCACAGTCCTTGTCCAAAAGATGCAAGCATCTTTGCCCATTTTAGAGTTGCCAAGGTCAAATAAAAGACCCACCTTGGGAATTTTTGAGTTTTATCTTGGTATAAAAATGTTTCACCTTTTTGCAACTACAAGGTCAAGATACTAGGCTTTATCGATAAAATGAAAAGTTCCTAATACACTAGGGATGCCAACTCCTCAAGGCAGTGAAATAAGGGAACCAAAAATGAAAACAGTGAATTGCAACAAATCGACACCTCTTTCAAAACTCAAGCTCCTTATGCTCATTTTTTACTTGGCTTGTCTCAAGTCTTTTTCTTGGTGTTCTCTTTCGAAGAGTTTTGAAGTGTTCTCAATTCAGGATATACATAGTGGTTGGAATGCTTGCATCATTCCATTTTAGTTCTATTTTTTTTGTTTTTAGTTGTACTTTTTGGTTTGTCTTTATTTTTTGTATCCTTGTATTTTTTTTAGCTGACAGTCTATTTTCATTCCCTTAATGAAAAGTGTTGTATTATTTAAAAAAAGATAATAAAAGAAATAAAAAGTGAATTAGTACTAAGCTACATAGTCTTATACTCAATTAGAGAAGTTTCTTCTTATTTCATTGGATGAGATCCTCTCCCTTCTTTTTGTATAATTTCATATTATCAATGAAATTTTATCCAATAAAAAATGGTCATAGTTTAATTAATAATATGGTTATGGACTTGAAAGTAATCACATAGCCGTGTAAATAAGTCCACTACCTTTCCCATTTCTACTAAACTTTATTTATGGTCTTCCAGTTAAATAGAGGAGATATCCCTGTTTCTTTTTCATCTGGCATGGTATGTTAGCATTTGTGTTCTGCAAAATATTTCTAAAGTAATCTTTCAATGTTTGTCTTGCAGGTCTACATATGCGACAACCATACGTGATTCTAAGTATGCCCGCGAGAGAGAATTTCTTAAAGCTGTATGAATTATTTAAACTATTAAAACTCTTCACTCAGACTTTCCTTTTCTGCACCTTGTTTTTAATTAGACATTGGATAGGCTGGTTTTTCATTCATGTTATTCATGCATATTGGCATAATAATAATTTAGGACATAATTATGTTAAAGCTGAATCATGTCCCAATTCCAACTTGGTATATGGTTGAAATTAGGGATAGACTTCAAATGATATATTTTACGTCCCTTGGTGAATTTGGTTTTGTTTTAGGTTTATTTTGTGATGATTCAAGATTATAGGTTGGTTGATGGCTTTCTGTGTAGGATATTGCATGTTACAATTGTAAACTAATTGATCATAGTTGAAGACCAAGATATAAGATACATACTGATTAGTTGAGTCGAGGTGCACCTAAGCTGGTCCAGACATTCACGAATAGAAGAAAAAAGATTGATACTGGTTATGGCTTATGGCTATTAAGGATTGCTTGGTGACTTAAATCCATTCTAAACTGTAAATTGTTAAATATATACTCAATTATTTGAACTTTAAAATTCGTAATTTTTAGCAATGGAATTATCTGAACAAGATCTTTTTACCATATGATTTGATGTAGGTTCATAATTGTTTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCGCTTGGACGGGCTCAGGTACTTTACTGAATATTGGGTGTGACTTTTAAATCTTTTACTGCAATCTGCATCTTTCATACTGAATTTGCGCATGTTATATAATACTATTTCAGTTCTGTTATAAAATTTTCTGTTTGAGCAGGAACTTTGTGTCTTGTTGGATGACTATTGGGAGCGCATGAATCTGAAGTTTCCGATCTACGTTTCAGCAGGTCCTCTTTGA ATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACATCTGGGAGCAGCTCAAATTGATCGAATGCAATTAGACCTTCTTATAACAGAGTCTACATATGCGACAACCATACGTGATTCTAAGTATGCCCGCGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTTTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCGCTTGGACGGGCTCAGGAACTTTGTGTCTTGTTGGATGACTATTGGGAGCGCATGAATCTGAAGTTTCCGATCTACGTTTCAGCAGGTCCTCTTTGA ATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACATCTGGGAGCAGCTCAAATTGATCGAATGCAATTAGACCTTCTTATAACAGAGTCTACATATGCGACAACCATACGTGATTCTAAGTATGCCCGCGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTTTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCGCTTGGACGGGCTCAGGAACTTTGTGTCTTGTTGGATGACTATTGGGAGCGCATGAATCTGAAGTTTCCGATCTACGTTTCAGCAGGTCCTCTTTGA MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAGPL*
BLAST of MELO3C021828T2 vs. Swiss-Prot
Match: CPS3B_ARATH (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2) HSP 1 Score: 186.8 bits (473), Expect = 1.3e-46 Identity = 88/108 (81.48%), Postives = 97/108 (89.81%), Query Frame = 1
BLAST of MELO3C021828T2 vs. Swiss-Prot
Match: INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 4.7e-41 Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 1
BLAST of MELO3C021828T2 vs. Swiss-Prot
Match: INT11_CHICK (Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 8.8e-40 Identity = 80/108 (74.07%), Postives = 87/108 (80.56%), Query Frame = 1
BLAST of MELO3C021828T2 vs. Swiss-Prot
Match: INT11_RAT (Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39 Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1
BLAST of MELO3C021828T2 vs. Swiss-Prot
Match: INT11_PONAB (Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2) HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39 Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TrEMBL
Match: A0A0A0LQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 5.2e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TrEMBL
Match: Q6E435_CUCME (ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 1.3e-53 Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TrEMBL
Match: U5G1X1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 5.9e-51 Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TrEMBL
Match: B9HVV0_POPTR (Metallo-beta-lactamase family protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=2) HSP 1 Score: 208.0 bits (528), Expect = 5.9e-51 Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TrEMBL
Match: A0A061E8Z1_THECC (Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma cacao GN=TCM_011055 PE=4 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 7.8e-51 Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TAIR10
Match: AT2G01730.1 (AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II) HSP 1 Score: 186.8 bits (473), Expect = 7.2e-48 Identity = 88/108 (81.48%), Postives = 97/108 (89.81%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TAIR10
Match: AT1G61010.1 (AT1G61010.1 cleavage and polyadenylation specificity factor 73-I) HSP 1 Score: 97.4 bits (241), Expect = 5.7e-21 Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1
BLAST of MELO3C021828T2 vs. TAIR10
Match: AT5G23880.1 (AT5G23880.1 cleavage and polyadenylation specificity factor 100) HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10 Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 1
BLAST of MELO3C021828T2 vs. NCBI nr
Match: gi|778673825|ref|XP_011650069.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X3 [Cucumis sativus]) HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of MELO3C021828T2 vs. NCBI nr
Match: gi|778673818|ref|XP_011650067.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis sativus]) HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of MELO3C021828T2 vs. NCBI nr
Match: gi|659118492|ref|XP_008459149.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X3 [Cucumis melo]) HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of MELO3C021828T2 vs. NCBI nr
Match: gi|778673821|ref|XP_011650068.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Cucumis sativus]) HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of MELO3C021828T2 vs. NCBI nr
Match: gi|659118488|ref|XP_008459147.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis melo]) HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
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