MELO3C021828 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021828
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCleavage and polyadenylation specificity factor subunit 3-II
Locationchr11 : 6832883 .. 6833185 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACATCTGGGAGCAGCTCAAATTGATCGAATGCAATTAGACCTTCTTATAACAGAGTAAGAAGTGAACATAAATTTTTTCCAATTTTTTATTTCTCTTTTTCAGAGGAAAGCGATGCCGTAACATTGAATCTATTATCTAATTTTTTATCCAGAAATAAATGGTTTCAATTTTTATCTTCTAAGCATAGCTTAACTTCTTTAGACTTCGTATCTGTTTTGGTTCAAATATCCACTCTCACGTCACTGAATTCATAAAATAGGGGCAGAGGAACTTTCTTACTTACCCAGGACCTAGGTGATGTGCATTTTTAATGATTCCTAAGGCTCATCAAATACAAGGAATTGAGTGACCATTAAGGATAGGATAATAATTTAATGTCATCATACACCTATGACCTATATAAACTGTATATGACAAATAATGGTGGTCATAATGTAGTATGCTACGTCTAATGGGTTTGGATTGAACTTGGAAATAAATGGGTTTTAATGCTCCCATCAAGTTGGGTTATAAATGTTGATTGAACTAACCAGTCCTGATGTAGCCTATATCAAAGACTGGAATTGTTTTAGCCTGTTTTTTTTTTTTTTTGGTATTTTCAATTAACTGTTTAATTAGTAGTTAGTTAGAAATTAGTCTCAATAACTAACTAAGAGGTCATGTGTTCAATCCATGGTGGCCACCTAAGAATTAATTTCATACAAGTTTCCTTGACACTCAAAGGTTAGGCGCCTTGTCCCGTAAGATTAGTCAAGGTGCTCGTAAAAGGCATGAACACTCATGGATAAAAAAAAGAAATAGTAGTTAGTTAGGAATTAGTTTGACGGTTTGCTAAGTAGTATAAAGAACTAGACATTGCTTTGATAGGTTGTTTCCTAGATAGATCGGTTGGAGGGGTTTGACTTGTAGAACTAAATACTATGTTTTTTACTTTTTGGGATGGGAAACAATACAATAACCATTCATTGATATAATGAAATAGAATACAAAAGGTCCTATGTTCTATTTACAAAAAGCACCACAATTGATCGATGAGTGCTGTAAGGCTATAATTACAAAAAGAAAAATAGGTGACAATTTGCTTCAATTGATAGCTAAAATTGATGTACCTTCTATAAAATAGCCTGTCACAGTCCTTGTCCAAAAGATGCAAGCATCTTTGCCCATTTTAGAGTTGCCAAGGTCAAATAAAAGACCCACCTTGGGAATTTTTGAGTTTTATCTTGGTATAAAAATGTTTCACCTTTTTGCAACTACAAGGTCAAGATACTAGGCTTTATCGATAAAATGAAAAGTTCCTAATACACTAGGGATGCCAACTCCTCAAGGCAGTGAAATAAGGGAACCAAAAATGAAAACAGTGAATTGCAACAAATCGACACCTCTTTCAAAACTCAAGCTCCTTATGCTCATTTTTTACTTGGCTTGTCTCAAGTCTTTTTCTTGGTGTTCTCTTTCGAAGAGTTTTGAAGTGTTCTCAATTCAGGATATACATAGTGGTTGGAATGCTTGCATCATTCCATTTTAGTTCTATTTTTTTTGTTTTTAGTTGTACTTTTTGGTTTGTCTTTATTTTTTGTATCCTTGTATTTTTTTTAGCTGACAGTCTATTTTCATTCCCTTAATGAAAAGTGTTGTATTATTTAAAAAAAGATAATAAAAGAAATAAAAAGTGAATTAGTACTAAGCTACATAGTCTTATACTCAATTAGAGAAGTTTCTTCTTATTTCATTGGATGAGATCCTCTCCCTTCTTTTTGTATAATTTCATATTATCAATGAAATTTTATCCAATAAAAAATGGTCATAGTTTAATTAATAATATGGTTATGGACTTGAAAGTAATCACATAGCCGTGTAAATAAGTCCACTACCTTTCCCATTTCTACTAAACTTTATTTATGGTCTTCCAGTTAAATAGAGGAGATATCCCTGTTTCTTTTTCATCTGGCATGGTATGTTAGCATTTGTGTTCTGCAAAATATTTCTAAAGTAATCTTTCAATGTTTGTCTTGCAGGTCTACATATGCGACAACCATACGTGATTCTAAGTATGCCCGCGAGAGAGAATTTCTTAAAGCTGTATGAATTATTTAAACTATTAAAACTCTTCACTCAGACTTTCCTTTTCTGCACCTTGTTTTTAATTAGACATTGGATAGGCTGGTTTTTCATTCATGTTATTCATGCATATTGGCATAATAATAATTTAGGACATAATTATGTTAAAGCTGAATCATGTCCCAATTCCAACTTGGTATATGGTTGAAATTAGGGATAGACTTCAAATGATATATTTTACGTCCCTTGGTGAATTTGGTTTTGTTTTAGGTTTATTTTGTGATGATTCAAGATTATAGGTTGGTTGATGGCTTTCTGTGTAGGATATTGCATGTTACAATTGTAAACTAATTGATCATAGTTGAAGACCAAGATATAAGATACATACTGATTAGTTGAGTCGAGGTGCACCTAAGCTGGTCCAGACATTCACGAATAGAAGAAAAAAGATTGATACTGGTTATGGCTTATGGCTATTAAGGATTGCTTGGTGACTTAAATCCATTCTAAACTGTAAATTGTTAAATATATACTCAATTATTTGAACTTTAAAATTCGTAATTTTTAGCAATGGAATTATCTGAACAAGATCTTTTTACCATATGATTTGATGTAGGTTCATAATTGTTTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCGCTTGGACGGGCTCAGGTACTTTACTGAATATTGGGTGTGACTTTTAAATCTTTTACTGCAATCTGCATCTTTCATACTGAATTTGCGCATGTTATATAATACTATTTCAGTTCTGTTATAAAATTTTCTGTTTGAGCAGGAACTTTGTGTCTTGTTGGATGACTATTGGGAGCGCATGAATCTGAAGTTTCCGATCTACGTTTCAGCAGGTCCTCTTTGA

mRNA sequence

ATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACATCTGGGAGCAGCTCAAATTGATCGAATGCAATTAGACCTTCTTATAACAGAGTCTACATATGCGACAACCATACGTGATTCTAAGTATGCCCGCGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTTTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCGCTTGGACGGGCTCAGGAACTTTGTGTCTTGTTGGATGACTATTGGGAGCGCATGAATCTGAAGTTTCCGATCTACGTTTCAGCAGGTCCTCTTTGA

Coding sequence (CDS)

ATGTTTTATGCTAAAGTTGGAGATGCTGCTATGGTATACACAGGAGACTATAATATGACACCTGATAGACATCTGGGAGCAGCTCAAATTGATCGAATGCAATTAGACCTTCTTATAACAGAGTCTACATATGCGACAACCATACGTGATTCTAAGTATGCCCGCGAGAGAGAATTTCTTAAAGCTGTTCATAATTGTTTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCGCTTGGACGGGCTCAGGAACTTTGTGTCTTGTTGGATGACTATTGGGAGCGCATGAATCTGAAGTTTCCGATCTACGTTTCAGCAGGTCCTCTTTGA

Protein sequence

MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAGPL*
Homology
[Close]
BLAST of MELO3C021828 vs. Swiss-Prot
Match: CPS3B_ARATH (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-46
Identity = 88/108 (81.48%), Postives = 97/108 (89.81%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           M YAK+GDAA+VYTGDYNMT DRHLGAA+IDR+QLDLLI+ESTYATTIR SKY REREFL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           +AVH C+A GGK LIP+FALGRAQELC+LLDDYWERMN+K PIY S+G
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSG 269

[Close]
BLAST of MELO3C021828 vs. Swiss-Prot
Match: INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-41
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGD ++VYTGDYNMTPDRHLG+A ID+++ D+LITE+TYATTIRDSK  RER+FL
Sbjct: 162 MFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNL-KFPIYVSAG 109
           K +H C+  GGKVLIP FALGR QELC+L+D YWE+MNL   PIY SAG
Sbjct: 222 KRIHECVEKGGKVLIPVFALGRVQELCILIDSYWEQMNLGHIPIYFSAG 270

[Close]
BLAST of MELO3C021828 vs. Swiss-Prot
Match: INT11_CHICK (Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 8.8e-40
Identity = 80/108 (74.07%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MF  KVG  ++VYTGDYNMTPDRHLGAA ID+ + DLLITESTYATTIRDSK  RER+FL
Sbjct: 163 MFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFL 222

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           K VH  +  GGKVLIP FALGRAQELC+LL+ +WERMNLK PIY S G
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTG 270

[Close]
BLAST of MELO3C021828 vs. Swiss-Prot
Match: INT11_RAT (Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MF  KVG  ++VYTGDYNMTPDRHLGAA ID+ + +LLITESTYATTIRDSK  RER+FL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           K VH  +  GGKVLIP FALGRAQELC+LL+ +WERMNLK PIY S G
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTG 270

[Close]
BLAST of MELO3C021828 vs. Swiss-Prot
Match: INT11_PONAB (Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MF  KVG  ++VYTGDYNMTPDRHLGAA ID+ + +LLITESTYATTIRDSK  RER+FL
Sbjct: 163 MFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFL 222

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           K VH  +  GGKVLIP FALGRAQELC+LL+ +WERMNLK PIY S G
Sbjct: 223 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTG 270

[Close]
BLAST of MELO3C021828 vs. TrEMBL
Match: A0A0A0LQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.2e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 222 KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

[Close]
BLAST of MELO3C021828 vs. TrEMBL
Match: Q6E435_CUCME (ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-53
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 194 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 253

Query: 61  KAVHNCLASGGKVLIPTFALGRA-QELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRA QELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 254 KAVHNCLASGGKVLIPTFALGRAQQELCVLLDDYWERMNLKFPIYVSAG 302

[Close]
BLAST of MELO3C021828 vs. TrEMBL
Match: U5G1X1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.9e-51
Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGD+AMVYTGDYNMTPDRHLGAAQIDR++LDLLITESTYATTIRDSKYAREREFL
Sbjct: 1   MFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDRLELDLLITESTYATTIRDSKYAREREFL 60

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVH C+A GGKVLIPTFALGRAQELC+LLDDYWERMNLK PIY SAG
Sbjct: 61  KAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 108

[Close]
BLAST of MELO3C021828 vs. TrEMBL
Match: B9HVV0_POPTR (Metallo-beta-lactamase family protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 5.9e-51
Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGD+AMVYTGDYNMTPDRHLGAAQIDR++LDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDRLELDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVH C+A GGKVLIPTFALGRAQELC+LLDDYWERMNLK PIY SAG
Sbjct: 222 KAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAG 269

[Close]
BLAST of MELO3C021828 vs. TrEMBL
Match: A0A061E8Z1_THECC (Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma cacao GN=TCM_011055 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.8e-51
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR+QLDLLITESTYATTIRDS+Y REREFL
Sbjct: 161 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRLQLDLLITESTYATTIRDSRYGREREFL 220

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNC+A+GGKVLIPTFALGRAQELC+LL+DYWERMNLK PIY S+G
Sbjct: 221 KAVHNCVAAGGKVLIPTFALGRAQELCILLEDYWERMNLKVPIYFSSG 268

[Close]
BLAST of MELO3C021828 vs. TAIR10
Match: AT2G01730.1 (AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II)

HSP 1 Score: 186.8 bits (473), Expect = 7.2e-48
Identity = 88/108 (81.48%), Postives = 97/108 (89.81%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           M YAK+GDAA+VYTGDYNMT DRHLGAA+IDR+QLDLLI+ESTYATTIR SKY REREFL
Sbjct: 162 MVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           +AVH C+A GGK LIP+FALGRAQELC+LLDDYWERMN+K PIY S+G
Sbjct: 222 QAVHKCVAGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSG 269

[Close]
BLAST of MELO3C021828 vs. TAIR10
Match: AT1G61010.1 (AT1G61010.1 cleavage and polyadenylation specificity factor 73-I)

HSP 1 Score: 97.4 bits (241), Expect = 5.7e-21
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MF   +    ++YTGDY+   DRHL AA++ +   D+ I EST    +  S++ RE+ F 
Sbjct: 174 MFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFT 233

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYW 95
             +H+ +A GG+VLIP FALGRAQEL ++LD+YW
Sbjct: 234 DVIHSTVAQGGRVLIPAFALGRAQELLLILDEYW 267

[Close]
BLAST of MELO3C021828 vs. TAIR10
Match: AT5G23880.1 (AT5G23880.1 cleavage and polyadenylation specificity factor 100)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 1 

Query: 11  MVYTGDYNMTPDRHLGAAQIDR-MQLDLLITESTYAT-TIRDSKYAREREFLKAVHNCLA 70
           ++Y  DYN   +RHL    +   ++  +LIT++ +A  T + ++  R++EFL  +   L 
Sbjct: 169 VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLE 228

Query: 71  SGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIY 105
            GG VL+P    GR  EL ++L+ +W +    FPIY
Sbjct: 229 VGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIY 264

[Close]
BLAST of MELO3C021828 vs. NCBI nr
Match: gi|778673825|ref|XP_011650069.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X3 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 222 KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

[Close]
BLAST of MELO3C021828 vs. NCBI nr
Match: gi|778673818|ref|XP_011650067.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 222 KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

[Close]
BLAST of MELO3C021828 vs. NCBI nr
Match: gi|659118492|ref|XP_008459149.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X3 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 222 KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

[Close]
BLAST of MELO3C021828 vs. NCBI nr
Match: gi|778673821|ref|XP_011650068.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 222 KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

[Close]
BLAST of MELO3C021828 vs. NCBI nr
Match: gi|659118488|ref|XP_008459147.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 7.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 60
           MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL
Sbjct: 162 MFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAREREFL 221

Query: 61  KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 109
           KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG
Sbjct: 222 KAVHNCLASGGKVLIPTFALGRAQELCVLLDDYWERMNLKFPIYVSAG 269

The following BLAST results are available for this feature:
BLAST of MELO3C021828 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CPS3B_ARATH1.3e-4681.48Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal... [more]
INT11_DICDI4.7e-4172.48Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3... [more]
INT11_CHICK8.8e-4074.07Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1[more]
INT11_RAT1.2e-3973.15Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2 SV=1[more]
INT11_PONAB1.2e-3973.15Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2[more]
BLAST of MELO3C021828 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQW3_CUCSA5.2e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1[more]
Q6E435_CUCME1.3e-5399.08ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1[more]
U5G1X1_POPTR5.9e-5191.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s11650g PE=4 SV=1[more]
B9HVV0_POPTR5.9e-5191.67Metallo-beta-lactamase family protein OS=Populus trichocarpa GN=POPTR_0010s11650... [more]
A0A061E8Z1_THECC7.8e-5190.74Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma c... [more]
BLAST of MELO3C021828 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G01730.17.2e-4881.48 cleavage and polyadenylation specificity factor 73 kDa subunit-II[more]
AT1G61010.15.7e-2145.74 cleavage and polyadenylation specificity factor 73-I[more]
AT5G23880.13.5e-1033.33 cleavage and polyadenylation specificity factor 100[more]
BLAST of MELO3C021828 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778673825|ref|XP_011650069.1|7.5e-55100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ... [more]
gi|778673818|ref|XP_011650067.1|7.5e-55100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ... [more]
gi|659118492|ref|XP_008459149.1|7.5e-55100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ... [more]
gi|778673821|ref|XP_011650068.1|7.5e-55100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ... [more]
gi|659118488|ref|XP_008459147.1|7.5e-55100.00PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001279Metallo-B-lactamas
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010197 polar nucleus fusion
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021828T2MELO3C021828T2mRNA
MELO3C021828T1MELO3C021828T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021828Cucurbita pepo (Zucchini)cpemeB260
MELO3C021828Cucurbita pepo (Zucchini)cpemeB672
MELO3C021828Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C021828Cucumber (Gy14) v2cgybmeB083
MELO3C021828Silver-seed gourdcarmeB0429
MELO3C021828Silver-seed gourdcarmeB1022
MELO3C021828Cucumber (Chinese Long) v3cucmeB103
MELO3C021828Watermelon (97103) v2mewmbB130
MELO3C021828Wax gourdmewgoB126
MELO3C021828Cucurbita maxima (Rimu)cmameB493
MELO3C021828Cucurbita maxima (Rimu)cmameB534
MELO3C021828Cucurbita moschata (Rifu)cmomeB483
MELO3C021828Cucurbita moschata (Rifu)cmomeB524
MELO3C021828Wild cucumber (PI 183967)cpimeB096
MELO3C021828Cucumber (Chinese Long) v2cumeB086
MELO3C021828Watermelon (Charleston Gray)mewcgB076
MELO3C021828Watermelon (97103) v1mewmB087