MELO3C021690T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021690T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribosome maturation factor RimP
Location	chr12 : 15630577 .. 15631282 (-)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTTAAGTAGGCATGTCGATTAAGTTGTTCAATTATTCTAAGTTTTAAGTTGCCTAAATTCATAAAATATTAGTCACCTTAAAGTCATATTTCTTTGGAGAATGAGTTTTGAATTTCAAAGTATAGATACAAAGCTTAAAGAGGCTACACAGAAAGATTTTGCATAACTACGTAGTACTATAAGAAAATATGTTACAAAAGTAATCCAATTAGAACGAAATTCGATGTGTCAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

mRNA sequence

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

Coding sequence (CDS)

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

Protein sequence

MVREFVSEGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEEELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANTLVEENVEEEFDGNMQFSDSEGKVVGVSPILRIHEDEIIRLEPCIFEPKHKKLVIV*

Homology

[Close]

BLAST of MELO3C021690T1 vs. TAIR10
Match: AT1G56660.1 (AT1G56660.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 38/127 (29.92%), Postives = 62/127 (48.82%), Query Frame = 1


Query: 8   EGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEE 67
           E  ++EE  TE++K   V  G SE+ K+K KK  KK  K +  +P   E+E      +++
Sbjct: 402 EAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPKMTEDE---EEKKDD 461

Query: 68  ELDRMVCGEK-------EEVIESKGMNN---FQSNLEKENQEANTLVEENVEEEFDGNMQ 125
             D  + G K       ++V + KG N+    ++ L K +++   L+EE  E E     Q
Sbjct: 462 SKDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKIDEKIGALMEEKAEIE----NQ 521

HSP 2 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 32/120 (26.67%), Postives = 61/120 (50.83%), Query Frame = 1


Query: 3   REFVSEGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFP 62
           +E    G EE+ KK ++EK     + VS++ +E  ++  KK  K E D+   EE++   P
Sbjct: 139 KEKDESGPEEKNKKADKEKK---HEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKK-P 198

Query: 63  RAQEEELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANTLVEENVEEEFDGNMQFSDSE 122
           + ++++ +     E ++V + K     + +LEKE++E     ++   +E D  M+  DS+
Sbjct: 199 KKEKKQKEESKSNEDKKV-KGKKEKGEKGDLEKEDEE-----KKKEHDETDQEMKEKDSK 248

HSP 3 Score: 36.6 bits (83), Expect = 1.7e-02
Identity = 30/95 (31.58%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 8   EGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEE 67
           E  E+E KK +++K+        E+++E+ K+  KK+ K E D+   EE+     +A +E
Sbjct: 109 EEHEKEHKKGKEKKH--------EELEEE-KEGKKKKNKKEKDESGPEEKNK---KADKE 168

Query: 68  ELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANT 103
           +    V  EKEE+ E  G    + N +KE  E+ T
Sbjct: 169 KKHEDVSQEKEELEEEDG----KKNKKKEKDESGT 187

The following BLAST results are available for this feature:

BLAST of MELO3C021690T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56660.1	5.7e-06	29.92	unknown protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021690	MELO3C021690	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C021690T1	MELO3C021690T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021690T1.cds2	MELO3C021690T1.cds2	CDS
MELO3C021690T1.cds1	MELO3C021690T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 86..110 scor