MELO3C021690 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C021690
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosome maturation factor RimP
Locationchr12 : 15630577 .. 15631282 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTTAAGTAGGCATGTCGATTAAGTTGTTCAATTATTCTAAGTTTTAAGTTGCCTAAATTCATAAAATATTAGTCACCTTAAAGTCATATTTCTTTGGAGAATGAGTTTTGAATTTCAAAGTATAGATACAAAGCTTAAAGAGGCTACACAGAAAGATTTTGCATAACTACGTAGTACTATAAGAAAATATGTTACAAAAGTAATCCAATTAGAACGAAATTCGATGTGTCAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

mRNA sequence

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

Coding sequence (CDS)

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

Protein sequence

MVREFVSEGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEEELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANTLVEENVEEEFDGNMQFSDSEGKVVGVSPILRIHEDEIIRLEPCIFEPKHKKLVIV*
Homology
[Close]
BLAST of MELO3C021690 vs. TAIR10
Match: AT1G56660.1 (AT1G56660.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 38/127 (29.92%), Postives = 62/127 (48.82%), Query Frame = 1 

Query: 8   EGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEE 67
           E  ++EE  TE++K   V  G SE+ K+K KK  KK  K +  +P   E+E      +++
Sbjct: 402 EAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPKMTEDE---EEKKDD 461

Query: 68  ELDRMVCGEK-------EEVIESKGMNN---FQSNLEKENQEANTLVEENVEEEFDGNMQ 125
             D  + G K       ++V + KG N+    ++ L K +++   L+EE  E E     Q
Sbjct: 462 SKDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKIDEKIGALMEEKAEIE----NQ 521


HSP 2 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 32/120 (26.67%), Postives = 61/120 (50.83%), Query Frame = 1 

Query: 3   REFVSEGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFP 62
           +E    G EE+ KK ++EK     + VS++ +E  ++  KK  K E D+   EE++   P
Sbjct: 139 KEKDESGPEEKNKKADKEKK---HEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKK-P 198

Query: 63  RAQEEELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANTLVEENVEEEFDGNMQFSDSE 122
           + ++++ +     E ++V + K     + +LEKE++E     ++   +E D  M+  DS+
Sbjct: 199 KKEKKQKEESKSNEDKKV-KGKKEKGEKGDLEKEDEE-----KKKEHDETDQEMKEKDSK 248


HSP 3 Score: 36.6 bits (83), Expect = 1.7e-02
Identity = 30/95 (31.58%), Postives = 49/95 (51.58%), Query Frame = 1 

Query: 8   EGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEE 67
           E  E+E KK +++K+        E+++E+ K+  KK+ K E D+   EE+     +A +E
Sbjct: 109 EEHEKEHKKGKEKKH--------EELEEE-KEGKKKKNKKEKDESGPEEKNK---KADKE 168

Query: 68  ELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANT 103
           +    V  EKEE+ E  G    + N +KE  E+ T
Sbjct: 169 KKHEDVSQEKEELEEEDG----KKNKKKEKDESGT 187

The following BLAST results are available for this feature:
BLAST of MELO3C021690 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G56660.15.7e-0629.92 unknown protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021690T1MELO3C021690T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 86..110
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C021690Silver-seed gourdcarmeB1005
MELO3C021690Cucumber (Chinese Long) v3cucmeB017
MELO3C021690Watermelon (97103) v2mewmbB139
MELO3C021690Watermelon (97103) v2mewmbB141
MELO3C021690Wax gourdmewgoB164
MELO3C021690Wax gourdmewgoB180
MELO3C021690Cucumber (Gy14) v1cgymeB018
MELO3C021690Cucurbita maxima (Rimu)cmameB192
MELO3C021690Wild cucumber (PI 183967)cpimeB018
MELO3C021690Wild cucumber (PI 183967)cpimeB451
MELO3C021690Cucumber (Chinese Long) v2cumeB020
MELO3C021690Watermelon (Charleston Gray)mewcgB136
MELO3C021690Watermelon (Charleston Gray)mewcgB140
MELO3C021690Watermelon (97103) v1mewmB165
MELO3C021690Watermelon (97103) v1mewmB170
MELO3C021690Cucurbita pepo (Zucchini)cpemeB477
MELO3C021690Bottle gourd (USVL1VR-Ls)lsimeB129
MELO3C021690Bottle gourd (USVL1VR-Ls)lsimeB180
MELO3C021690Cucumber (Gy14) v2cgybmeB017
MELO3C021690Cucumber (Gy14) v2cgybmeB396