MELO3C021690 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021690
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribosome maturation factor RimP
Location	chr12 : 15630577 .. 15631282 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTTAAGTAGGCATGTCGATTAAGTTGTTCAATTATTCTAAGTTTTAAGTTGCCTAAATTCATAAAATATTAGTCACCTTAAAGTCATATTTCTTTGGAGAATGAGTTTTGAATTTCAAAGTATAGATACAAAGCTTAAAGAGGCTACACAGAAAGATTTTGCATAACTACGTAGTACTATAAGAAAATATGTTACAAAAGTAATCCAATTAGAACGAAATTCGATGTGTCAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

mRNA sequence

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

Coding sequence (CDS)

ATGGTGAGAGAGTTTGTGAGTGAAGGACGAGAAGAAGAGGAAAAGAAGACAGAACAAGAAAAAAATTTAACCGTCTCCGATGGGGTTTCGGAGAAAGTAAAAGAAAAATGGAAGAAGGTCTCAAAGAAACGATGCAAGCCAGAACATGATCAACCACCCAAAGAAGAAGAAGAAGCAAATTTTCCAAGAGCACAAGAAGAAGAATTAGATAGAATGGTTTGTGGCGAGAAAGAAGAAGTCATTGAGAGTAAAGGTATGAACAATTTTCAATCAAACTTAGAGAAAGAAAACCAAGAGGCAAACACTTTGGTGGAAGAGAATGTGGAGGAGGAATTTGATGGCAACATGCAATTTAGTGATAGTGAAGGAAAAGTTGTGGGAGTGAGTCCAATTTTAAGAATACATGAAGATGAAATTATCCGCTTAGAACCATGCATATTTGAGCCTAAACACAAAAAGCTTGTTATCGTCTAG

Protein sequence

MVREFVSEGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEEELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANTLVEENVEEEFDGNMQFSDSEGKVVGVSPILRIHEDEIIRLEPCIFEPKHKKLVIV*

Homology

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BLAST of MELO3C021690 vs. TAIR10
Match: AT1G56660.1 (AT1G56660.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.7e-06
Identity = 38/127 (29.92%), Postives = 62/127 (48.82%), Query Frame = 1


Query: 8   EGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEE 67
           E  ++EE  TE++K   V  G SE+ K+K KK  KK  K +  +P   E+E      +++
Sbjct: 402 EAEKKEEDDTEEKKKSKVEGGESEEGKKKKKKDKKKNKKKDTKEPKMTEDE---EEKKDD 461

Query: 68  ELDRMVCGEK-------EEVIESKGMNN---FQSNLEKENQEANTLVEENVEEEFDGNMQ 125
             D  + G K       ++V + KG N+    ++ L K +++   L+EE  E E     Q
Sbjct: 462 SKDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKIDEKIGALMEEKAEIE----NQ 521

HSP 2 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 32/120 (26.67%), Postives = 61/120 (50.83%), Query Frame = 1


Query: 3   REFVSEGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFP 62
           +E    G EE+ KK ++EK     + VS++ +E  ++  KK  K E D+   EE++   P
Sbjct: 139 KEKDESGPEEKNKKADKEKK---HEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKK-P 198

Query: 63  RAQEEELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANTLVEENVEEEFDGNMQFSDSE 122
           + ++++ +     E ++V + K     + +LEKE++E     ++   +E D  M+  DS+
Sbjct: 199 KKEKKQKEESKSNEDKKV-KGKKEKGEKGDLEKEDEE-----KKKEHDETDQEMKEKDSK 248

HSP 3 Score: 36.6 bits (83), Expect = 1.7e-02
Identity = 30/95 (31.58%), Postives = 49/95 (51.58%), Query Frame = 1


Query: 8   EGREEEEKKTEQEKNLTVSDGVSEKVKEKWKKVSKKRCKPEHDQPPKEEEEANFPRAQEE 67
           E  E+E KK +++K+        E+++E+ K+  KK+ K E D+   EE+     +A +E
Sbjct: 109 EEHEKEHKKGKEKKH--------EELEEE-KEGKKKKNKKEKDESGPEEKNK---KADKE 168

Query: 68  ELDRMVCGEKEEVIESKGMNNFQSNLEKENQEANT 103
           +    V  EKEE+ E  G    + N +KE  E+ T
Sbjct: 169 KKHEDVSQEKEELEEEDG----KKNKKKEKDESGT 187

The following BLAST results are available for this feature:

BLAST of MELO3C021690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56660.1	5.7e-06	29.92	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021690T1	MELO3C021690T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 86..110 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C021690	Cucurbita pepo (Zucchini)	cpemeB477
MELO3C021690	Bottle gourd (USVL1VR-Ls)	lsimeB129
MELO3C021690	Bottle gourd (USVL1VR-Ls)	lsimeB180
MELO3C021690	Cucumber (Gy14) v2	cgybmeB017
MELO3C021690	Cucumber (Gy14) v2	cgybmeB396
MELO3C021690	Silver-seed gourd	carmeB1005
MELO3C021690	Cucumber (Chinese Long) v3	cucmeB017
MELO3C021690	Watermelon (97103) v2	mewmbB139
MELO3C021690	Watermelon (97103) v2	mewmbB141
MELO3C021690	Wax gourd	mewgoB164
MELO3C021690	Wax gourd	mewgoB180
MELO3C021690	Cucumber (Gy14) v1	cgymeB018
MELO3C021690	Cucurbita maxima (Rimu)	cmameB192
MELO3C021690	Wild cucumber (PI 183967)	cpimeB018
MELO3C021690	Wild cucumber (PI 183967)	cpimeB451
MELO3C021690	Cucumber (Chinese Long) v2	cumeB020
MELO3C021690	Watermelon (Charleston Gray)	mewcgB136
MELO3C021690	Watermelon (Charleston Gray)	mewcgB140
MELO3C021690	Watermelon (97103) v1	mewmB165
MELO3C021690	Watermelon (97103) v1	mewmB170