MELO3C020882T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C020882T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionThioredoxin-like protein 4A
Locationchr11 : 3226779 .. 3229332 (-)
Sequence length978
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGATCATTATGTTTGTGGAAACTTGGAAGCCGTCTTTCGTACTTCGTGTTCGTGGGTCTCCTCTCCTTCGTTCATTTTCATTCGTGAGTTTCGTACCTCGTGTTCGTGGGTTTCGTTTTCACAGTAGCTCCCGACGGTGTACTGCTGCACCATCCGACGGGACCAACAATTCAAATCGCTTAATTCTTTCGACCCACTCTCCGATCGATCTCAATTCTTGACACCCACGATCTCACGGCTGCAGATCTGCAAGTTTTAACGCCTTTGAACGCAGTTCATCAAGCTCAAGCTCGTTTGGTGAGAAATAGTGAGTAACGATTTACTCTAAACCACTTTCGGACTTTTTTTTTAAGTGTTTTAATTTAGGTTTTAGCCCTTGAAACTATGCTTTTTTGTGGTCTCGAATCGTTCAAACAGGTTGCAAAGGTGTTTAAGGCTAACTTTGGGTATAAAAAAAGGAATTGTTACCATCTCCTGAACAACTTTTCCGATTTGATTGAGGATTTCAATCTGTTTTTAACCCTGGAATCTGTTTTTCTTGTTTCAAGAGCTAAGAGCGCTTTGATTTAAACTGTGTGCTACTACCAGCTGCTATGTTTTCCGGTGTCATGTTGGGTTATGCTCCTGTGACGTTAAGCGTGTTGTTATATCTAGATTTTCTGAAACTATAGGATAGTGTGATATTTTTTTGCTCAAGTTCATGGAGTTATATGGTTAGAATCTGATCTGGAGAACATGTTTTAGGATGTTCATACTTGGGTTTACTGTGAGACTGAATTGTGAAAGAGGTCTCAGAGGACCTTGGGTTTATGATAAAGGAAAGTGAGGGCAATAGTAGGGCCTCAGACGTAAATGGTCGAGGCATAGTATTGTGTTTAAGAAAGTAATAAAGAAGATTAGAGGTTCATATATAAATTGTTGAATAATGGTATTATGATTGGGTAAGTAAGTGAATATCATAGCCTGGGTCCTTGGGATGGAAAAATGGTCGATGGAAAATGTGTCACTCTTTGATAATGAGACTTCAGGATAAAGCATTGTAGCCTTTGGTATAATTGGTCAAAGGTCAGTGTGATGAGTCTTGAGGCAGATATTGGGGCTTTCAGTATATATGAATATATGATTGAGGGCCAATACATTGTTGAGTCATTAAGTTTTTGGGTGTAAATGGTCAAGGAACTTGAGGCCTGAGGTATAAATAGTTTAGGATCAAACATTGAGTTCTTTAGAGCAGTGTGGAAGCGTTTGGTAAGAGTTTGATAAGGGAGAATGCTAGAAAGAGTCGTGGTGGACTCGGTGATGTTTGAGAAAGTTTAGGATGAGCATGCATGATGATATAATTAAGACCACGAGTTGAATAAGTCAATAAAGTCACACATATTACTCATTTTCATATATGTTGTATTGTATATGAATAACTTATTTGAGAAGCATGTTGTGATGTATGTTATATGTTGTTTGTCACTCGTTAGGTGGAAGCTAGTTACTGAGCAAGAGATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAAGCAATCCTTGCAGAAGAAGAGCGTCTTGTGGTCATTCGTTTTGGTCATGATTGGGATGAAACTTGTATGCAGGTCTTTACCTCTTCCATTTCATAATCTTCCATTCCTCTTTCTCAGCATAATTGGTTCATCATCAAATTTAATGTTGACCATGTTGTGTCTCTCTCTCTGAAATTCTCTATTCTTCTTCTTGCTTCCAATGAACTGAATTTATTTTGTTCTGGTCTTTAGTTTCACAAAAGAAGTTTCTATTATCATCGTGTGTTCCCGACACGTTATGCATTCCTACTTGTTTTTAGTATGTAGTATGTACCAAAGATGAAGTTCCTTCATCCCAGTTATGAACTATGATTTTCCCTCTTTTTATGTTAAATATGATTACAGTTCTTCTATCTTACATGTTCAAGATTGGGAAGATGAAGATCCTTAAGTTTCTTTTTTCTTTTTGAGATGTTTCATCTGATTGAGATGCTTTTGTTCTAGATGGATGAAGTGTTGGCCTCAGTGGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCCGACTTCAACACAATGTACGAGCTGTATGATCCTTCCACCGTTATGTTTTTCTTTAGGAACAAGCACATAATGATTGATCTTGGAACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGACAAGCAGGAGTTCATTGATATCATTGAAACAGTCTACCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGATTTTCTGCTGCATCTAAAACTCCTTATTCATCTTAAATATTATGTCCTATATGACATTAATAACCTCCTAAAAAAAGTTATGGTTGATTCAGGCATATTAAGTTACTACCTTGTTTGTGAATAAAAGTGTATGATACACAATTTTAACGTTTATTTGTAATACTGAATTGAATCTTAATTATGCTATCTATGATTGGATATACTTTGTCTTTT

mRNA sequence

ATCGATCATTATGTTTGTGGAAACTTGGAAGCCGTCTTTCGTACTTCGTGTTCGTGGGTCTCCTCTCCTTCGTTCATTTTCATTCGTGAGTTTCGTACCTCGTGTTCGTGGGTTTCGTTTTCACAGTAGCTCCCGACGGTGTACTGCTGCACCATCCGACGGGACCAACAATTCAAATCGCTTAATTCTTTCGACCCACTCTCCGATCGATCTCAATTCTTGACACCCACGATCTCACGGCTGCAGATCTGCAAGTTTTAACGCCTTTGAACGCAGTTCATCAAGCTCAAGCTCGTTTGGTGAGAAATAGTGGAAGCTAGTTACTGAGCAAGAGATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAAGCAATCCTTGCAGAAGAAGAGCGTCTTGTGGTCATTCGTTTTGGTCATGATTGGGATGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTGGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCCGACTTCAACACAATGTACGAGCTGTATGATCCTTCCACCGTTATGTTTTTCTTTAGGAACAAGCACATAATGATTGATCTTGGAACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGACAAGCAGGAGTTCATTGATATCATTGAAACAGTCTACCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGATTTTCTGCTGCATCTAAAACTCCTTATTCATCTTAAATATTATGTCCTATATGACATTAATAACCTCCTAAAAAAAGTTATGGTTGATTCAGGCATATTAAGTTACTACCTTGTTTGTGAATAAAAGTGTATGATACACAATTTTAACGTTTATTTGTAATACTGAATTGAATCTTAATTATGCTATCTATGATTGGATATACTTTGTCTTTT

Coding sequence (CDS)

ATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAAGCAATCCTTGCAGAAGAAGAGCGTCTTGTGGTCATTCGTTTTGGTCATGATTGGGATGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTGGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCCGACTTCAACACAATGTACGAGCTGTATGATCCTTCCACCGTTATGTTTTTCTTTAGGAACAAGCACATAATGATTGATCTTGGAACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGACAAGCAGGAGTTCATTGATATCATTGAAACAGTCTACCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY*
Homology
[Close]
BLAST of MELO3C020882T1 vs. Swiss-Prot
Match: YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-78
Identity = 141/142 (99.30%), Postives = 140/142 (98.59%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-61
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

[Close]
BLAST of MELO3C020882T1 vs. Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-50
Identity = 93/138 (67.39%), Postives = 110/138 (79.71%), Query Frame = 1 

Query: 2   SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDIIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

[Close]
BLAST of MELO3C020882T1 vs. TrEMBL
Match: A0A0B0MLM5_GOSAR (Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. TrEMBL
Match: S4U0X2_GOSHI (YLS8 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. TrEMBL
Match: A0A0A0LLZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. TrEMBL
Match: F8RWT4_HEVBR (Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. TrEMBL
Match: V4N5J9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014963mg PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. TAIR10
Match: AT5G08290.1 (AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 293.1 bits (749), Expect = 9.2e-80
Identity = 141/142 (99.30%), Postives = 140/142 (98.59%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. TAIR10
Match: AT3G24730.1 (AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

[Close]
BLAST of MELO3C020882T1 vs. NCBI nr
Match: gi|763810468|gb|KJB77370.1| (hypothetical protein B456_012G134400 [Gossypium raimondii])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]
BLAST of MELO3C020882T1 vs. NCBI nr
Match: gi|449460616|ref|XP_004148041.1| (PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. NCBI nr
Match: gi|629099303|gb|KCW65068.1| (hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis])

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-76
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 176 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 235

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 236 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 295

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 296 RGARKGRGLVIAPKDYSTKYRY 317

[Close]
BLAST of MELO3C020882T1 vs. NCBI nr
Match: gi|224094081|ref|XP_002310072.1| (hypothetical protein POPTR_0007s07660g [Populus trichocarpa])

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-76
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882T1 vs. NCBI nr
Match: gi|743775965|ref|XP_010918377.1| (PREDICTED: thioredoxin-like protein YLS8 [Elaeis guineensis])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-76
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

The following BLAST results are available for this feature:
BLAST of MELO3C020882T1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YLS8_ARATH1.6e-7899.30Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1[more]
TXN4A_HUMAN1.2e-7085.92Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1[more]
TXN4A_MOUSE1.2e-7085.92Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1[more]
DIMI_SCHPO4.0e-6176.76Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=d... [more]
DIB1_ASHGO1.4e-5067.39Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F... [more]
BLAST of MELO3C020882T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0MLM5_GOSAR8.1e-77100.00Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1[more]
S4U0X2_GOSHI8.1e-77100.00YLS8 OS=Gossypium hirsutum PE=2 SV=1[more]
A0A0A0LLZ8_CUCSA8.1e-77100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1[more]
F8RWT4_HEVBR8.1e-77100.00Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1[more]
V4N5J9_EUTSA8.1e-77100.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014963mg PE=4 SV=1[more]
BLAST of MELO3C020882T1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08290.19.2e-8099.30 mRNA splicing factor, thioredoxin-like U5 snRNP[more]
AT3G24730.12.4e-1937.96 mRNA splicing factor, thioredoxin-like U5 snRNP[more]
BLAST of MELO3C020882T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763810468|gb|KJB77370.1|1.2e-76100.00hypothetical protein B456_012G134400 [Gossypium raimondii][more]
gi|449460616|ref|XP_004148041.1|1.2e-76100.00PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus][more]
gi|629099303|gb|KCW65068.1|1.5e-7699.30hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis][more]
gi|224094081|ref|XP_002310072.1|1.5e-7699.30hypothetical protein POPTR_0007s07660g [Populus trichocarpa][more]
gi|743775965|ref|XP_010918377.1|2.0e-7698.59PREDICTED: thioredoxin-like protein YLS8 [Elaeis guineensis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004123Dim1
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0016049 cell growth
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016197 endosomal transport
biological_process GO:0007030 Golgi organization
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0007067 mitotic nuclear division
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0007033 vacuole organization
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0009536 plastid
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C020882MELO3C020882gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C020882T1MELO3C020882T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020882T1.cds2MELO3C020882T1.cds2CDS
MELO3C020882T1.cds1MELO3C020882T1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familyPIRPIRSF017199Dim1coord: 1..142
score: 4.5
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..142
score: 5.7E
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..136
score: 2.1
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..136
score: 1.4
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 1..142
score: 8.0
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 4..137
score: 2.96
NoneNo IPR availablePANTHERPTHR12052:SF6THIOREDOXIN-LIKE PROTEIN YLS8coord: 1..142
score: 5.7E