MELO3C020882 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C020882
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionThioredoxin-like protein 4A
Locationchr11 : 3226779 .. 3229332 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGATCATTATGTTTGTGGAAACTTGGAAGCCGTCTTTCGTACTTCGTGTTCGTGGGTCTCCTCTCCTTCGTTCATTTTCATTCGTGAGTTTCGTACCTCGTGTTCGTGGGTTTCGTTTTCACAGTAGCTCCCGACGGTGTACTGCTGCACCATCCGACGGGACCAACAATTCAAATCGCTTAATTCTTTCGACCCACTCTCCGATCGATCTCAATTCTTGACACCCACGATCTCACGGCTGCAGATCTGCAAGTTTTAACGCCTTTGAACGCAGTTCATCAAGCTCAAGCTCGTTTGGTGAGAAATAGTGAGTAACGATTTACTCTAAACCACTTTCGGACTTTTTTTTTAAGTGTTTTAATTTAGGTTTTAGCCCTTGAAACTATGCTTTTTTGTGGTCTCGAATCGTTCAAACAGGTTGCAAAGGTGTTTAAGGCTAACTTTGGGTATAAAAAAAGGAATTGTTACCATCTCCTGAACAACTTTTCCGATTTGATTGAGGATTTCAATCTGTTTTTAACCCTGGAATCTGTTTTTCTTGTTTCAAGAGCTAAGAGCGCTTTGATTTAAACTGTGTGCTACTACCAGCTGCTATGTTTTCCGGTGTCATGTTGGGTTATGCTCCTGTGACGTTAAGCGTGTTGTTATATCTAGATTTTCTGAAACTATAGGATAGTGTGATATTTTTTTGCTCAAGTTCATGGAGTTATATGGTTAGAATCTGATCTGGAGAACATGTTTTAGGATGTTCATACTTGGGTTTACTGTGAGACTGAATTGTGAAAGAGGTCTCAGAGGACCTTGGGTTTATGATAAAGGAAAGTGAGGGCAATAGTAGGGCCTCAGACGTAAATGGTCGAGGCATAGTATTGTGTTTAAGAAAGTAATAAAGAAGATTAGAGGTTCATATATAAATTGTTGAATAATGGTATTATGATTGGGTAAGTAAGTGAATATCATAGCCTGGGTCCTTGGGATGGAAAAATGGTCGATGGAAAATGTGTCACTCTTTGATAATGAGACTTCAGGATAAAGCATTGTAGCCTTTGGTATAATTGGTCAAAGGTCAGTGTGATGAGTCTTGAGGCAGATATTGGGGCTTTCAGTATATATGAATATATGATTGAGGGCCAATACATTGTTGAGTCATTAAGTTTTTGGGTGTAAATGGTCAAGGAACTTGAGGCCTGAGGTATAAATAGTTTAGGATCAAACATTGAGTTCTTTAGAGCAGTGTGGAAGCGTTTGGTAAGAGTTTGATAAGGGAGAATGCTAGAAAGAGTCGTGGTGGACTCGGTGATGTTTGAGAAAGTTTAGGATGAGCATGCATGATGATATAATTAAGACCACGAGTTGAATAAGTCAATAAAGTCACACATATTACTCATTTTCATATATGTTGTATTGTATATGAATAACTTATTTGAGAAGCATGTTGTGATGTATGTTATATGTTGTTTGTCACTCGTTAGGTGGAAGCTAGTTACTGAGCAAGAGATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAAGCAATCCTTGCAGAAGAAGAGCGTCTTGTGGTCATTCGTTTTGGTCATGATTGGGATGAAACTTGTATGCAGGTCTTTACCTCTTCCATTTCATAATCTTCCATTCCTCTTTCTCAGCATAATTGGTTCATCATCAAATTTAATGTTGACCATGTTGTGTCTCTCTCTCTGAAATTCTCTATTCTTCTTCTTGCTTCCAATGAACTGAATTTATTTTGTTCTGGTCTTTAGTTTCACAAAAGAAGTTTCTATTATCATCGTGTGTTCCCGACACGTTATGCATTCCTACTTGTTTTTAGTATGTAGTATGTACCAAAGATGAAGTTCCTTCATCCCAGTTATGAACTATGATTTTCCCTCTTTTTATGTTAAATATGATTACAGTTCTTCTATCTTACATGTTCAAGATTGGGAAGATGAAGATCCTTAAGTTTCTTTTTTCTTTTTGAGATGTTTCATCTGATTGAGATGCTTTTGTTCTAGATGGATGAAGTGTTGGCCTCAGTGGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCCGACTTCAACACAATGTACGAGCTGTATGATCCTTCCACCGTTATGTTTTTCTTTAGGAACAAGCACATAATGATTGATCTTGGAACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGACAAGCAGGAGTTCATTGATATCATTGAAACAGTCTACCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGATTTTCTGCTGCATCTAAAACTCCTTATTCATCTTAAATATTATGTCCTATATGACATTAATAACCTCCTAAAAAAAGTTATGGTTGATTCAGGCATATTAAGTTACTACCTTGTTTGTGAATAAAAGTGTATGATACACAATTTTAACGTTTATTTGTAATACTGAATTGAATCTTAATTATGCTATCTATGATTGGATATACTTTGTCTTTT

mRNA sequence

ATCGATCATTATGTTTGTGGAAACTTGGAAGCCGTCTTTCGTACTTCGTGTTCGTGGGTCTCCTCTCCTTCGTTCATTTTCATTCGTGAGTTTCGTACCTCGTGTTCGTGGGTTTCGTTTTCACAGTAGCTCCCGACGGTGTACTGCTGCACCATCCGACGGGACCAACAATTCAAATCGCTTAATTCTTTCGACCCACTCTCCGATCGATCTCAATTCTTGACACCCACGATCTCACGGCTGCAGATCTGCAAGTTTTAACGCCTTTGAACGCAGTTCATCAAGCTCAAGCTCGTTTGGTGAGAAATAGTGGAAGCTAGTTACTGAGCAAGAGATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAAGCAATCCTTGCAGAAGAAGAGCGTCTTGTGGTCATTCGTTTTGGTCATGATTGGGATGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTGGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCCGACTTCAACACAATGTACGAGCTGTATGATCCTTCCACCGTTATGTTTTTCTTTAGGAACAAGCACATAATGATTGATCTTGGAACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGACAAGCAGGAGTTCATTGATATCATTGAAACAGTCTACCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAAGATTTTCTGCTGCATCTAAAACTCCTTATTCATCTTAAATATTATGTCCTATATGACATTAATAACCTCCTAAAAAAAGTTATGGTTGATTCAGGCATATTAAGTTACTACCTTGTTTGTGAATAAAAGTGTATGATACACAATTTTAACGTTTATTTGTAATACTGAATTGAATCTTAATTATGCTATCTATGATTGGATATACTTTGTCTTTT

Coding sequence (CDS)

ATGTCGTACTTGCTGCCACATCTTCATTCAGGATGGGCTGTTGACCAAGCAATCCTTGCAGAAGAAGAGCGTCTTGTGGTCATTCGTTTTGGTCATGATTGGGATGAAACTTGTATGCAGATGGATGAAGTGTTGGCCTCAGTGGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTGTGGATATCACAGAGGTTCCCGACTTCAACACAATGTACGAGCTGTATGATCCTTCCACCGTTATGTTTTTCTTTAGGAACAAGCACATAATGATTGATCTTGGAACTGGAAACAACAATAAGATAAACTGGGCACTTAAGGACAAGCAGGAGTTCATTGATATCATTGAAACAGTCTACCGTGGAGCAAGGAAAGGACGTGGTTTAGTCATTGCACCTAAGGACTATTCAACCAAATATCGCTACTAA

Protein sequence

MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYRGARKGRGLVIAPKDYSTKYRY*
Homology
[Close]
BLAST of MELO3C020882 vs. Swiss-Prot
Match: YLS8_ARATH (Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-78
Identity = 141/142 (99.30%), Postives = 140/142 (98.59%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY+LPHLH+GW VDQAIL+EE+R+VVIRFGHDWD TCM+MDEVL S+AE +KNFAVIYL
Sbjct: 1   MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DIIETVY
Sbjct: 61  VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLV++PKDYSTKYRY
Sbjct: 121 RGARKGRGLVVSPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dim1 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.0e-61
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSY LPHLHSGW VDQAIL+E+ERLVVIRFG D DE C++ DEVL  +AE + N AVIYL
Sbjct: 1   MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDIIET++
Sbjct: 61  VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKG+GLVI+PKDYST++RY
Sbjct: 121 RGARKGKGLVISPKDYSTRHRY 142

[Close]
BLAST of MELO3C020882 vs. Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-50
Identity = 93/138 (67.39%), Postives = 110/138 (79.71%), Query Frame = 1 

Query: 2   SYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLV 61
           S  LPHLHSGW VDQAI+ EEERLVVIRFG D D +CM MDE+L S+AE + NFA IY+ 
Sbjct: 3   SVFLPHLHSGWHVDQAIVTEEERLVVIRFGSDSDRSCMLMDEILYSIAEKVVNFAAIYVC 62

Query: 62  DITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVYR 121
           D TEVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDIIETV+R
Sbjct: 63  DTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVFR 122

Query: 122 GARKGRGLVIAPKDYSTK 140
           GAR+ +GLV++P DY+ K
Sbjct: 123 GARRNKGLVVSPYDYNYK 140

[Close]
BLAST of MELO3C020882 vs. TrEMBL
Match: A0A0B0MLM5_GOSAR (Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. TrEMBL
Match: S4U0X2_GOSHI (YLS8 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. TrEMBL
Match: A0A0A0LLZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. TrEMBL
Match: F8RWT4_HEVBR (Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. TrEMBL
Match: V4N5J9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014963mg PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 8.1e-77
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. TAIR10
Match: AT5G08290.1 (AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 293.1 bits (749), Expect = 9.2e-80
Identity = 141/142 (99.30%), Postives = 140/142 (98.59%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQ+ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. TAIR10
Match: AT3G24730.1 (AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-19
Identity = 52/137 (37.96%), Postives = 76/137 (55.47%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLL  L +   +D+ I    + ++V+RFG   D  C+Q DE+LA     +  FA + L
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 120
           VD+ +  D     + +D    PST+ FFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 69  VDV-DSEDVQVYVKYFDITLFPSTI-FFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVV 128

Query: 121 ETVYRGARKGRGLVIAP 134
           E +YRGA KG+ +V  P
Sbjct: 129 EAIYRGAMKGKMIVQCP 143

[Close]
BLAST of MELO3C020882 vs. NCBI nr
Match: gi|763810468|gb|KJB77370.1| (hypothetical protein B456_012G134400 [Gossypium raimondii])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 66  MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 125

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 126 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 185

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 186 RGARKGRGLVIAPKDYSTKYRY 207

[Close]
BLAST of MELO3C020882 vs. NCBI nr
Match: gi|449460616|ref|XP_004148041.1| (PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-76
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. NCBI nr
Match: gi|629099303|gb|KCW65068.1| (hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis])

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-76
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 176 MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 235

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 236 VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 295

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 296 RGARKGRGLVIAPKDYSTKYRY 317

[Close]
BLAST of MELO3C020882 vs. NCBI nr
Match: gi|224094081|ref|XP_002310072.1| (hypothetical protein POPTR_0007s07660g [Populus trichocarpa])

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-76
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

[Close]
BLAST of MELO3C020882 vs. NCBI nr
Match: gi|743775965|ref|XP_010918377.1| (PREDICTED: thioredoxin-like protein YLS8 [Elaeis guineensis])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-76
Identity = 140/142 (98.59%), Postives = 142/142 (100.00%), Query Frame = 1 

Query: 1   MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60
           MSYLLPHLHSGWAVDQAILAEEERLV+IRFGHDWDETCMQMDEVLASVAETIKNFAVIYL
Sbjct: 1   MSYLLPHLHSGWAVDQAILAEEERLVIIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIIETVY 120
           VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI+ETVY
Sbjct: 61  VDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120

Query: 121 RGARKGRGLVIAPKDYSTKYRY 143
           RGARKGRGLVIAPKDYSTKYRY
Sbjct: 121 RGARKGRGLVIAPKDYSTKYRY 142

The following BLAST results are available for this feature:
BLAST of MELO3C020882 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YLS8_ARATH1.6e-7899.30Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1[more]
TXN4A_HUMAN1.2e-7085.92Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1[more]
TXN4A_MOUSE1.2e-7085.92Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=1 SV=1[more]
DIMI_SCHPO4.0e-6176.76Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=d... [more]
DIB1_ASHGO1.4e-5067.39Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F... [more]
BLAST of MELO3C020882 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0MLM5_GOSAR8.1e-77100.00Thioredoxin-like protein 4A OS=Gossypium arboreum GN=F383_27417 PE=4 SV=1[more]
S4U0X2_GOSHI8.1e-77100.00YLS8 OS=Gossypium hirsutum PE=2 SV=1[more]
A0A0A0LLZ8_CUCSA8.1e-77100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287060 PE=4 SV=1[more]
F8RWT4_HEVBR8.1e-77100.00Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1[more]
V4N5J9_EUTSA8.1e-77100.00Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014963mg PE=4 SV=1[more]
BLAST of MELO3C020882 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08290.19.2e-8099.30 mRNA splicing factor, thioredoxin-like U5 snRNP[more]
AT3G24730.12.4e-1937.96 mRNA splicing factor, thioredoxin-like U5 snRNP[more]
BLAST of MELO3C020882 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|763810468|gb|KJB77370.1|1.2e-76100.00hypothetical protein B456_012G134400 [Gossypium raimondii][more]
gi|449460616|ref|XP_004148041.1|1.2e-76100.00PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus][more]
gi|629099303|gb|KCW65068.1|1.5e-7699.30hypothetical protein EUGRSUZ_G02580 [Eucalyptus grandis][more]
gi|224094081|ref|XP_002310072.1|1.5e-7699.30hypothetical protein POPTR_0007s07660g [Populus trichocarpa][more]
gi|743775965|ref|XP_010918377.1|2.0e-7698.59PREDICTED: thioredoxin-like protein YLS8 [Elaeis guineensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004123Dim1
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016049 cell growth
biological_process GO:0000245 spliceosomal complex assembly
biological_process GO:0016197 endosomal transport
biological_process GO:0007030 Golgi organization
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0007067 mitotic nuclear division
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0007033 vacuole organization
biological_process GO:0000902 cell morphogenesis
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0009536 plastid
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54605melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020882T1MELO3C020882T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54605MU54605transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004123Dim1 familyPIRPIRSF017199Dim1coord: 1..142
score: 4.5
IPR004123Dim1 familyPANTHERPTHR12052THIOREDOXIN-LIKE PROTEN 4A, 4Bcoord: 1..142
score: 5.7E
IPR004123Dim1 familyPFAMPF02966DIM1coord: 4..136
score: 2.1
IPR004123Dim1 familySMARTSM01410DIM1_2coord: 4..136
score: 1.4
IPR012336Thioredoxin-like foldGENE3DG3DSA:3.40.30.10coord: 1..142
score: 8.0
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 4..137
score: 2.96
NoneNo IPR availablePANTHERPTHR12052:SF6THIOREDOXIN-LIKE PROTEIN YLS8coord: 1..142
score: 5.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C020882Csa2G287060Cucumber (Chinese Long) v2cumeB094
MELO3C020882Cla020175Watermelon (97103) v1mewmB108
MELO3C020882ClCG02G012920Watermelon (Charleston Gray)mewcgB093
MELO3C020882Cla97C02G038590Watermelon (97103) v2mewmbB095
MELO3C020882Bhi10G001782Wax gourdmewgoB119
MELO3C020882CSPI02G14460Wild cucumber (PI 183967)cpimeB092
MELO3C020882Cucsa.366640Cucumber (Gy14) v1cgymeB597
MELO3C020882CmaCh20G011500Cucurbita maxima (Rimu)cmameB507
MELO3C020882CmoCh20G011790Cucurbita moschata (Rifu)cmomeB498
MELO3C020882Lsi10G005810Bottle gourd (USVL1VR-Ls)lsimeB046
MELO3C020882Cp4.1LG16g00490Cucurbita pepo (Zucchini)cpemeB253
MELO3C020882CsGy2G014380Cucumber (Gy14) v2cgybmeB079
MELO3C020882Carg27911Silver-seed gourdcarmeB0840
MELO3C020882CsaV3_2G017010Cucumber (Chinese Long) v3cucmeB098
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C020882Cucumber (Gy14) v1cgymeB124
MELO3C020882Cucumber (Gy14) v1cgymeB596
MELO3C020882Cucurbita maxima (Rimu)cmameB545
MELO3C020882Cucurbita maxima (Rimu)cmameB554
MELO3C020882Cucurbita maxima (Rimu)cmameB780
MELO3C020882Cucurbita moschata (Rifu)cmomeB533
MELO3C020882Cucurbita moschata (Rifu)cmomeB547
MELO3C020882Cucurbita moschata (Rifu)cmomeB770
MELO3C020882Cucumber (Chinese Long) v2cumeB438
MELO3C020882Watermelon (Charleston Gray)mewcgB083
MELO3C020882Watermelon (Charleston Gray)mewcgB106
MELO3C020882Watermelon (97103) v1mewmB120
MELO3C020882Cucurbita pepo (Zucchini)cpemeB660
MELO3C020882Cucurbita pepo (Zucchini)cpemeB680
MELO3C020882Bottle gourd (USVL1VR-Ls)lsimeB054
MELO3C020882Bottle gourd (USVL1VR-Ls)lsimeB126
MELO3C020882Cucumber (Gy14) v2cgybmeB084
MELO3C020882Cucumber (Gy14) v2cgybmeB378
MELO3C020882Silver-seed gourdcarmeB0403
MELO3C020882Silver-seed gourdcarmeB0800
MELO3C020882Silver-seed gourdcarmeB1028
MELO3C020882Cucumber (Chinese Long) v3cucmeB102
MELO3C020882Cucumber (Chinese Long) v3cucmeB440
MELO3C020882Watermelon (97103) v2mewmbB078
MELO3C020882Watermelon (97103) v2mewmbB108